Wall clock time and date at job start Mon Mar 8 2021 11:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34226 * 116.99826 * 60.00523 * 5 2 1 7 7 O 1.20826 * 120.00044 * 359.97438 * 6 5 2 8 8 C 1.50700 * 119.99715 * 180.02562 * 6 5 2 9 9 H 1.09000 * 112.85209 * 48.80215 * 8 6 5 10 10 C 1.53786 * 113.61354 * 179.97438 * 8 6 5 11 11 C 1.53773 * 87.08373 * 139.98012 * 10 8 6 12 12 O 1.42904 * 113.61543 * 89.11362 * 11 10 8 13 13 C 1.52997 * 113.61491 * 220.01862 * 11 10 8 14 14 N 1.46504 * 109.47397 * 179.97438 * 13 11 10 15 15 S 1.65592 * 120.00297 * 165.00018 * 14 13 11 16 16 O 1.42102 * 106.40570 * 178.54168 * 15 14 13 17 17 O 1.42104 * 106.40386 * 311.45971 * 15 14 13 18 18 C 1.76206 * 107.22032 * 65.00059 * 15 14 13 19 19 C 1.33386 * 122.53925 * 90.02265 * 18 15 14 20 20 S 1.75884 * 109.59413 * 180.02562 * 19 18 15 21 21 C 1.75888 * 90.96948 * 0.02562 * 20 19 18 22 22 C 1.50698 * 125.20330 * 179.97438 * 21 20 19 23 23 O 1.42893 * 109.47179 * 244.97706 * 22 21 20 24 24 Si 1.86305 * 109.46948 * 4.97939 * 22 21 20 25 25 C 1.33393 * 109.59423 * 359.73188 * 21 20 19 26 26 C 1.53780 * 87.08104 * 334.56609 * 11 10 8 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 33 33 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 34 34 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 35 35 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 36 36 H 1.09003 * 113.61131 * 254.52932 * 10 8 6 37 37 H 1.09003 * 113.61355 * 25.42647 * 10 8 6 38 38 H 0.96701 * 114.00140 * 180.02562 * 12 11 10 39 39 H 1.08992 * 109.47324 * 299.99892 * 13 11 10 40 40 H 1.08998 * 109.47198 * 60.00026 * 13 11 10 41 41 H 0.96999 * 119.99615 * 344.99816 * 14 13 11 42 42 H 1.07998 * 125.20163 * 0.02746 * 19 18 15 43 43 H 1.09000 * 109.46800 * 124.97516 * 22 21 20 44 44 H 0.96697 * 114.00020 * 60.00335 * 23 22 21 45 45 H 1.48503 * 109.99991 * 179.97438 * 24 22 21 46 46 H 1.48501 * 109.99804 * 301.31485 * 24 22 21 47 47 H 1.07999 * 122.54136 * 180.24102 * 25 21 20 48 48 H 1.08998 * 113.61592 * 270.88614 * 26 11 10 49 49 H 1.08998 * 113.61449 * 139.98029 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 1 1.9533 -2.2085 3.4797 10 6 1.6191 -4.1979 2.5710 11 6 3.0127 -4.5830 3.0947 12 8 3.1206 -4.5416 4.5190 13 6 3.5561 -5.8809 2.4938 14 7 4.8815 -6.1602 3.0520 15 16 5.5526 -7.6641 2.8793 16 8 6.8346 -7.6040 3.4892 17 8 4.5518 -8.5967 3.2641 18 6 5.8319 -7.9162 1.1579 19 6 6.9728 -7.5725 0.5583 20 16 6.8844 -7.9734 -1.1520 21 6 5.2545 -8.6031 -0.9507 22 6 4.4066 -9.1868 -2.0513 23 8 3.2617 -8.3579 -2.2612 24 14 5.4043 -9.2772 -3.6222 25 6 4.8856 -8.4897 0.3262 26 6 3.5376 -3.3155 2.4000 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6768 -1.7490 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2489 36 1 0.8188 -4.3721 3.2904 37 1 1.3968 -4.6016 1.5832 38 1 3.9950 -4.7825 4.8544 39 1 2.8806 -6.7024 2.7322 40 1 3.6328 -5.7760 1.4116 41 1 5.3659 -5.4641 3.5227 42 1 7.8211 -7.1178 1.0481 43 1 4.0831 -10.1884 -1.7683 44 1 3.4750 -7.4499 -2.5164 45 1 4.5795 -9.8518 -4.7153 46 1 5.8782 -7.9219 -4.0015 47 1 3.9205 -8.8173 0.6833 48 1 3.8398 -3.4779 1.3654 49 1 4.2862 -2.7772 2.9812 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17792080_15065232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:23:24 Heat of formation + Delta-G solvation = -174.458359 kcal Electronic energy + Delta-G solvation = -35462.133378 eV Core-core repulsion = 30611.112592 eV Total energy + Delta-G solvation = -4851.020786 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.109 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.23677 -40.72410 -39.51928 -38.42261 -38.07083 -37.67213 -37.04764 -36.06452 -35.40879 -35.01758 -31.85054 -29.21560 -28.44261 -28.36034 -27.21578 -26.93229 -25.92965 -24.94595 -22.62960 -21.47580 -20.93853 -20.52145 -20.35062 -19.28131 -19.02442 -18.29811 -17.96711 -17.87391 -17.54130 -17.48656 -17.13241 -16.76840 -16.42654 -16.31645 -15.95204 -15.63370 -15.45586 -15.36954 -15.07048 -14.89257 -14.69545 -14.26035 -14.22658 -14.13009 -13.86251 -13.71474 -13.45995 -13.39966 -13.36751 -13.32565 -13.22456 -13.15344 -12.99228 -12.96438 -12.92020 -12.83012 -12.53454 -12.52345 -12.33992 -12.30210 -12.02544 -11.59047 -11.52457 -11.44179 -11.11336 -10.83917 -10.74577 -10.67118 -10.23657 -9.83443 -5.09851 -0.82315 -0.47136 0.33591 0.58607 0.97232 1.12193 1.16023 1.46845 1.65072 1.83467 1.99402 2.64999 2.92380 3.15618 3.17741 3.30528 3.42088 3.46826 3.49206 3.60917 3.67530 3.73892 3.86601 3.91175 3.92343 4.17321 4.22126 4.31182 4.39680 4.46913 4.52329 4.53977 4.61691 4.62591 4.69979 4.70960 4.72701 4.76665 4.81763 4.86531 4.90090 4.94351 4.95759 5.04752 5.06672 5.15133 5.19120 5.23005 5.52517 5.88879 6.36021 6.68804 6.76891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.355 6.355 6 C 0.472 3.528 7 O -0.523 6.523 8 C -0.107 4.107 9 H 0.134 0.866 10 C -0.108 4.108 11 C 0.114 3.886 12 O -0.544 6.544 13 C 0.098 3.902 14 N -1.103 6.103 15 S 2.733 3.267 16 O -0.978 6.978 17 O -0.982 6.982 18 C -0.694 4.694 19 C -0.082 4.082 20 S 0.185 5.815 21 C -0.231 4.231 22 C -0.041 4.041 23 O -0.538 6.538 24 Si 0.716 3.284 25 C -0.056 4.056 26 C -0.136 4.136 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.393 0.607 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.430 0.570 42 H 0.206 0.794 43 H 0.135 0.865 44 H 0.388 0.612 45 H -0.274 1.274 46 H -0.255 1.255 47 H 0.153 0.847 48 H 0.104 0.896 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.597 4.125 -3.013 6.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.072 3.928 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.272 6.272 6 C 0.316 3.684 7 O -0.412 6.412 8 C -0.126 4.126 9 H 0.151 0.849 10 C -0.146 4.146 11 C 0.071 3.929 12 O -0.353 6.353 13 C -0.028 4.028 14 N -0.867 5.867 15 S 2.821 3.179 16 O -0.968 6.968 17 O -0.972 6.972 18 C -0.795 4.795 19 C -0.221 4.221 20 S 0.449 5.551 21 C -0.349 4.349 22 C -0.153 4.153 23 O -0.346 6.346 24 Si 0.617 3.383 25 C -0.085 4.085 26 C -0.174 4.174 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.130 0.870 38 H 0.244 0.756 39 H 0.107 0.893 40 H 0.114 0.886 41 H 0.268 0.732 42 H 0.223 0.777 43 H 0.153 0.847 44 H 0.237 0.763 45 H -0.200 1.200 46 H -0.180 1.180 47 H 0.171 0.829 48 H 0.122 0.878 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.606 3.317 -4.691 7.364 hybrid contribution -1.155 1.072 0.722 1.733 sum 3.451 4.388 -3.969 6.850 Atomic orbital electron populations 1.22474 0.94230 1.03612 1.03607 1.22424 0.94374 0.93302 0.82749 1.21882 1.02468 0.91313 1.03976 1.22452 1.01876 1.02115 0.97196 1.86573 1.69649 1.25371 1.45646 1.23841 0.76555 0.80531 0.87466 1.90585 1.36002 1.70395 1.44226 1.22525 0.99972 0.94873 0.95203 0.84859 1.23106 0.96295 0.92056 1.03145 1.22088 0.96772 0.92195 0.81808 1.86545 1.38950 1.91551 1.18207 1.22005 0.82701 0.98767 0.99330 1.55172 1.27753 1.32155 1.71638 1.00652 0.72130 0.72362 0.72768 1.93588 1.41640 1.86420 1.75165 1.93578 1.60760 1.61605 1.81251 1.29814 1.02892 1.19298 1.27515 1.26238 1.00082 0.97579 0.98225 1.84413 1.10315 1.54748 1.05645 1.25081 0.99739 1.10588 0.99509 1.24579 0.90773 0.97024 1.02895 1.86629 1.30789 1.26937 1.90252 0.94425 0.84380 0.84080 0.75376 1.19699 0.99850 0.97565 0.91421 1.23674 0.94527 0.96044 1.03130 0.91920 0.89630 0.91767 0.91089 0.88815 0.91393 0.91643 0.89774 0.91523 0.89441 0.86977 0.75605 0.89347 0.88562 0.73244 0.77743 0.84710 0.76266 1.19975 1.17962 0.82927 0.87805 0.87676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.34 8.37 71.98 0.60 0.26 16 2 C 0.11 0.12 1.13 -10.79 -0.01 0.11 16 3 C -0.14 0.40 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.09 8.37 71.98 0.60 0.52 16 5 O -0.36 -1.10 9.89 -51.38 -0.51 -1.61 16 6 C 0.47 1.36 6.79 71.24 0.48 1.84 16 7 O -0.52 -3.73 11.40 21.96 0.25 -3.48 16 8 C -0.11 0.23 4.20 -11.01 -0.05 0.19 16 9 H 0.13 -0.38 8.14 -2.39 -0.02 -0.40 16 10 C -0.11 0.25 6.80 31.12 0.21 0.46 16 11 C 0.11 -0.62 1.45 -10.27 -0.01 -0.63 16 12 O -0.54 1.98 13.41 -148.98 -2.00 -0.02 16 13 C 0.10 -0.61 5.87 86.38 0.51 -0.10 16 14 N -1.10 7.87 5.55 -187.50 -1.04 6.83 16 15 S 2.73 -0.46 5.80 -56.49 -0.33 -0.79 16 16 O -0.98 -4.56 17.64 -128.00 -2.26 -6.82 16 17 O -0.98 -7.33 17.10 -128.00 -2.19 -9.52 16 18 C -0.69 1.17 5.86 21.22 0.12 1.30 16 19 C -0.08 0.36 10.70 66.72 0.71 1.07 16 20 S 0.18 -0.87 20.60 -56.49 -1.16 -2.04 16 21 C -0.23 0.49 5.70 24.59 0.14 0.63 16 22 C -0.04 0.10 2.96 71.24 0.21 0.31 16 23 O -0.54 -0.05 12.88 -148.98 -1.92 -1.97 16 24 Si 0.72 -2.46 30.98 68.60 2.13 -0.33 16 25 C -0.06 0.03 9.59 21.22 0.20 0.23 16 26 C -0.14 0.92 7.01 31.12 0.22 1.14 16 27 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 28 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.06 0.40 5.89 -2.38 -0.01 0.38 16 30 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.06 0.29 5.89 -2.38 -0.01 0.28 16 34 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.11 -0.21 7.39 -2.39 -0.02 -0.23 16 38 H 0.39 -3.87 7.60 -74.06 -0.56 -4.43 16 39 H 0.09 -0.34 7.75 -2.39 -0.02 -0.35 16 40 H 0.10 -0.86 7.94 -2.39 -0.02 -0.88 16 41 H 0.43 -5.19 7.72 -96.75 -0.75 -5.94 16 42 H 0.21 -1.81 8.00 -2.91 -0.02 -1.83 16 43 H 0.14 -0.49 7.96 -2.39 -0.02 -0.51 16 44 H 0.39 -2.25 8.70 -74.06 -0.64 -2.90 16 45 H -0.27 -0.96 7.11 99.48 0.71 -0.25 16 46 H -0.25 0.26 7.11 99.48 0.71 0.96 16 47 H 0.15 0.00 7.96 -2.91 -0.02 -0.03 16 48 H 0.10 -0.80 7.91 -2.39 -0.02 -0.82 16 49 H 0.10 -0.97 8.14 -2.39 -0.02 -0.99 16 Total: 0.00 -25.36 425.25 -5.35 -30.70 By element: Atomic # 1 Polarization: -18.43 SS G_CDS: -0.90 Total: -19.33 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 4.58 Total: 8.36 kcal Atomic # 7 Polarization: 7.87 SS G_CDS: -1.04 Total: 6.83 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -8.62 Total: -23.41 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: 2.13 Total: -0.33 kcal Atomic # 16 Polarization: -1.33 SS G_CDS: -1.49 Total: -2.82 kcal Total: -25.36 -5.35 -30.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17792080_15065232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.756 kcal (2) G-P(sol) polarization free energy of solvation -25.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds