Wall clock time and date at job start Mon Mar 8 2021 10:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42097 * 108.57650 * 2 1 4 4 O 1.42093 * 108.57653 * 228.97573 * 2 1 3 5 5 C 1.81399 * 101.91991 * 114.48810 * 2 1 3 6 6 H 1.08995 * 112.90719 * 53.75190 * 5 2 1 7 7 C 1.53783 * 113.61198 * 185.00248 * 5 2 1 8 8 C 1.53780 * 87.17456 * 140.02360 * 7 5 2 9 9 H 1.08993 * 113.61641 * 219.89223 * 8 7 5 10 10 C 1.53002 * 113.61512 * 89.06984 * 8 7 5 11 11 N 1.46495 * 109.47159 * 174.99944 * 10 8 7 12 12 S 1.65598 * 120.00106 * 165.49901 * 11 10 8 13 13 O 1.42106 * 106.40334 * 177.37668 * 12 11 10 14 14 O 1.42102 * 106.40393 * 310.29588 * 12 11 10 15 15 C 1.76197 * 107.21874 * 63.83556 * 12 11 10 16 16 C 1.33389 * 122.54120 * 67.67049 * 15 12 11 17 17 C 1.50700 * 125.20137 * 359.97438 * 16 15 12 18 18 O 1.42905 * 109.46924 * 319.13248 * 17 16 15 19 19 Si 1.86302 * 109.47114 * 199.13429 * 17 16 15 20 20 S 1.75884 * 109.59486 * 180.02562 * 16 15 12 21 21 C 1.75887 * 90.96905 * 359.97438 * 20 16 15 22 22 C 1.33386 * 109.59343 * 359.73161 * 21 20 16 23 23 C 1.53788 * 87.08019 * 334.52509 * 8 7 5 24 24 H 1.08995 * 109.47284 * 305.50862 * 1 2 3 25 25 H 1.08998 * 109.46772 * 65.51289 * 1 2 3 26 26 H 1.08999 * 109.46684 * 185.51060 * 1 2 3 27 27 H 1.08998 * 113.61811 * 25.42966 * 7 5 2 28 28 H 1.09000 * 113.61171 * 254.61491 * 7 5 2 29 29 H 1.09003 * 109.47395 * 295.00525 * 10 8 7 30 30 H 1.09000 * 109.47133 * 55.00300 * 10 8 7 31 31 H 0.97000 * 120.00367 * 345.50310 * 11 10 8 32 32 H 1.08998 * 109.47574 * 79.13055 * 17 16 15 33 33 H 0.96702 * 113.99368 * 180.02562 * 18 17 16 34 34 H 1.48497 * 110.00062 * 298.68131 * 19 17 16 35 35 H 1.48504 * 109.99960 * 60.00091 * 19 17 16 36 36 H 1.07995 * 125.19786 * 180.02562 * 21 20 16 37 37 H 1.07997 * 122.53786 * 180.23219 * 22 21 20 38 38 H 1.08999 * 113.61276 * 139.98276 * 23 8 7 39 39 H 1.08998 * 113.61138 * 270.88250 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6152 6 1 1.6955 -1.6954 1.7689 7 6 3.6894 -0.7535 1.9508 8 6 3.2945 -0.3804 3.3894 9 1 3.9621 0.3472 3.8507 10 6 3.0256 -1.5915 4.2849 11 7 2.7758 -1.1394 5.6557 12 16 2.1086 -2.1764 6.7610 13 8 2.0527 -1.4690 7.9922 14 8 0.9646 -2.7447 6.1385 15 6 3.2535 -3.4950 6.9964 16 6 4.4387 -3.3200 7.5828 17 6 4.9599 -2.0098 8.1145 18 8 4.6277 -0.9601 7.2035 19 14 6.8110 -2.1076 8.3010 20 16 5.3007 -4.8521 7.6392 21 6 3.9631 -5.6683 6.8403 22 6 2.9884 -4.7922 6.5924 23 6 2.0197 0.2409 2.7945 24 1 -0.3633 0.5969 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 4.2604 0.0216 1.4397 28 1 4.1443 -1.7403 1.8648 29 1 2.1531 -2.1302 3.9152 30 1 3.8925 -2.2521 4.2725 31 1 3.0012 -0.2326 5.9160 32 1 4.5073 -1.8055 9.0848 33 1 4.9333 -0.0861 7.4823 34 1 7.1682 -3.1745 9.2702 35 1 7.4401 -2.3856 6.9848 36 1 3.9335 -6.7191 6.5930 37 1 2.0643 -5.0727 6.1090 38 1 1.1253 0.0564 3.3897 39 1 2.1342 1.2880 2.5142 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17836388_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:33 Heat of formation + Delta-G solvation = -92.091294 kcal Electronic energy + Delta-G solvation = -27906.171190 eV Core-core repulsion = 23777.631785 eV Total energy + Delta-G solvation = -4128.539405 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.035 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.56414 -39.61871 -38.28373 -37.94526 -37.51359 -36.99285 -36.71941 -35.54949 -32.06438 -30.66179 -28.74953 -27.56921 -27.00736 -25.19072 -24.32519 -21.83756 -20.78662 -19.87683 -19.75275 -19.07364 -18.67255 -18.46677 -18.10283 -17.79546 -17.20279 -16.97224 -16.95720 -16.31174 -16.06575 -15.68681 -15.46283 -15.13408 -15.05280 -14.53700 -14.44658 -14.25533 -14.21762 -14.12048 -13.81123 -13.79371 -13.71778 -13.24217 -13.04221 -13.03524 -12.97834 -12.92277 -12.86329 -12.66264 -12.62772 -12.22354 -12.03996 -11.84403 -11.79788 -11.69248 -11.07226 -10.94839 -10.40793 -10.19024 -9.84737 -5.41851 -1.01181 -0.65938 -0.47402 0.22515 0.57829 0.90305 1.08042 1.36936 1.67868 1.69161 2.11031 2.50484 2.72930 2.78110 2.97256 3.11330 3.27626 3.32145 3.39900 3.41983 3.56919 3.80437 3.90198 4.00990 4.04393 4.14461 4.21170 4.26385 4.35429 4.37926 4.42951 4.56503 4.64977 4.65783 4.71165 4.78430 4.81699 4.97178 5.06106 5.09802 6.11726 6.19596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 2.423 3.577 3 O -0.936 6.936 4 O -0.940 6.940 5 C -0.611 4.611 6 H 0.154 0.846 7 C -0.100 4.100 8 C -0.102 4.102 9 H 0.100 0.900 10 C 0.136 3.864 11 N -1.089 6.089 12 S 2.724 3.276 13 O -0.952 6.952 14 O -0.964 6.964 15 C -0.664 4.664 16 C -0.053 4.053 17 C -0.067 4.067 18 O -0.544 6.544 19 Si 0.688 3.312 20 S 0.135 5.865 21 C -0.210 4.210 22 C -0.076 4.076 23 C -0.113 4.113 24 H 0.130 0.870 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.101 0.899 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.422 0.578 32 H 0.110 0.890 33 H 0.396 0.604 34 H -0.237 1.237 35 H -0.236 1.236 36 H 0.177 0.823 37 H 0.160 0.840 38 H 0.091 0.909 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 1.316 3.045 4.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.605 3.395 3 O -0.933 6.933 4 O -0.937 6.937 5 C -0.720 4.720 6 H 0.172 0.828 7 C -0.140 4.140 8 C -0.122 4.122 9 H 0.118 0.882 10 C 0.009 3.991 11 N -0.851 5.851 12 S 2.809 3.191 13 O -0.942 6.942 14 O -0.954 6.954 15 C -0.763 4.763 16 C -0.173 4.173 17 C -0.179 4.179 18 O -0.353 6.353 19 Si 0.586 3.414 20 S 0.398 5.602 21 C -0.345 4.345 22 C -0.105 4.105 23 C -0.151 4.151 24 H 0.148 0.852 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.119 0.881 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.259 0.741 32 H 0.127 0.873 33 H 0.247 0.753 34 H -0.161 1.161 35 H -0.160 1.160 36 H 0.194 0.806 37 H 0.178 0.822 38 H 0.110 0.890 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.448 -0.031 2.845 5.280 hybrid contribution -1.757 -0.445 0.013 1.813 sum 2.691 -0.476 2.859 3.955 Atomic orbital electron populations 1.30230 1.26628 1.11715 1.11866 1.07796 0.78482 0.75863 0.77310 1.93605 1.79216 1.34178 1.86350 1.93607 1.79134 1.67023 1.53960 1.31845 1.07739 1.12413 1.19998 0.82792 1.22636 0.90589 1.04360 0.96370 1.22356 0.97877 0.97603 0.94409 0.88226 1.21054 1.01532 0.95931 0.80549 1.55219 1.82477 1.26437 1.20986 1.01118 0.72561 0.72507 0.72899 1.93568 1.86239 1.71537 1.42850 1.93580 1.45579 1.79075 1.77207 1.30002 1.13739 1.16653 1.15893 1.23709 0.95645 0.98559 0.99393 1.24453 1.12801 0.84786 0.95845 1.86336 1.82405 1.19136 1.47472 0.94440 0.74378 0.89480 0.83092 1.84516 1.19818 0.99239 1.56594 1.25921 0.97271 1.04349 1.06978 1.19805 1.00790 0.89828 1.00033 1.22907 1.00162 0.98106 0.93968 0.85177 0.85273 0.85284 0.88104 0.89057 0.90256 0.91388 0.74063 0.87258 0.75307 1.16105 1.15971 0.80591 0.82216 0.89011 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 2.32 10.62 101.05 1.07 3.40 16 2 S 2.42 -2.48 5.30 -107.50 -0.57 -3.05 16 3 O -0.94 -2.18 17.35 -57.83 -1.00 -3.18 16 4 O -0.94 -3.09 18.10 -57.83 -1.05 -4.14 16 5 C -0.61 1.97 3.83 -25.77 -0.10 1.87 16 6 H 0.15 -0.79 7.72 -51.93 -0.40 -1.19 16 7 C -0.10 0.28 7.25 -25.92 -0.19 0.10 16 8 C -0.10 0.35 3.98 -89.80 -0.36 0.00 16 9 H 0.10 -0.45 8.12 -51.93 -0.42 -0.88 16 10 C 0.14 -0.33 5.88 -4.04 -0.02 -0.36 16 11 N -1.09 2.06 4.21 -10.61 -0.04 2.01 16 12 S 2.72 4.59 4.91 -107.50 -0.53 4.06 16 13 O -0.95 -3.58 16.51 -64.05 -1.06 -4.64 16 14 O -0.96 -4.18 16.86 -57.17 -0.96 -5.14 16 15 C -0.66 -1.03 5.75 -41.21 -0.24 -1.27 16 16 C -0.05 -0.05 5.77 -36.00 -0.21 -0.25 16 17 C -0.07 0.13 2.15 36.01 0.08 0.20 16 18 O -0.54 2.12 7.76 -50.45 -0.39 1.73 16 19 Si 0.69 -2.06 31.15 -169.99 -5.30 -7.35 16 20 S 0.14 0.09 20.82 -107.50 -2.24 -2.15 16 21 C -0.21 -0.04 11.23 29.04 0.33 0.29 16 22 C -0.08 -0.09 9.69 -41.21 -0.40 -0.49 16 23 C -0.11 0.40 7.17 -25.77 -0.18 0.22 16 24 H 0.13 -0.67 8.14 -51.93 -0.42 -1.09 16 25 H 0.13 -0.45 8.14 -51.93 -0.42 -0.87 16 26 H 0.13 -0.64 8.14 -51.92 -0.42 -1.07 16 27 H 0.10 -0.29 8.10 -51.93 -0.42 -0.71 16 28 H 0.09 -0.31 8.10 -51.93 -0.42 -0.73 16 29 H 0.08 -0.19 7.04 -51.93 -0.37 -0.55 16 30 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 31 H 0.42 -1.68 7.49 -34.46 -0.26 -1.94 16 32 H 0.11 -0.27 7.95 -51.93 -0.41 -0.68 16 33 H 0.40 -3.45 8.74 45.56 0.40 -3.05 16 34 H -0.24 0.15 7.11 56.52 0.40 0.55 16 35 H -0.24 0.05 7.11 56.52 0.40 0.45 16 36 H 0.18 -0.40 8.06 -52.49 -0.42 -0.82 16 37 H 0.16 0.02 7.74 -52.49 -0.41 -0.39 16 38 H 0.09 -0.38 8.10 -51.93 -0.42 -0.80 16 39 H 0.11 -0.41 7.49 -51.93 -0.39 -0.79 16 LS Contribution 357.73 15.07 5.39 5.39 Total: 0.00 -15.14 357.73 -12.80 -27.94 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: -4.83 Total: -15.17 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.22 Total: 3.69 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: -0.04 Total: 2.01 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -4.46 Total: -15.38 kcal Atomic # 14 Polarization: -2.06 SS G_CDS: -5.30 Total: -7.35 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -3.34 Total: -1.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -15.14 -12.80 -27.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17836388_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.152 kcal (2) G-P(sol) polarization free energy of solvation -15.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds