Wall clock time and date at job start Mon Mar 8 2021 11:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42891 * 1 3 3 Si 1.86300 * 109.47601 * 2 1 4 4 C 1.50699 * 109.47001 * 119.99910 * 2 1 3 5 5 C 1.33392 * 125.20292 * 38.78882 * 4 2 1 6 6 S 1.76205 * 122.53881 * 0.02562 * 5 4 2 7 7 O 1.42097 * 106.39957 * 52.31591 * 6 5 4 8 8 O 1.42098 * 106.40064 * 279.39828 * 6 5 4 9 9 N 1.65601 * 107.21728 * 165.85685 * 6 5 4 10 10 C 1.46498 * 120.00064 * 68.32371 * 9 6 5 11 11 C 1.53001 * 109.46948 * 163.28671 * 10 9 6 12 12 C 1.52996 * 109.46892 * 179.97438 * 11 10 9 13 13 H 1.09002 * 112.85261 * 43.80997 * 12 11 10 14 14 C 1.53786 * 113.61325 * 175.00365 * 12 11 10 15 15 C 1.53782 * 87.08390 * 140.06672 * 14 12 11 16 16 H 1.09005 * 113.61081 * 89.10918 * 15 14 12 17 17 O 1.42893 * 113.61706 * 220.02109 * 15 14 12 18 18 C 1.53783 * 113.69498 * 272.53890 * 12 11 10 19 19 C 1.38422 * 114.92133 * 179.75933 * 5 4 2 20 20 C 1.33387 * 114.92588 * 0.24182 * 19 5 4 21 21 S 1.75883 * 109.58973 * 0.02562 * 20 19 5 22 22 H 0.96706 * 113.99950 * 64.95551 * 1 2 3 23 23 H 1.09007 * 109.47505 * 239.99658 * 2 1 3 24 24 H 1.48501 * 109.99797 * 59.99659 * 3 2 1 25 25 H 1.48498 * 110.00002 * 181.31686 * 3 2 1 26 26 H 0.97000 * 119.99539 * 248.32268 * 9 6 5 27 27 H 1.08998 * 109.46920 * 43.28991 * 10 9 6 28 28 H 1.08995 * 109.47167 * 283.29069 * 10 9 6 29 29 H 1.08998 * 109.47049 * 60.00398 * 11 10 9 30 30 H 1.08995 * 109.47511 * 300.00187 * 11 10 9 31 31 H 1.09005 * 113.61151 * 254.61651 * 14 12 11 32 32 H 1.08995 * 113.61574 * 25.51630 * 14 12 11 33 33 H 0.96695 * 114.00008 * 180.02562 * 17 15 14 34 34 H 1.09007 * 113.60853 * 334.55691 * 18 12 11 35 35 H 1.08996 * 113.61494 * 105.46041 * 18 12 11 36 36 H 1.08008 * 122.54014 * 180.26750 * 19 5 4 37 37 H 1.07996 * 125.20657 * 180.02562 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.3865 -1.8058 1.7622 6 16 -0.0340 -2.5881 1.0730 7 8 0.2551 -2.8062 -0.3011 8 8 -1.1588 -1.8450 1.5221 9 7 -0.1548 -4.0859 1.7689 10 6 -0.4902 -4.2086 3.1897 11 6 -0.9440 -5.6397 3.4848 12 6 -1.2938 -5.7680 4.9687 13 1 -1.8782 -4.9262 5.3402 14 6 -1.8787 -7.1389 5.3474 15 6 -1.0389 -7.0543 6.6329 16 1 -1.5537 -6.5641 7.4592 17 8 -0.4406 -8.2964 7.0086 18 6 -0.0910 -6.1232 5.8586 19 6 2.0252 -2.2847 2.8931 20 6 3.0855 -1.5754 3.2827 21 16 3.3229 -0.2198 2.1876 22 1 -0.3933 0.3740 -0.8004 23 1 1.7923 -0.5139 -0.8900 24 1 1.5615 2.4679 1.2085 25 1 3.5346 1.7701 -0.0321 26 1 -0.0034 -4.8820 1.2357 27 1 -1.2944 -3.5147 3.4343 28 1 0.3876 -3.9743 3.7918 29 1 -0.1398 -6.3336 3.2401 30 1 -1.8218 -5.8740 2.8826 31 1 -2.9538 -7.1205 5.5262 32 1 -1.5736 -7.9437 4.6786 33 1 0.0885 -8.2496 7.8165 34 1 0.7030 -6.6504 5.3295 35 1 0.2772 -5.2850 6.4501 36 1 1.6905 -3.1663 3.4198 37 1 3.7036 -1.7993 4.1395 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17837620_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:08:58 Heat of formation + Delta-G solvation = -87.239715 kcal Electronic energy + Delta-G solvation = -23210.123242 eV Core-core repulsion = 19595.087923 eV Total energy + Delta-G solvation = -3615.035320 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.53787 -39.54950 -38.04360 -37.70601 -37.13316 -36.51922 -35.73304 -32.00999 -31.05190 -27.53337 -26.81805 -25.48797 -24.41541 -22.72132 -21.70006 -20.74195 -20.05563 -18.95266 -18.61080 -18.47568 -17.92424 -17.69336 -17.25682 -16.59989 -16.19487 -15.98876 -15.65557 -15.46791 -15.26434 -15.07225 -14.44055 -14.32932 -14.17078 -13.87027 -13.59334 -13.48994 -13.14017 -12.95780 -12.88523 -12.81429 -12.66369 -12.55372 -12.41957 -12.11023 -12.00009 -11.74348 -11.68847 -11.28191 -10.86437 -10.77838 -10.57461 -10.10122 -9.80027 -5.31727 -0.55688 -0.50997 0.29951 0.63391 0.97783 1.14969 1.45696 1.78464 2.07735 2.86144 3.01687 3.15325 3.39461 3.46508 3.49628 3.63548 3.73456 3.85920 3.88933 3.94066 3.97549 4.13604 4.20279 4.30697 4.40583 4.45881 4.60859 4.68243 4.72602 4.73829 4.79525 4.85017 4.95713 5.04194 5.09737 5.16750 5.36904 5.90673 6.37981 6.65906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.079 4.079 3 Si 0.695 3.305 4 C -0.056 4.056 5 C -0.658 4.658 6 S 2.724 3.276 7 O -0.953 6.953 8 O -0.934 6.934 9 N -1.123 6.123 10 C 0.110 3.890 11 C -0.115 4.115 12 C -0.111 4.111 13 H 0.098 0.902 14 C -0.125 4.125 15 C 0.073 3.927 16 H 0.082 0.918 17 O -0.561 6.561 18 C -0.168 4.168 19 C -0.091 4.091 20 C -0.208 4.208 21 S 0.140 5.860 22 H 0.401 0.599 23 H 0.109 0.891 24 H -0.235 1.235 25 H -0.235 1.235 26 H 0.420 0.580 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.379 0.621 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.157 0.843 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 0.600 1.044 2.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.190 4.190 3 Si 0.592 3.408 4 C -0.176 4.176 5 C -0.756 4.756 6 S 2.808 3.192 7 O -0.943 6.943 8 O -0.924 6.924 9 N -0.884 5.884 10 C -0.016 4.016 11 C -0.154 4.154 12 C -0.130 4.130 13 H 0.117 0.883 14 C -0.162 4.162 15 C 0.014 3.986 16 H 0.100 0.900 17 O -0.366 6.366 18 C -0.206 4.206 19 C -0.119 4.119 20 C -0.343 4.343 21 S 0.403 5.597 22 H 0.252 0.748 23 H 0.126 0.874 24 H -0.159 1.159 25 H -0.159 1.159 26 H 0.254 0.746 27 H 0.104 0.896 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.226 0.774 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.174 0.826 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.830 2.462 0.979 3.877 hybrid contribution 0.158 -1.838 1.076 2.136 sum 2.988 0.623 2.055 3.679 Atomic orbital electron populations 1.86390 1.15783 1.86666 1.46533 1.24622 0.86981 1.11752 0.95674 0.94347 0.81352 0.76825 0.88267 1.23622 0.98741 0.96188 0.99037 1.29973 1.25625 1.09961 1.09997 1.01370 0.73369 0.71700 0.72750 1.93564 1.85507 1.84973 1.30297 1.93592 1.46855 1.69915 1.82007 1.55697 1.87266 1.25523 1.19936 1.21531 1.00679 0.99511 0.79863 1.21738 1.02420 0.95328 0.95872 1.22313 0.98053 0.98109 0.94497 0.88332 1.23122 0.99672 0.97238 0.96180 1.23349 0.94628 0.84748 0.95837 0.90017 1.86536 1.69570 1.32550 1.47986 1.23813 0.97663 0.99955 0.99143 1.19960 0.95431 1.01447 0.95100 1.25905 1.03585 0.99868 1.04977 1.84467 1.27025 1.28257 1.19934 0.74844 0.87382 1.15858 1.15871 0.74582 0.89568 0.91658 0.90686 0.90295 0.90598 0.88984 0.77406 0.89075 0.91164 0.82562 0.80599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.00 9.47 -60.23 -0.57 -1.57 16 2 C -0.08 -0.09 2.37 36.01 0.09 -0.01 16 3 Si 0.70 -0.59 31.27 -169.99 -5.32 -5.90 16 4 C -0.06 -0.18 5.78 -36.00 -0.21 -0.39 16 5 C -0.66 -2.05 5.71 -41.21 -0.24 -2.29 16 6 S 2.72 9.28 4.22 -107.50 -0.45 8.83 16 7 O -0.95 -5.11 17.10 -62.24 -1.06 -6.17 16 8 O -0.93 -5.93 16.21 -65.06 -1.05 -6.98 16 9 N -1.12 0.26 5.71 -10.62 -0.06 0.20 16 10 C 0.11 -0.15 5.72 -4.04 -0.02 -0.18 16 11 C -0.11 0.26 5.20 -26.73 -0.14 0.12 16 12 C -0.11 0.24 3.65 -89.81 -0.33 -0.09 16 13 H 0.10 -0.26 8.13 -51.93 -0.42 -0.69 16 14 C -0.12 0.13 7.47 -25.92 -0.19 -0.07 16 15 C 0.07 -0.08 5.21 -25.92 -0.14 -0.21 16 16 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 17 O -0.56 -0.27 13.67 -35.23 -0.48 -0.75 16 18 C -0.17 0.35 7.47 -25.92 -0.19 0.15 16 19 C -0.09 -0.09 9.52 -41.21 -0.39 -0.48 16 20 C -0.21 -0.10 11.23 29.04 0.33 0.22 16 21 S 0.14 0.25 20.87 -107.50 -2.24 -1.99 16 22 H 0.40 -1.43 8.86 45.56 0.40 -1.02 16 23 H 0.11 -0.05 7.96 -51.93 -0.41 -0.46 16 24 H -0.24 -0.51 7.11 56.52 0.40 -0.11 16 25 H -0.23 -0.09 7.11 56.52 0.40 0.31 16 26 H 0.42 -0.87 8.67 -34.47 -0.30 -1.17 16 27 H 0.09 -0.06 7.64 -51.93 -0.40 -0.46 16 28 H 0.07 -0.19 5.37 -51.93 -0.28 -0.47 16 29 H 0.07 -0.20 7.85 -51.93 -0.41 -0.61 16 30 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 31 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 32 H 0.09 -0.02 8.10 -51.93 -0.42 -0.44 16 33 H 0.38 -1.32 9.12 45.56 0.42 -0.91 16 34 H 0.09 -0.14 7.90 -51.92 -0.41 -0.55 16 35 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 36 H 0.16 -0.28 4.83 -52.48 -0.25 -0.53 16 37 H 0.18 -0.42 8.06 -52.49 -0.42 -0.84 16 LS Contribution 327.11 15.07 4.93 4.93 Total: 0.00 -11.35 327.11 -11.55 -22.90 By element: Atomic # 1 Polarization: -6.48 SS G_CDS: -3.79 Total: -10.28 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.44 Total: -3.21 kcal Atomic # 7 Polarization: 0.26 SS G_CDS: -0.06 Total: 0.20 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -3.17 Total: -15.47 kcal Atomic # 14 Polarization: -0.59 SS G_CDS: -5.32 Total: -5.90 kcal Atomic # 16 Polarization: 9.53 SS G_CDS: -2.70 Total: 6.83 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -11.35 -11.55 -22.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17837620_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.341 kcal (2) G-P(sol) polarization free energy of solvation -11.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds