Wall clock time and date at job start Mon Mar 8 2021 11:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86290 * 109.47473 * 2 1 4 4 C 1.50701 * 109.46848 * 120.00056 * 2 1 3 5 5 C 1.33396 * 125.20611 * 64.99545 * 4 2 1 6 6 C 1.38419 * 114.92335 * 179.97438 * 5 4 2 7 7 S 1.76198 * 122.54116 * 179.97438 * 6 5 4 8 8 O 1.42106 * 106.40224 * 336.46080 * 7 6 5 9 9 O 1.42102 * 106.40421 * 203.54090 * 7 6 5 10 10 N 1.65596 * 107.21921 * 90.00241 * 7 6 5 11 11 C 1.46496 * 120.00473 * 64.99808 * 10 7 6 12 12 C 1.52999 * 109.47246 * 165.00183 * 11 10 7 13 13 C 1.53006 * 109.46811 * 180.02562 * 12 11 10 14 14 H 1.08989 * 112.84969 * 316.19674 * 13 12 11 15 15 C 1.53784 * 113.61171 * 87.50542 * 13 12 11 16 16 C 1.53779 * 87.07962 * 139.97968 * 15 13 12 17 17 H 1.08999 * 113.69285 * 89.12126 * 16 15 13 18 18 O 1.42900 * 113.61321 * 220.01775 * 16 15 13 19 19 C 1.53779 * 87.08153 * 334.56390 * 16 15 13 20 20 C 1.33391 * 114.91957 * 0.25210 * 6 5 4 21 21 S 1.75883 * 109.59521 * 359.63141 * 20 6 5 22 22 H 0.96700 * 114.00597 * 300.00237 * 1 2 3 23 23 H 1.09002 * 109.47303 * 239.99095 * 2 1 3 24 24 H 1.48506 * 110.00087 * 299.99881 * 3 2 1 25 25 H 1.48501 * 110.00028 * 61.31784 * 3 2 1 26 26 H 1.08006 * 122.53331 * 359.97438 * 5 4 2 27 27 H 0.97004 * 119.99988 * 245.00307 * 10 7 6 28 28 H 1.09009 * 109.46918 * 45.00174 * 11 10 7 29 29 H 1.09001 * 109.47282 * 285.00543 * 11 10 7 30 30 H 1.08992 * 109.47188 * 60.00457 * 12 11 10 31 31 H 1.08997 * 109.46828 * 300.00176 * 12 11 10 32 32 H 1.09005 * 113.60951 * 254.52327 * 15 13 12 33 33 H 1.08996 * 113.61961 * 25.42950 * 15 13 12 34 34 H 0.96701 * 113.99914 * 277.49153 * 18 16 15 35 35 H 1.08999 * 113.61946 * 270.88503 * 19 16 15 36 36 H 1.09005 * 113.61625 * 139.98462 * 19 16 15 37 37 H 1.07997 * 125.20226 * 179.75748 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7563 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 1.7532 -2.0052 1.4975 6 6 2.3060 -2.4361 2.6911 7 16 2.1897 -4.1059 3.2413 8 8 1.0534 -4.6631 2.5950 9 8 2.3430 -4.0746 4.6537 10 7 3.5083 -4.9113 2.6457 11 6 4.8542 -4.5457 3.0941 12 6 5.8393 -5.6492 2.7035 13 6 7.2448 -5.2676 3.1724 14 1 7.4900 -4.2251 2.9700 15 6 7.5537 -5.7065 4.6136 16 6 8.9600 -6.0787 4.1152 17 1 9.6759 -5.2587 4.1714 18 8 9.4627 -7.2936 4.6751 19 6 8.3339 -6.2554 2.7218 20 6 2.9285 -1.4901 3.3960 21 16 2.8425 0.0406 2.5340 22 1 -0.3934 0.4417 0.7650 23 1 1.7923 -0.5140 -0.8899 24 1 1.5616 2.4678 -1.2085 25 1 1.5879 2.4585 1.2242 26 1 1.2181 -2.6672 0.8326 27 1 3.3896 -5.6252 1.9998 28 1 4.8557 -4.4240 4.1774 29 1 5.1523 -3.6090 2.6229 30 1 5.8378 -5.7709 1.6204 31 1 5.5412 -6.5858 3.1747 32 1 7.5477 -4.8855 5.3307 33 1 6.9667 -6.5632 4.9445 34 1 9.8579 -7.1889 5.5514 35 1 7.9602 -7.2622 2.5355 36 1 8.9578 -5.8778 1.9117 37 1 3.4132 -1.6414 4.3492 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17837620_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:09:02 Heat of formation + Delta-G solvation = -96.444245 kcal Electronic energy + Delta-G solvation = -22471.251002 eV Core-core repulsion = 18855.816544 eV Total energy + Delta-G solvation = -3615.434458 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 320.063 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53634 -39.56700 -38.26608 -37.70751 -37.22556 -36.85667 -35.74767 -31.91285 -31.10678 -27.28050 -26.81204 -25.46032 -24.97150 -22.79332 -21.49555 -20.69782 -20.14893 -19.24281 -18.67891 -18.26600 -17.99063 -17.71194 -17.23208 -16.49698 -16.44678 -16.14288 -15.71859 -15.51841 -15.47708 -14.97709 -14.52139 -14.29109 -14.22077 -13.87580 -13.61354 -13.48420 -13.26520 -13.17424 -13.05347 -12.93608 -12.89739 -12.51386 -12.49660 -12.35763 -12.06475 -11.71125 -11.61031 -11.29863 -10.88800 -10.76896 -10.64601 -10.30563 -9.91593 -5.21615 -0.77366 -0.53568 0.25896 0.51840 0.92825 1.09982 1.40788 1.77485 2.01575 2.70847 3.12280 3.15153 3.29416 3.38801 3.50048 3.56045 3.67732 3.75662 3.85463 3.88465 4.02418 4.13465 4.20706 4.34206 4.36874 4.44679 4.56859 4.63837 4.73178 4.73970 4.82540 4.84513 4.93309 5.01224 5.04557 5.14563 5.36359 5.82213 6.19755 6.67095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.034 4.034 3 Si 0.651 3.349 4 C -0.227 4.227 5 C -0.042 4.042 6 C -0.686 4.686 7 S 2.710 3.290 8 O -0.951 6.951 9 O -0.953 6.953 10 N -1.115 6.115 11 C 0.115 3.885 12 C -0.114 4.114 13 C -0.109 4.109 14 H 0.097 0.903 15 C -0.168 4.168 16 C 0.073 3.927 17 H 0.082 0.918 18 O -0.561 6.561 19 C -0.125 4.125 20 C -0.087 4.087 21 S 0.159 5.841 22 H 0.379 0.621 23 H 0.130 0.870 24 H -0.233 1.233 25 H -0.239 1.239 26 H 0.157 0.843 27 H 0.421 0.579 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.379 0.621 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 3.099 -0.616 7.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.328 6.328 2 C -0.146 4.146 3 Si 0.549 3.451 4 C -0.345 4.345 5 C -0.070 4.070 6 C -0.785 4.785 7 S 2.796 3.204 8 O -0.941 6.941 9 O -0.943 6.943 10 N -0.876 5.876 11 C -0.011 4.011 12 C -0.153 4.153 13 C -0.128 4.128 14 H 0.115 0.885 15 C -0.206 4.206 16 C 0.014 3.986 17 H 0.099 0.901 18 O -0.367 6.367 19 C -0.162 4.162 20 C -0.226 4.226 21 S 0.423 5.577 22 H 0.227 0.773 23 H 0.147 0.853 24 H -0.156 1.156 25 H -0.163 1.163 26 H 0.175 0.825 27 H 0.256 0.744 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.227 0.773 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.901 4.712 -0.821 7.596 hybrid contribution -1.045 -0.956 0.197 1.430 sum 4.856 3.756 -0.624 6.171 Atomic orbital electron populations 1.86650 1.16984 1.79877 1.49258 1.24421 0.84022 1.10164 0.96031 0.95317 0.91646 0.74899 0.83200 1.25021 1.08842 0.98279 1.02342 1.19625 0.97548 0.95194 0.94672 1.30062 1.15441 1.26064 1.06960 1.01588 0.72365 0.72771 0.73684 1.93621 1.47209 1.76671 1.76634 1.93608 1.85895 1.86552 1.28216 1.55520 1.20627 1.50227 1.61252 1.21382 0.80841 0.98524 1.00379 1.21726 0.92981 0.98482 1.02147 1.22289 0.94109 0.99809 0.96625 0.88490 1.23814 0.98090 1.02026 0.96623 1.23349 0.93094 0.87105 0.95032 0.90067 1.86536 1.80489 1.32324 1.37323 1.23121 0.96799 1.00545 0.95762 1.25933 0.98506 0.95821 1.02350 1.84434 1.50331 1.10742 1.12241 0.77333 0.85266 1.15564 1.16325 0.82524 0.74384 0.89995 0.91546 0.90591 0.90512 0.91065 0.88962 0.77345 0.88995 0.90691 0.79704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 -0.40 12.88 -35.23 -0.45 -0.86 16 2 C -0.03 0.03 2.96 36.01 0.11 0.14 16 3 Si 0.65 -1.10 30.98 -169.99 -5.27 -6.37 16 4 C -0.23 0.10 5.70 -36.00 -0.21 -0.10 16 5 C -0.04 -0.02 9.59 -41.21 -0.40 -0.41 16 6 C -0.69 -0.06 5.86 -41.21 -0.24 -0.30 16 7 S 2.71 2.75 5.80 -107.50 -0.62 2.12 16 8 O -0.95 -4.12 17.63 -57.17 -1.01 -5.12 16 9 O -0.95 -3.47 17.11 -57.17 -0.98 -4.45 16 10 N -1.12 2.26 6.00 -10.61 -0.06 2.19 16 11 C 0.11 -0.35 6.21 -4.04 -0.03 -0.37 16 12 C -0.11 0.37 5.19 -26.73 -0.14 0.24 16 13 C -0.11 0.34 3.65 -89.80 -0.33 0.01 16 14 H 0.10 -0.40 8.13 -51.94 -0.42 -0.83 16 15 C -0.17 0.36 7.46 -25.92 -0.19 0.17 16 16 C 0.07 -0.10 5.21 -25.92 -0.14 -0.24 16 17 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 18 O -0.56 -0.17 13.67 -35.23 -0.48 -0.66 16 19 C -0.12 0.21 7.47 -25.92 -0.19 0.02 16 20 C -0.09 0.10 10.70 29.04 0.31 0.41 16 21 S 0.16 -0.25 20.60 -107.50 -2.21 -2.46 16 22 H 0.38 -0.75 8.70 45.56 0.40 -0.36 16 23 H 0.13 -0.27 7.96 -51.93 -0.41 -0.68 16 24 H -0.23 -0.26 7.11 56.52 0.40 0.14 16 25 H -0.24 -0.01 7.11 56.52 0.40 0.39 16 26 H 0.16 0.07 7.97 -52.48 -0.42 -0.35 16 27 H 0.42 -1.46 8.65 -34.47 -0.30 -1.76 16 28 H 0.08 -0.22 7.75 -51.92 -0.40 -0.62 16 29 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 30 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 31 H 0.08 -0.20 7.84 -51.93 -0.41 -0.61 16 32 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 33 H 0.09 -0.10 7.89 -51.93 -0.41 -0.51 16 34 H 0.38 -1.37 9.12 45.56 0.42 -0.95 16 35 H 0.09 -0.06 8.10 -51.93 -0.42 -0.48 16 36 H 0.07 -0.16 8.14 -51.93 -0.42 -0.59 16 37 H 0.19 -0.60 8.00 -52.49 -0.42 -1.02 16 LS Contribution 339.71 15.07 5.12 5.12 Total: 0.00 -10.34 339.71 -11.52 -21.86 By element: Atomic # 1 Polarization: -6.82 SS G_CDS: -4.11 Total: -10.93 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.44 Total: -0.45 kcal Atomic # 7 Polarization: 2.26 SS G_CDS: -0.06 Total: 2.19 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -2.92 Total: -11.09 kcal Atomic # 14 Polarization: -1.10 SS G_CDS: -5.27 Total: -6.37 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.84 Total: -0.34 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -10.34 -11.52 -21.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17837620_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.584 kcal (2) G-P(sol) polarization free energy of solvation -10.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds