Wall clock time and date at job start Mon Mar 8 2021 10:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 O 1.42096 * 108.57913 * 2 1 4 4 O 1.42109 * 108.57977 * 228.97852 * 2 1 3 5 5 C 1.81398 * 101.92388 * 114.49279 * 2 1 3 6 6 H 1.09002 * 112.84901 * 311.18991 * 5 2 1 7 7 C 1.53950 * 113.74657 * 82.40006 * 5 2 1 8 8 C 1.53781 * 87.02176 * 139.94447 * 7 5 2 9 9 H 1.08991 * 113.61771 * 220.04914 * 8 7 5 10 10 C 1.53006 * 113.61568 * 89.22767 * 8 7 5 11 11 N 1.46497 * 109.46989 * 85.86167 * 10 8 7 12 12 S 1.65596 * 119.99803 * 164.39667 * 11 10 8 13 13 O 1.42104 * 106.40242 * 177.95629 * 12 11 10 14 14 O 1.42105 * 106.40447 * 310.87410 * 12 11 10 15 15 C 1.76198 * 107.21944 * 64.41837 * 12 11 10 16 16 C 1.38212 * 119.99797 * 63.52942 * 15 12 11 17 17 C 1.50696 * 120.00439 * 0.02562 * 16 15 12 18 18 O 1.42908 * 109.47150 * 75.63729 * 17 16 15 19 19 Si 1.86303 * 109.47418 * 195.64072 * 17 16 15 20 20 C 1.38263 * 119.99917 * 179.79049 * 16 15 12 21 21 C 1.38215 * 119.99531 * 0.43941 * 20 16 15 22 22 C 1.38251 * 120.00161 * 359.82031 * 21 20 16 23 23 C 1.38211 * 120.00446 * 359.97018 * 22 21 20 24 24 C 1.53781 * 113.61673 * 180.02562 * 5 2 1 25 25 H 1.08998 * 109.47073 * 305.51118 * 1 2 3 26 26 H 1.08993 * 109.47469 * 65.51320 * 1 2 3 27 27 H 1.09006 * 109.47408 * 185.51190 * 1 2 3 28 28 H 1.09001 * 113.61235 * 25.42424 * 7 5 2 29 29 H 1.08998 * 113.66819 * 254.47084 * 7 5 2 30 30 H 1.08994 * 109.47047 * 205.87067 * 10 8 7 31 31 H 1.09003 * 109.46626 * 325.86745 * 10 8 7 32 32 H 0.96996 * 120.00099 * 344.40353 * 11 10 8 33 33 H 1.09004 * 109.46968 * 315.64345 * 17 16 15 34 34 H 0.96695 * 113.99815 * 65.23457 * 18 17 16 35 35 H 1.48495 * 109.99782 * 58.67665 * 19 17 16 36 36 H 1.48500 * 109.99597 * 179.97438 * 19 17 16 37 37 H 1.07994 * 120.00410 * 180.27978 * 20 16 15 38 38 H 1.08007 * 119.99701 * 179.83372 * 21 20 16 39 39 H 1.08001 * 119.99995 * 180.02562 * 22 21 20 40 40 H 1.07999 * 120.00650 * 180.02562 * 23 22 21 41 41 H 1.09001 * 113.61833 * 105.37719 * 24 5 2 42 42 H 1.09003 * 113.61284 * 334.47917 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7358 1.6151 6 1 1.6289 -0.2763 2.4297 7 6 2.1345 -2.2743 1.6231 8 6 3.3793 -2.2336 2.5251 9 1 4.1152 -3.0020 2.2885 10 6 3.0524 -2.1636 4.0181 11 7 2.8492 -3.5183 4.5375 12 16 2.8648 -3.7897 6.1710 13 8 2.5950 -5.1733 6.3505 14 8 4.0329 -3.1542 6.6722 15 6 1.4932 -2.9223 6.8571 16 6 0.2049 -3.2747 6.5016 17 6 -0.0267 -4.4012 5.5278 18 8 0.1887 -5.6514 6.1856 19 14 -1.7776 -4.3256 4.8957 20 6 -0.8716 -2.5969 7.0433 21 6 -0.6591 -1.5610 7.9332 22 6 0.6298 -1.2050 8.2846 23 6 1.7058 -1.8853 7.7465 24 6 3.6946 -0.8644 1.8990 25 1 -0.3633 0.5969 0.8365 26 1 -0.3634 0.4259 -0.9351 27 1 -0.3634 -1.0229 0.0987 28 1 2.3173 -2.7227 0.6465 29 1 1.2507 -2.6785 2.1167 30 1 3.8785 -1.6909 4.5492 31 1 2.1443 -1.5785 4.1641 32 1 2.7055 -4.2562 3.9246 33 1 0.6659 -4.3066 4.6914 34 1 -0.4456 -5.8393 6.8908 35 1 -2.0239 -3.0175 4.2375 36 1 -2.0184 -5.4311 3.9338 37 1 -1.8784 -2.8752 6.7690 38 1 -1.4999 -1.0297 8.3543 39 1 0.7958 -0.3958 8.9803 40 1 2.7126 -1.6075 8.0213 41 1 4.0682 -0.1323 2.6149 42 1 4.3050 -0.9265 0.9980 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17836388_2726874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:59:46 Heat of formation + Delta-G solvation = -110.327594 kcal Electronic energy + Delta-G solvation = -29625.242736 eV Core-core repulsion = 25406.760299 eV Total energy + Delta-G solvation = -4218.482437 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.078 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.66560 -40.44020 -38.47648 -38.05128 -37.43834 -37.09208 -36.95277 -35.73687 -32.78006 -32.36069 -30.48362 -28.75774 -26.92983 -26.86652 -25.08943 -24.38989 -22.74735 -20.91593 -20.34566 -19.71728 -19.21450 -18.51561 -18.32573 -18.02010 -17.34729 -17.17161 -16.93891 -16.85376 -16.38665 -16.04652 -15.79400 -15.69394 -15.38211 -15.23809 -14.95879 -14.33633 -14.19377 -14.14472 -13.98853 -13.87953 -13.85103 -13.65740 -13.46689 -13.27453 -13.21676 -13.11844 -13.08811 -12.91784 -12.77505 -12.59476 -12.21002 -12.15200 -12.01829 -11.78651 -11.61079 -11.53223 -10.95741 -10.58866 -10.44979 -10.43604 -10.03154 -5.01087 -0.96221 -0.71003 -0.26267 0.16176 1.21007 1.63865 1.79127 1.89088 1.95055 2.42156 2.59356 2.68157 2.85234 3.22377 3.29353 3.38369 3.42241 3.46540 3.57304 3.59079 3.86246 4.00015 4.03307 4.07900 4.15936 4.20672 4.28264 4.34617 4.37669 4.40651 4.54822 4.59209 4.60318 4.73551 4.82318 4.87509 4.90717 4.92578 4.98373 5.04754 5.19710 5.22080 5.32783 5.78345 5.93594 6.79005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.414 3.586 3 O -0.990 6.990 4 O -0.982 6.982 5 C -0.592 4.592 6 H 0.186 0.814 7 C -0.115 4.115 8 C -0.107 4.107 9 H 0.100 0.900 10 C 0.124 3.876 11 N -1.112 6.112 12 S 2.692 3.308 13 O -0.957 6.957 14 O -0.997 6.997 15 C -0.666 4.666 16 C -0.024 4.024 17 C -0.129 4.129 18 O -0.526 6.526 19 Si 0.781 3.219 20 C -0.136 4.136 21 C -0.053 4.053 22 C -0.138 4.138 23 C -0.040 4.040 24 C -0.112 4.112 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.427 0.573 33 H 0.112 0.888 34 H 0.388 0.612 35 H -0.260 1.260 36 H -0.293 1.293 37 H 0.167 0.833 38 H 0.168 0.832 39 H 0.155 0.845 40 H 0.139 0.861 41 H 0.102 0.898 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 2.474 3.789 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.603 3.397 3 O -0.987 6.987 4 O -0.979 6.979 5 C -0.703 4.703 6 H 0.203 0.797 7 C -0.154 4.154 8 C -0.128 4.128 9 H 0.118 0.882 10 C -0.001 4.001 11 N -0.875 5.875 12 S 2.784 3.216 13 O -0.947 6.947 14 O -0.987 6.987 15 C -0.755 4.755 16 C -0.026 4.026 17 C -0.238 4.238 18 O -0.333 6.333 19 Si 0.683 3.317 20 C -0.154 4.154 21 C -0.071 4.071 22 C -0.157 4.157 23 C -0.060 4.060 24 C -0.151 4.151 25 H 0.171 0.829 26 H 0.149 0.851 27 H 0.169 0.831 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.265 0.735 33 H 0.129 0.871 34 H 0.237 0.763 35 H -0.185 1.185 36 H -0.220 1.220 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.173 0.827 40 H 0.157 0.843 41 H 0.121 0.879 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.751 2.502 2.559 9.455 hybrid contribution -0.060 0.033 0.123 0.141 sum -8.811 2.535 2.682 9.553 Atomic orbital electron populations 1.30113 1.22658 1.13656 1.13115 1.07678 0.79848 0.74165 0.78048 1.93548 1.80955 1.36741 1.87468 1.93553 1.80907 1.67562 1.55864 1.31747 1.07656 1.08904 1.21993 0.79668 1.22986 1.00442 0.89505 1.02431 1.22381 0.98974 0.98555 0.92858 0.88177 1.21352 1.02925 0.81787 0.94071 1.55407 1.89934 1.17079 1.25090 1.01682 0.73695 0.73295 0.72903 1.93694 1.85498 1.30940 1.84527 1.93540 1.47238 1.78287 1.79592 1.30502 1.15360 1.14387 1.15225 1.20150 0.92150 0.94880 0.95446 1.25881 1.16442 0.84208 0.97250 1.86840 1.58879 1.33334 1.54212 0.93423 0.76041 0.78296 0.83979 1.21475 0.98695 0.96907 0.98350 1.21922 0.98128 0.94068 0.92963 1.21702 0.92535 1.00838 1.00613 1.21207 1.01266 0.91374 0.92119 1.22748 0.91007 0.98550 1.02820 0.82914 0.85145 0.83080 0.87507 0.87250 0.89791 0.89081 0.73539 0.87066 0.76338 1.18493 1.22020 0.81657 0.81474 0.82742 0.84301 0.87897 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.47 10.62 113.37 1.20 7.68 16 2 S 2.41 -5.67 5.34 -56.49 -0.30 -5.98 16 3 O -0.99 -7.06 18.10 -127.37 -2.30 -9.36 16 4 O -0.98 -5.83 17.21 -127.37 -2.19 -8.02 16 5 C -0.59 5.15 3.82 31.18 0.12 5.27 16 6 H 0.19 -2.88 7.70 -2.39 -0.02 -2.90 16 7 C -0.12 1.04 7.18 31.18 0.22 1.27 16 8 C -0.11 0.74 3.97 -10.25 -0.04 0.70 16 9 H 0.10 -0.65 8.14 -2.39 -0.02 -0.67 16 10 C 0.12 -0.76 5.90 86.38 0.51 -0.25 16 11 N -1.11 3.27 4.70 -187.49 -0.88 2.39 16 12 S 2.69 12.11 4.99 -56.49 -0.28 11.83 16 13 O -0.96 -10.47 15.03 -119.17 -1.79 -12.26 16 14 O -1.00 -10.58 16.46 -128.00 -2.11 -12.69 16 15 C -0.67 -0.34 5.87 22.27 0.13 -0.21 16 16 C -0.02 0.08 5.27 -19.87 -0.10 -0.03 16 17 C -0.13 0.42 1.88 71.23 0.13 0.55 16 18 O -0.53 -0.58 10.59 -127.46 -1.35 -1.93 16 19 Si 0.78 -6.11 29.85 68.60 2.05 -4.06 16 20 C -0.14 1.10 8.66 22.27 0.19 1.30 16 21 C -0.05 0.47 10.05 22.27 0.22 0.69 16 22 C -0.14 0.79 10.05 22.27 0.22 1.01 16 23 C -0.04 0.03 9.55 22.27 0.21 0.25 16 24 C -0.11 0.64 7.26 31.13 0.23 0.87 16 25 H 0.15 -2.24 8.14 -2.39 -0.02 -2.26 16 26 H 0.13 -1.19 8.14 -2.39 -0.02 -1.21 16 27 H 0.15 -2.15 8.14 -2.39 -0.02 -2.17 16 28 H 0.11 -0.80 7.38 -2.39 -0.02 -0.82 16 29 H 0.11 -1.47 8.10 -2.39 -0.02 -1.49 16 30 H 0.08 -0.38 7.75 -2.39 -0.02 -0.40 16 31 H 0.09 -0.97 7.38 -2.39 -0.02 -0.99 16 32 H 0.43 -2.53 8.33 -96.75 -0.81 -3.33 16 33 H 0.11 -0.46 5.79 -2.38 -0.01 -0.47 16 34 H 0.39 -2.78 8.60 -74.06 -0.64 -3.42 16 35 H -0.26 1.70 7.11 99.48 0.71 2.40 16 36 H -0.29 0.00 7.11 99.48 0.71 0.71 16 37 H 0.17 -2.41 5.16 -2.91 -0.02 -2.43 16 38 H 0.17 -2.51 8.06 -2.91 -0.02 -2.54 16 39 H 0.15 -1.53 8.06 -2.91 -0.02 -1.56 16 40 H 0.14 -0.06 7.34 -2.91 -0.02 -0.08 16 41 H 0.10 -0.76 8.10 -2.39 -0.02 -0.78 16 42 H 0.09 -0.38 8.10 -2.39 -0.02 -0.40 16 Total: 0.00 -39.55 364.95 -6.24 -45.79 By element: Atomic # 1 Polarization: -24.48 SS G_CDS: -0.33 Total: -24.81 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 3.25 Total: 19.10 kcal Atomic # 7 Polarization: 3.27 SS G_CDS: -0.88 Total: 2.39 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -9.74 Total: -44.26 kcal Atomic # 14 Polarization: -6.11 SS G_CDS: 2.05 Total: -4.06 kcal Atomic # 16 Polarization: 6.43 SS G_CDS: -0.58 Total: 5.85 kcal Total: -39.55 -6.24 -45.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17836388_2726874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.539 kcal (2) G-P(sol) polarization free energy of solvation -39.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds