Wall clock time and date at job start Mon Mar 8 2021 10:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42097 * 108.57650 * 2 1 4 4 O 1.42093 * 108.57653 * 228.97573 * 2 1 3 5 5 C 1.81399 * 101.91991 * 114.48810 * 2 1 3 6 6 H 1.08995 * 112.90719 * 53.75190 * 5 2 1 7 7 C 1.53783 * 113.61198 * 185.00248 * 5 2 1 8 8 C 1.53780 * 87.17456 * 140.02360 * 7 5 2 9 9 H 1.08993 * 113.61641 * 219.89223 * 8 7 5 10 10 C 1.53002 * 113.61512 * 89.06984 * 8 7 5 11 11 N 1.46495 * 109.47159 * 174.99944 * 10 8 7 12 12 S 1.65598 * 120.00106 * 165.49901 * 11 10 8 13 13 O 1.42106 * 106.40334 * 177.37668 * 12 11 10 14 14 O 1.42102 * 106.40393 * 310.29588 * 12 11 10 15 15 C 1.76197 * 107.21874 * 63.83556 * 12 11 10 16 16 C 1.33389 * 122.54120 * 67.67049 * 15 12 11 17 17 C 1.50700 * 125.20137 * 359.97438 * 16 15 12 18 18 O 1.42905 * 109.46924 * 319.13248 * 17 16 15 19 19 Si 1.86302 * 109.47114 * 199.13429 * 17 16 15 20 20 S 1.75884 * 109.59486 * 180.02562 * 16 15 12 21 21 C 1.75887 * 90.96905 * 359.97438 * 20 16 15 22 22 C 1.33386 * 109.59343 * 359.73161 * 21 20 16 23 23 C 1.53788 * 87.08019 * 334.52509 * 8 7 5 24 24 H 1.08995 * 109.47284 * 305.50862 * 1 2 3 25 25 H 1.08998 * 109.46772 * 65.51289 * 1 2 3 26 26 H 1.08999 * 109.46684 * 185.51060 * 1 2 3 27 27 H 1.08998 * 113.61811 * 25.42966 * 7 5 2 28 28 H 1.09000 * 113.61171 * 254.61491 * 7 5 2 29 29 H 1.09003 * 109.47395 * 295.00525 * 10 8 7 30 30 H 1.09000 * 109.47133 * 55.00300 * 10 8 7 31 31 H 0.97000 * 120.00367 * 345.50310 * 11 10 8 32 32 H 1.08998 * 109.47574 * 79.13055 * 17 16 15 33 33 H 0.96702 * 113.99368 * 180.02562 * 18 17 16 34 34 H 1.48497 * 110.00062 * 298.68131 * 19 17 16 35 35 H 1.48504 * 109.99960 * 60.00091 * 19 17 16 36 36 H 1.07995 * 125.19786 * 180.02562 * 21 20 16 37 37 H 1.07997 * 122.53786 * 180.23219 * 22 21 20 38 38 H 1.08999 * 113.61276 * 139.98276 * 23 8 7 39 39 H 1.08998 * 113.61138 * 270.88250 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0161 5 6 2.1887 -0.7357 1.6152 6 1 1.6955 -1.6954 1.7689 7 6 3.6894 -0.7535 1.9508 8 6 3.2945 -0.3804 3.3894 9 1 3.9621 0.3472 3.8507 10 6 3.0256 -1.5915 4.2849 11 7 2.7758 -1.1394 5.6557 12 16 2.1086 -2.1764 6.7610 13 8 2.0527 -1.4690 7.9922 14 8 0.9646 -2.7447 6.1385 15 6 3.2535 -3.4950 6.9964 16 6 4.4387 -3.3200 7.5828 17 6 4.9599 -2.0098 8.1145 18 8 4.6277 -0.9601 7.2035 19 14 6.8110 -2.1076 8.3010 20 16 5.3007 -4.8521 7.6392 21 6 3.9631 -5.6683 6.8403 22 6 2.9884 -4.7922 6.5924 23 6 2.0197 0.2409 2.7945 24 1 -0.3633 0.5969 0.8365 25 1 -0.3633 0.4260 -0.9352 26 1 -0.3633 -1.0229 0.0987 27 1 4.2604 0.0216 1.4397 28 1 4.1443 -1.7403 1.8648 29 1 2.1531 -2.1302 3.9152 30 1 3.8925 -2.2521 4.2725 31 1 3.0012 -0.2326 5.9160 32 1 4.5073 -1.8055 9.0848 33 1 4.9333 -0.0861 7.4823 34 1 7.1682 -3.1745 9.2702 35 1 7.4401 -2.3856 6.9848 36 1 3.9335 -6.7191 6.5930 37 1 2.0643 -5.0727 6.1090 38 1 1.1253 0.0564 3.3897 39 1 2.1342 1.2880 2.5142 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17836388_14772022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:33 Heat of formation + Delta-G solvation = -101.597717 kcal Electronic energy + Delta-G solvation = -27906.583420 eV Core-core repulsion = 23777.631785 eV Total energy + Delta-G solvation = -4128.951635 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.035 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.32964 -39.55378 -38.39343 -37.98711 -37.38716 -37.03568 -36.91245 -35.42302 -31.99812 -30.41548 -28.56719 -27.51594 -26.74014 -24.99882 -24.27267 -21.84907 -20.63446 -19.89614 -19.63423 -18.95871 -18.61335 -18.31535 -18.03835 -17.79190 -17.10570 -16.94637 -16.88359 -16.19369 -15.99541 -15.55562 -15.36417 -15.09961 -14.95219 -14.46529 -14.25727 -14.14413 -13.98371 -13.90726 -13.77846 -13.66703 -13.55585 -13.24629 -13.19663 -13.12158 -13.05712 -12.89870 -12.76394 -12.71442 -12.58109 -12.15122 -11.95563 -11.87783 -11.52905 -11.45269 -10.89357 -10.78594 -10.26543 -10.19036 -9.83327 -5.20083 -0.88883 -0.68652 -0.52654 0.22279 0.57574 1.00692 1.12858 1.56120 1.85592 1.85903 2.11788 2.66025 2.72510 2.95278 3.09437 3.33237 3.42364 3.47265 3.57801 3.61979 3.72529 4.05301 4.09480 4.20294 4.23070 4.29932 4.40703 4.45455 4.51462 4.63612 4.65616 4.71285 4.80624 4.84795 4.97117 5.01249 5.04004 5.06002 5.17151 5.36529 6.37115 6.76971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.419 3.581 3 O -0.979 6.979 4 O -0.993 6.993 5 C -0.596 4.596 6 H 0.177 0.823 7 C -0.113 4.113 8 C -0.095 4.095 9 H 0.114 0.886 10 C 0.130 3.870 11 N -1.074 6.074 12 S 2.736 3.264 13 O -0.976 6.976 14 O -0.994 6.994 15 C -0.677 4.677 16 C -0.061 4.061 17 C -0.076 4.076 18 O -0.549 6.549 19 Si 0.776 3.224 20 S 0.118 5.882 21 C -0.207 4.207 22 C -0.093 4.093 23 C -0.116 4.116 24 H 0.152 0.848 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.433 0.567 32 H 0.117 0.883 33 H 0.418 0.582 34 H -0.271 1.271 35 H -0.274 1.274 36 H 0.198 0.802 37 H 0.165 0.835 38 H 0.103 0.897 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 1.714 3.781 4.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.608 3.392 3 O -0.976 6.976 4 O -0.990 6.990 5 C -0.708 4.708 6 H 0.194 0.806 7 C -0.152 4.152 8 C -0.116 4.116 9 H 0.132 0.868 10 C 0.004 3.996 11 N -0.840 5.840 12 S 2.822 3.178 13 O -0.966 6.966 14 O -0.984 6.984 15 C -0.776 4.776 16 C -0.181 4.181 17 C -0.187 4.187 18 O -0.362 6.362 19 Si 0.677 3.323 20 S 0.381 5.619 21 C -0.342 4.342 22 C -0.121 4.121 23 C -0.154 4.154 24 H 0.170 0.830 25 H 0.148 0.852 26 H 0.167 0.833 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.273 0.727 32 H 0.135 0.865 33 H 0.273 0.727 34 H -0.197 1.197 35 H -0.200 1.200 36 H 0.215 0.785 37 H 0.183 0.817 38 H 0.122 0.878 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.140 0.428 3.565 5.480 hybrid contribution -1.650 -0.598 -0.196 1.766 sum 2.489 -0.170 3.370 4.193 Atomic orbital electron populations 1.30118 1.23044 1.13577 1.12963 1.07541 0.79623 0.74490 0.77571 1.93544 1.80803 1.36053 1.87193 1.93537 1.80945 1.67774 1.56791 1.31770 1.07884 1.13397 1.17705 0.80566 1.22766 0.90844 1.04695 0.96920 1.22301 0.98164 0.97407 0.93744 0.86806 1.21185 1.01814 0.96505 0.80096 1.54906 1.82136 1.26339 1.20602 1.00490 0.72343 0.72346 0.72585 1.93527 1.86735 1.72060 1.44278 1.93539 1.47457 1.79763 1.77661 1.30010 1.13985 1.16808 1.16754 1.24103 0.95465 0.99634 0.98916 1.24611 1.13515 0.84373 0.96199 1.86279 1.82644 1.20121 1.47158 0.93478 0.71864 0.87602 0.79333 1.84584 1.20445 0.99876 1.57018 1.26195 0.96566 1.05274 1.06167 1.19985 1.01365 0.90047 1.00728 1.23015 1.00686 0.98122 0.93552 0.82997 0.85209 0.83316 0.88462 0.88550 0.90165 0.91083 0.72716 0.86540 0.72719 1.19670 1.19983 0.78520 0.81740 0.87799 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 5.20 10.62 113.37 1.20 6.41 16 2 S 2.42 -3.23 5.30 -56.49 -0.30 -3.53 16 3 O -0.98 -5.86 17.35 -127.37 -2.21 -8.07 16 4 O -0.99 -8.22 18.10 -127.37 -2.30 -10.53 16 5 C -0.60 4.20 3.83 31.21 0.12 4.32 16 6 H 0.18 -2.06 7.72 -2.39 -0.02 -2.08 16 7 C -0.11 0.67 7.25 31.12 0.23 0.89 16 8 C -0.10 0.77 3.98 -10.26 -0.04 0.73 16 9 H 0.11 -1.22 8.12 -2.39 -0.02 -1.24 16 10 C 0.13 -0.78 5.88 86.38 0.51 -0.27 16 11 N -1.07 5.07 4.21 -187.49 -0.79 4.28 16 12 S 2.74 8.95 4.91 -56.49 -0.28 8.67 16 13 O -0.98 -7.25 16.51 -121.42 -2.00 -9.25 16 14 O -0.99 -8.79 16.86 -128.00 -2.16 -10.94 16 15 C -0.68 -2.22 5.75 21.22 0.12 -2.10 16 16 C -0.06 -0.11 5.77 24.59 0.14 0.03 16 17 C -0.08 0.33 2.15 71.24 0.15 0.48 16 18 O -0.55 4.90 7.76 -134.42 -1.04 3.86 16 19 Si 0.78 -4.81 31.15 68.60 2.14 -2.68 16 20 S 0.12 0.20 20.82 -56.49 -1.18 -0.98 16 21 C -0.21 -0.09 11.23 66.72 0.75 0.66 16 22 C -0.09 -0.24 9.69 21.22 0.21 -0.03 16 23 C -0.12 0.96 7.17 31.22 0.22 1.19 16 24 H 0.15 -1.86 8.14 -2.39 -0.02 -1.88 16 25 H 0.13 -0.97 8.14 -2.39 -0.02 -0.99 16 26 H 0.15 -1.74 8.14 -2.39 -0.02 -1.76 16 27 H 0.10 -0.49 8.10 -2.39 -0.02 -0.51 16 28 H 0.10 -0.67 8.10 -2.39 -0.02 -0.69 16 29 H 0.08 -0.47 7.04 -2.39 -0.02 -0.48 16 30 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.43 -4.06 7.49 -96.75 -0.73 -4.79 16 32 H 0.12 -0.65 7.95 -2.39 -0.02 -0.67 16 33 H 0.42 -8.06 8.74 -74.06 -0.65 -8.70 16 34 H -0.27 0.20 7.11 99.48 0.71 0.91 16 35 H -0.27 0.00 7.11 99.48 0.71 0.71 16 36 H 0.20 -0.98 8.06 -2.91 -0.02 -1.00 16 37 H 0.17 0.13 7.74 -2.91 -0.02 0.10 16 38 H 0.10 -1.08 8.10 -2.39 -0.02 -1.09 16 39 H 0.11 -0.92 7.49 -2.39 -0.02 -0.93 16 Total: 0.00 -35.66 357.73 -6.75 -42.40 By element: Atomic # 1 Polarization: -25.32 SS G_CDS: -0.23 Total: -25.55 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 3.61 Total: 12.31 kcal Atomic # 7 Polarization: 5.07 SS G_CDS: -0.79 Total: 4.28 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -9.72 Total: -34.93 kcal Atomic # 14 Polarization: -4.81 SS G_CDS: 2.14 Total: -2.68 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -1.75 Total: 4.16 kcal Total: -35.66 -6.75 -42.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17836388_14772022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.193 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds