Wall clock time and date at job start Mon Mar 8 2021 11:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34226 * 116.99826 * 60.00523 * 5 2 1 7 7 O 1.20826 * 120.00044 * 359.97438 * 6 5 2 8 8 C 1.50700 * 119.99715 * 180.02562 * 6 5 2 9 9 H 1.09000 * 112.85209 * 48.80215 * 8 6 5 10 10 C 1.53786 * 113.61354 * 179.97438 * 8 6 5 11 11 C 1.53773 * 87.08373 * 139.98012 * 10 8 6 12 12 O 1.42904 * 113.61543 * 89.11362 * 11 10 8 13 13 C 1.52997 * 113.61491 * 220.01862 * 11 10 8 14 14 N 1.46504 * 109.47397 * 179.97438 * 13 11 10 15 15 S 1.65592 * 120.00297 * 165.00018 * 14 13 11 16 16 O 1.42102 * 106.40570 * 178.54168 * 15 14 13 17 17 O 1.42104 * 106.40386 * 311.45971 * 15 14 13 18 18 C 1.76206 * 107.22032 * 65.00059 * 15 14 13 19 19 C 1.33386 * 122.53925 * 90.02265 * 18 15 14 20 20 S 1.75884 * 109.59413 * 180.02562 * 19 18 15 21 21 C 1.75888 * 90.96948 * 0.02562 * 20 19 18 22 22 C 1.50698 * 125.20330 * 179.97438 * 21 20 19 23 23 O 1.42893 * 109.47179 * 244.97706 * 22 21 20 24 24 Si 1.86305 * 109.46948 * 4.97939 * 22 21 20 25 25 C 1.33393 * 109.59423 * 359.73188 * 21 20 19 26 26 C 1.53780 * 87.08104 * 334.56609 * 11 10 8 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 33 33 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 34 34 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 35 35 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 36 36 H 1.09003 * 113.61131 * 254.52932 * 10 8 6 37 37 H 1.09003 * 113.61355 * 25.42647 * 10 8 6 38 38 H 0.96701 * 114.00140 * 180.02562 * 12 11 10 39 39 H 1.08992 * 109.47324 * 299.99892 * 13 11 10 40 40 H 1.08998 * 109.47198 * 60.00026 * 13 11 10 41 41 H 0.96999 * 119.99615 * 344.99816 * 14 13 11 42 42 H 1.07998 * 125.20163 * 0.02746 * 19 18 15 43 43 H 1.09000 * 109.46800 * 124.97516 * 22 21 20 44 44 H 0.96697 * 114.00020 * 60.00335 * 23 22 21 45 45 H 1.48503 * 109.99991 * 179.97438 * 24 22 21 46 46 H 1.48501 * 109.99804 * 301.31485 * 24 22 21 47 47 H 1.07999 * 122.54136 * 180.24102 * 25 21 20 48 48 H 1.08998 * 113.61592 * 270.88614 * 26 11 10 49 49 H 1.08998 * 113.61449 * 139.98029 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 1 1.9533 -2.2085 3.4797 10 6 1.6191 -4.1979 2.5710 11 6 3.0127 -4.5830 3.0947 12 8 3.1206 -4.5416 4.5190 13 6 3.5561 -5.8809 2.4938 14 7 4.8815 -6.1602 3.0520 15 16 5.5526 -7.6641 2.8793 16 8 6.8346 -7.6040 3.4892 17 8 4.5518 -8.5967 3.2641 18 6 5.8319 -7.9162 1.1579 19 6 6.9728 -7.5725 0.5583 20 16 6.8844 -7.9734 -1.1520 21 6 5.2545 -8.6031 -0.9507 22 6 4.4066 -9.1868 -2.0513 23 8 3.2617 -8.3579 -2.2612 24 14 5.4043 -9.2772 -3.6222 25 6 4.8856 -8.4897 0.3262 26 6 3.5376 -3.3155 2.4000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2489 36 1 0.8188 -4.3721 3.2904 37 1 1.3968 -4.6016 1.5832 38 1 3.9950 -4.7825 4.8544 39 1 2.8806 -6.7024 2.7322 40 1 3.6328 -5.7760 1.4116 41 1 5.3659 -5.4641 3.5227 42 1 7.8211 -7.1178 1.0481 43 1 4.0831 -10.1884 -1.7683 44 1 3.4750 -7.4499 -2.5164 45 1 4.5795 -9.8518 -4.7153 46 1 5.8782 -7.9219 -4.0015 47 1 3.9205 -8.8173 0.6833 48 1 3.8398 -3.4779 1.3654 49 1 4.2862 -2.7772 2.9812 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17792080_15065232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:25 Heat of formation + Delta-G solvation = -169.854087 kcal Electronic energy + Delta-G solvation = -35461.933722 eV Core-core repulsion = 30611.112592 eV Total energy + Delta-G solvation = -4850.821129 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.109 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.24236 -40.81634 -39.60942 -38.33022 -38.02848 -37.74230 -36.94281 -36.17145 -35.56653 -35.00717 -31.94481 -29.34846 -28.42525 -28.39964 -27.31690 -27.10442 -26.00793 -25.02887 -22.68644 -21.54994 -21.05279 -20.55297 -20.41512 -19.38166 -19.07350 -18.30793 -18.02695 -17.93060 -17.59364 -17.53042 -17.11973 -16.85884 -16.52223 -16.41969 -16.01983 -15.69214 -15.50201 -15.42387 -15.12419 -14.97360 -14.70799 -14.37795 -14.32406 -14.23609 -13.91071 -13.80707 -13.57146 -13.46200 -13.41135 -13.22573 -13.18125 -13.11303 -13.01116 -12.99754 -12.93189 -12.88117 -12.53275 -12.52835 -12.40486 -12.36495 -12.08678 -11.67145 -11.64463 -11.39663 -11.19874 -10.95123 -10.83494 -10.79898 -10.34668 -9.95752 -5.21337 -0.87012 -0.57261 0.21479 0.48070 0.90481 1.05172 1.17008 1.38337 1.63228 1.75843 1.89176 2.59767 2.72303 3.01716 3.08215 3.18089 3.25740 3.33368 3.35160 3.51639 3.66678 3.72991 3.73575 3.79578 3.89369 4.03637 4.06059 4.15773 4.18140 4.34264 4.42840 4.45539 4.48236 4.52189 4.53550 4.56383 4.68481 4.70566 4.75892 4.80165 4.80442 4.81263 4.85951 4.97012 4.98415 5.02773 5.21552 5.25646 5.54813 5.56262 6.15739 6.37507 6.82290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.348 6.348 6 C 0.473 3.527 7 O -0.500 6.500 8 C -0.105 4.105 9 H 0.130 0.870 10 C -0.103 4.103 11 C 0.105 3.895 12 O -0.529 6.529 13 C 0.100 3.900 14 N -1.117 6.117 15 S 2.713 3.287 16 O -0.952 6.952 17 O -0.943 6.943 18 C -0.689 4.689 19 C -0.083 4.083 20 S 0.161 5.839 21 C -0.226 4.226 22 C -0.034 4.034 23 O -0.520 6.520 24 Si 0.650 3.350 25 C -0.045 4.045 26 C -0.146 4.146 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.381 0.619 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.417 0.583 42 H 0.186 0.814 43 H 0.131 0.869 44 H 0.377 0.623 45 H -0.232 1.232 46 H -0.239 1.239 47 H 0.158 0.842 48 H 0.097 0.903 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 3.159 -2.758 5.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.266 6.266 6 C 0.317 3.683 7 O -0.388 6.388 8 C -0.124 4.124 9 H 0.148 0.852 10 C -0.140 4.140 11 C 0.062 3.938 12 O -0.335 6.335 13 C -0.027 4.027 14 N -0.879 5.879 15 S 2.799 3.201 16 O -0.942 6.942 17 O -0.933 6.933 18 C -0.788 4.788 19 C -0.222 4.222 20 S 0.425 5.575 21 C -0.343 4.343 22 C -0.147 4.147 23 O -0.327 6.327 24 Si 0.549 3.451 25 C -0.074 4.074 26 C -0.184 4.184 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.133 0.867 38 H 0.230 0.770 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.252 0.748 42 H 0.203 0.797 43 H 0.149 0.851 44 H 0.225 0.775 45 H -0.155 1.155 46 H -0.163 1.163 47 H 0.175 0.825 48 H 0.115 0.885 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.261 2.334 -4.483 6.015 hybrid contribution -0.695 1.338 0.703 1.664 sum 2.566 3.673 -3.779 5.861 Atomic orbital electron populations 1.22500 0.93835 1.04770 1.03015 1.22234 0.94526 0.92374 0.82851 1.21869 1.02274 0.92468 1.03314 1.22492 1.01624 1.03087 0.96809 1.86569 1.69593 1.25191 1.45207 1.23404 0.77107 0.80629 0.87202 1.90591 1.34986 1.70023 1.43218 1.22432 0.98595 0.95196 0.96137 0.85171 1.23083 0.95689 0.91945 1.03321 1.22226 0.97596 0.91895 0.82043 1.86572 1.37720 1.91422 1.17793 1.21951 0.83008 0.99289 0.98425 1.55545 1.27914 1.32833 1.71575 1.01569 0.73250 0.72390 0.72898 1.93628 1.40517 1.85860 1.74201 1.93625 1.59750 1.59731 1.80230 1.30014 1.02363 1.18238 1.28204 1.25922 0.99941 0.98332 0.97972 1.84489 1.11456 1.55477 1.06092 1.25025 0.99044 1.10546 0.99708 1.24416 0.90871 0.96854 1.02550 1.86659 1.29931 1.25950 1.90121 0.95181 0.85899 0.86216 0.77831 1.19646 0.99704 0.97026 0.91004 1.23678 0.95385 0.96759 1.02581 0.91881 0.90851 0.89804 0.91419 0.90171 0.91339 0.89873 0.90856 0.92030 0.88712 0.86741 0.77008 0.88452 0.90075 0.74767 0.79671 0.85142 0.77514 1.15477 1.16341 0.82462 0.88460 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.12 8.37 37.16 0.31 0.19 16 2 C 0.12 0.06 1.13 -90.62 -0.10 -0.04 16 3 C -0.14 0.16 8.85 37.16 0.33 0.48 16 4 C -0.18 -0.04 8.37 37.16 0.31 0.27 16 5 O -0.35 -0.49 9.89 -39.25 -0.39 -0.88 16 6 C 0.47 0.52 6.79 36.01 0.24 0.76 16 7 O -0.50 -1.46 11.40 -18.75 -0.21 -1.67 16 8 C -0.10 0.13 4.20 -90.96 -0.38 -0.25 16 9 H 0.13 -0.20 8.14 -51.93 -0.42 -0.62 16 10 C -0.10 0.15 6.80 -25.92 -0.18 -0.02 16 11 C 0.11 -0.27 1.45 -89.81 -0.13 -0.40 16 12 O -0.53 0.88 13.41 -35.23 -0.47 0.41 16 13 C 0.10 -0.30 5.87 -4.04 -0.02 -0.33 16 14 N -1.12 3.80 5.55 -10.61 -0.06 3.74 16 15 S 2.71 -0.60 5.80 -107.50 -0.62 -1.22 16 16 O -0.95 -2.22 17.64 -57.17 -1.01 -3.22 16 17 O -0.94 -3.01 17.10 -57.17 -0.98 -3.99 16 18 C -0.69 0.51 5.86 -41.21 -0.24 0.27 16 19 C -0.08 0.14 10.70 29.04 0.31 0.45 16 20 S 0.16 -0.30 20.60 -107.50 -2.21 -2.51 16 21 C -0.23 0.22 5.70 -36.00 -0.21 0.01 16 22 C -0.03 0.04 2.96 36.00 0.11 0.15 16 23 O -0.52 0.07 12.88 -35.23 -0.45 -0.38 16 24 Si 0.65 -1.14 30.98 -169.99 -5.27 -6.41 16 25 C -0.05 0.02 9.59 -41.21 -0.40 -0.38 16 26 C -0.15 0.44 7.01 -25.92 -0.18 0.26 16 27 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.08 0.20 5.89 -51.93 -0.31 -0.11 16 30 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 31 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 32 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 33 H 0.08 0.15 5.89 -51.93 -0.31 -0.16 16 34 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 35 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 36 H 0.09 -0.10 8.14 -51.93 -0.42 -0.53 16 37 H 0.11 -0.17 7.39 -51.93 -0.38 -0.55 16 38 H 0.38 -1.75 7.60 45.56 0.35 -1.40 16 39 H 0.10 -0.22 7.75 -51.93 -0.40 -0.62 16 40 H 0.08 -0.34 7.94 -51.93 -0.41 -0.76 16 41 H 0.42 -2.34 7.72 -34.46 -0.27 -2.60 16 42 H 0.19 -0.67 8.00 -52.49 -0.42 -1.09 16 43 H 0.13 -0.26 7.96 -51.93 -0.41 -0.67 16 44 H 0.38 -1.14 8.70 45.56 0.40 -0.74 16 45 H -0.23 -0.25 7.11 56.52 0.40 0.15 16 46 H -0.24 0.07 7.11 56.52 0.40 0.47 16 47 H 0.16 -0.08 7.96 -52.49 -0.42 -0.50 16 48 H 0.10 -0.32 7.91 -51.93 -0.41 -0.73 16 49 H 0.09 -0.34 8.14 -51.93 -0.42 -0.77 16 LS Contribution 425.25 15.07 6.41 6.41 Total: 0.00 -11.03 425.25 -11.91 -22.94 By element: Atomic # 1 Polarization: -8.19 SS G_CDS: -6.42 Total: -14.61 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.22 Total: 1.41 kcal Atomic # 7 Polarization: 3.80 SS G_CDS: -0.06 Total: 3.74 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -3.51 Total: -9.74 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: -5.27 Total: -6.41 kcal Atomic # 16 Polarization: -0.90 SS G_CDS: -2.84 Total: -3.73 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -11.03 -11.91 -22.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17792080_15065232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.915 kcal (2) G-P(sol) polarization free energy of solvation -11.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds