Wall clock time and date at job start Mon Mar 8 2021 11:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47052 * 2 1 4 4 C 1.52998 * 109.46827 * 239.99877 * 2 1 3 5 5 O 1.45203 * 109.47194 * 120.00332 * 2 1 3 6 6 C 1.34227 * 117.00401 * 59.99727 * 5 2 1 7 7 O 1.20827 * 119.99990 * 0.02562 * 6 5 2 8 8 C 1.50697 * 119.99979 * 180.02562 * 6 5 2 9 9 H 1.09000 * 112.85121 * 48.80117 * 8 6 5 10 10 C 1.53782 * 113.61181 * 179.97438 * 8 6 5 11 11 C 1.53787 * 87.07787 * 139.97771 * 10 8 6 12 12 O 1.42901 * 113.61550 * 89.20165 * 11 10 8 13 13 C 1.53002 * 113.61374 * 220.01800 * 11 10 8 14 14 N 1.46494 * 109.47189 * 178.47338 * 13 11 10 15 15 S 1.65599 * 120.00240 * 163.47820 * 14 13 11 16 16 O 1.42101 * 106.40226 * 310.42935 * 15 14 13 17 17 O 1.42103 * 106.40606 * 177.50877 * 15 14 13 18 18 C 1.76206 * 107.21784 * 63.96752 * 15 14 13 19 19 C 1.33384 * 122.53679 * 67.33737 * 18 15 14 20 20 C 1.50704 * 125.20612 * 0.24754 * 19 18 15 21 21 O 1.42902 * 109.47033 * 317.63876 * 20 19 18 22 22 Si 1.86300 * 109.47233 * 197.63491 * 20 19 18 23 23 S 1.75888 * 109.59437 * 179.97438 * 19 18 15 24 24 C 1.75882 * 90.96855 * 0.02562 * 23 19 18 25 25 C 1.33390 * 109.59346 * 359.97438 * 24 23 19 26 26 C 1.53781 * 87.17318 * 334.60831 * 11 10 8 27 27 H 1.09000 * 109.47016 * 299.99869 * 1 2 3 28 28 H 1.08990 * 109.47186 * 60.00047 * 1 2 3 29 29 H 1.09005 * 109.46829 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46804 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46668 * 299.99743 * 3 2 1 32 32 H 1.09000 * 109.47103 * 60.00184 * 3 2 1 33 33 H 1.09008 * 109.47327 * 300.00092 * 4 2 1 34 34 H 1.08997 * 109.47141 * 59.99666 * 4 2 1 35 35 H 1.08999 * 109.47149 * 180.02562 * 4 2 1 36 36 H 1.08998 * 113.61655 * 25.43535 * 10 8 6 37 37 H 1.09002 * 113.61692 * 254.52402 * 10 8 6 38 38 H 0.96695 * 113.99924 * 181.52598 * 12 11 10 39 39 H 1.08993 * 109.47259 * 58.47105 * 13 11 10 40 40 H 1.09000 * 109.47221 * 298.47081 * 13 11 10 41 41 H 0.97004 * 120.00262 * 343.48127 * 14 13 11 42 42 H 1.09005 * 109.47135 * 77.63218 * 20 19 18 43 43 H 0.96698 * 113.99810 * 180.02562 * 21 20 19 44 44 H 1.48495 * 110.00286 * 298.67954 * 22 20 19 45 45 H 1.48498 * 109.99964 * 60.00332 * 22 20 19 46 46 H 1.07998 * 125.20387 * 179.97438 * 24 23 19 47 47 H 1.08003 * 122.54014 * 179.97438 * 25 24 23 48 48 H 1.09004 * 113.61277 * 139.94124 * 26 11 10 49 49 H 1.08999 * 113.61360 * 270.84116 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0141 -0.6846 1.1855 6 6 1.6534 -1.9685 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1175 -2.7434 2.5441 9 1 1.9535 -2.2086 3.4796 10 6 1.6190 -4.1979 2.5710 11 6 3.0128 -4.5831 3.0945 12 8 3.1203 -4.5436 4.5189 13 6 3.5561 -5.8810 2.4935 14 7 4.8963 -6.1415 3.0244 15 16 5.5638 -7.6505 2.8839 16 8 4.5836 -8.5678 3.3496 17 8 6.8711 -7.5639 3.4343 18 6 5.7686 -7.9721 1.1636 19 6 6.6344 -7.2974 0.4057 20 6 7.5423 -6.1976 0.8928 21 8 6.8192 -5.3402 1.7783 22 14 8.1581 -5.2105 -0.5623 23 16 6.5601 -7.8930 -1.2476 24 6 5.3202 -9.0587 -0.8035 25 6 5.0434 -8.9441 0.4963 26 6 3.5397 -3.3155 2.4014 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7490 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.3967 -4.6017 1.5832 37 1 0.8189 -4.3721 3.2904 38 1 4.0010 -4.7622 4.8530 39 1 3.6071 -5.7858 1.4089 40 1 2.8949 -6.7072 2.7549 41 1 5.3929 -5.4300 3.4583 42 1 8.3902 -6.6336 1.4211 43 1 7.3426 -4.6076 2.1310 44 1 8.9389 -6.0840 -1.4747 45 1 7.0116 -4.6107 -1.2909 46 1 4.8542 -9.7601 -1.4798 47 1 4.3085 -9.5622 0.9905 48 1 4.2879 -2.7782 2.9842 49 1 3.8434 -3.4775 1.3672 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17792080_14772022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:17 Heat of formation + Delta-G solvation = -164.171695 kcal Electronic energy + Delta-G solvation = -36618.756832 eV Core-core repulsion = 31768.182110 eV Total energy + Delta-G solvation = -4850.574722 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.109 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.19781 -40.66162 -39.56467 -38.42536 -38.04725 -37.39673 -36.94419 -35.92346 -35.26928 -34.98987 -32.01029 -29.10594 -28.43205 -28.33863 -27.52277 -26.87467 -25.87247 -24.30742 -22.57942 -21.87412 -20.88371 -20.47934 -20.14909 -19.11079 -18.85648 -18.48430 -18.13480 -17.93999 -17.53953 -17.41133 -17.09790 -16.77716 -16.31451 -16.06716 -15.89760 -15.55883 -15.35999 -15.18536 -15.03572 -14.90972 -14.67707 -14.46975 -14.19311 -14.13383 -13.78409 -13.63139 -13.42313 -13.33349 -13.28182 -13.22692 -13.14561 -13.11705 -12.96941 -12.89826 -12.82736 -12.76590 -12.72670 -12.49776 -12.26855 -12.16488 -11.98607 -11.89562 -11.45629 -11.42180 -11.06862 -10.79988 -10.68947 -10.40719 -10.20361 -9.84723 -5.21778 -0.71876 -0.54681 0.21118 0.56042 0.99359 1.11580 1.15076 1.55220 1.67567 1.85364 2.05108 2.69206 2.98021 3.08505 3.22425 3.38780 3.48852 3.53175 3.57772 3.63606 3.69626 3.75618 3.89688 3.95478 4.02332 4.21308 4.27854 4.34314 4.41486 4.50011 4.54164 4.54928 4.61828 4.68246 4.71282 4.75147 4.77773 4.79365 4.83263 4.83919 4.89551 4.98667 5.03136 5.04457 5.08603 5.19559 5.21669 5.25087 5.54758 6.20982 6.76662 6.78135 6.79522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.180 4.180 5 O -0.353 6.353 6 C 0.471 3.529 7 O -0.526 6.526 8 C -0.107 4.107 9 H 0.136 0.864 10 C -0.111 4.111 11 C 0.119 3.881 12 O -0.544 6.544 13 C 0.105 3.895 14 N -1.074 6.074 15 S 2.740 3.260 16 O -0.995 6.995 17 O -0.970 6.970 18 C -0.675 4.675 19 C -0.058 4.058 20 C -0.074 4.074 21 O -0.548 6.548 22 Si 0.774 3.226 23 S 0.118 5.882 24 C -0.207 4.207 25 C -0.094 4.094 26 C -0.128 4.128 27 H 0.063 0.937 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.394 0.606 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.432 0.568 42 H 0.120 0.880 43 H 0.418 0.582 44 H -0.271 1.271 45 H -0.274 1.274 46 H 0.197 0.803 47 H 0.163 0.837 48 H 0.112 0.888 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 6.827 -1.946 8.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.270 6.270 6 C 0.316 3.684 7 O -0.416 6.416 8 C -0.126 4.126 9 H 0.154 0.846 10 C -0.149 4.149 11 C 0.076 3.924 12 O -0.352 6.352 13 C -0.022 4.022 14 N -0.840 5.840 15 S 2.827 3.173 16 O -0.985 6.985 17 O -0.960 6.960 18 C -0.775 4.775 19 C -0.178 4.178 20 C -0.185 4.185 21 O -0.361 6.361 22 Si 0.675 3.325 23 S 0.381 5.619 24 C -0.342 4.342 25 C -0.122 4.122 26 C -0.165 4.165 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.272 0.728 42 H 0.137 0.863 43 H 0.273 0.727 44 H -0.198 1.198 45 H -0.200 1.200 46 H 0.214 0.786 47 H 0.180 0.820 48 H 0.131 0.869 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.245 6.188 -4.054 8.529 hybrid contribution -0.602 -0.934 0.505 1.221 sum 3.643 5.254 -3.549 7.313 Atomic orbital electron populations 1.22477 0.94318 1.03532 1.03629 1.22413 0.94316 0.93364 0.82702 1.21877 1.02561 0.91145 1.03977 1.22455 1.01912 1.01994 0.97333 1.86569 1.69605 1.25282 1.45563 1.23887 0.76475 0.80545 0.87490 1.90584 1.36222 1.70441 1.44326 1.22580 1.00244 0.94604 0.95158 0.84617 1.23096 0.96532 0.92414 1.02859 1.22023 0.96399 0.92227 0.81787 1.86524 1.38159 1.92409 1.18134 1.21822 0.82586 0.98695 0.99058 1.54841 1.25197 1.30181 1.73782 1.00412 0.72308 0.72375 0.72231 1.93555 1.62558 1.63412 1.79023 1.93535 1.39317 1.86379 1.76755 1.29958 1.10034 1.08991 1.28486 1.24095 0.98483 0.98827 0.96426 1.24580 0.95534 0.93422 1.04972 1.86282 1.41498 1.44103 1.64221 0.93537 0.80940 0.83787 0.74206 1.84572 1.37858 1.32009 1.07492 1.26183 1.02781 1.05307 0.99963 1.19980 1.00396 0.97877 0.93949 1.23625 0.94264 0.95633 1.02999 0.91817 0.89659 0.91917 0.90935 0.88890 0.91293 0.91929 0.89783 0.91486 0.87559 0.89503 0.75541 0.90050 0.90250 0.72805 0.86263 0.72666 1.19754 1.20009 0.78634 0.81968 0.86928 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.40 8.37 71.98 0.60 0.20 16 2 C 0.11 0.15 1.13 -10.79 -0.01 0.14 16 3 C -0.14 0.42 8.85 71.98 0.64 1.06 16 4 C -0.18 -0.23 8.37 71.98 0.60 0.38 16 5 O -0.35 -1.13 9.89 -51.39 -0.51 -1.64 16 6 C 0.47 1.68 6.80 71.24 0.48 2.16 16 7 O -0.53 -4.40 11.40 21.96 0.25 -4.14 16 8 C -0.11 0.18 4.20 -10.95 -0.05 0.14 16 9 H 0.14 -0.40 8.14 -2.39 -0.02 -0.42 16 10 C -0.11 0.10 6.80 31.12 0.21 0.32 16 11 C 0.12 -0.50 1.42 -10.26 -0.01 -0.51 16 12 O -0.54 1.69 13.40 -148.98 -2.00 -0.31 16 13 C 0.11 -0.34 5.85 86.38 0.51 0.16 16 14 N -1.07 4.80 3.73 -187.50 -0.70 4.10 16 15 S 2.74 9.99 4.92 -56.49 -0.28 9.71 16 16 O -1.00 -10.75 16.83 -128.00 -2.15 -12.91 16 17 O -0.97 -6.60 16.55 -121.93 -2.02 -8.61 16 18 C -0.68 -2.50 5.75 21.21 0.12 -2.38 16 19 C -0.06 -0.10 5.77 24.59 0.14 0.04 16 20 C -0.07 0.36 2.12 71.24 0.15 0.51 16 21 O -0.55 5.55 7.91 -136.15 -1.08 4.48 16 22 Si 0.77 -4.97 31.13 68.60 2.14 -2.84 16 23 S 0.12 0.25 20.79 -56.49 -1.17 -0.93 16 24 C -0.21 -0.29 11.23 66.72 0.75 0.46 16 25 C -0.09 -0.34 9.69 21.22 0.21 -0.14 16 26 C -0.13 0.81 7.03 31.18 0.22 1.03 16 27 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 28 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.06 0.43 5.89 -2.38 -0.01 0.41 16 30 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.06 0.36 5.89 -2.38 -0.01 0.35 16 34 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.11 0.03 7.39 -2.39 -0.02 0.01 16 37 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.39 -3.69 7.75 -74.06 -0.57 -4.26 16 39 H 0.08 -0.33 7.98 -2.39 -0.02 -0.35 16 40 H 0.08 -0.05 7.75 -2.39 -0.02 -0.07 16 41 H 0.43 -4.54 6.74 -96.74 -0.65 -5.19 16 42 H 0.12 -0.76 7.92 -2.38 -0.02 -0.78 16 43 H 0.42 -8.70 8.74 -74.06 -0.65 -9.34 16 44 H -0.27 0.20 7.11 99.48 0.71 0.90 16 45 H -0.27 0.03 7.11 99.48 0.71 0.74 16 46 H 0.20 -0.74 8.06 -2.91 -0.02 -0.77 16 47 H 0.16 0.40 7.74 -2.91 -0.02 0.38 16 48 H 0.11 -1.17 8.14 -2.38 -0.02 -1.19 16 49 H 0.10 -0.59 7.94 -2.39 -0.02 -0.61 16 Total: 0.00 -27.15 415.33 -3.78 -30.93 By element: Atomic # 1 Polarization: -20.58 SS G_CDS: -0.82 Total: -21.41 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 4.56 Total: 3.56 kcal Atomic # 7 Polarization: 4.80 SS G_CDS: -0.70 Total: 4.10 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -7.50 Total: -23.14 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.14 Total: -2.84 kcal Atomic # 16 Polarization: 10.24 SS G_CDS: -1.45 Total: 8.79 kcal Total: -27.15 -3.78 -30.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17792080_14772022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.246 kcal (2) G-P(sol) polarization free energy of solvation -27.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds