Wall clock time and date at job start Mon Mar 8 2021 11:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33386 * 125.20004 * 2 1 4 4 C 1.50702 * 122.54143 * 0.02562 * 3 2 1 5 5 O 1.42895 * 109.47207 * 311.38947 * 4 3 2 6 6 Si 1.86307 * 109.46721 * 71.38933 * 4 3 2 7 7 C 1.38429 * 114.91934 * 179.75986 * 3 2 1 8 8 S 1.76199 * 122.53837 * 180.26983 * 7 3 2 9 9 O 1.42097 * 106.40247 * 30.26214 * 8 7 3 10 10 O 1.42095 * 106.39954 * 163.17967 * 8 7 3 11 11 N 1.65600 * 107.21872 * 276.72017 * 8 7 3 12 12 C 1.46507 * 119.99890 * 65.00118 * 11 8 7 13 13 C 1.52996 * 109.47074 * 165.00049 * 12 11 8 14 14 C 1.52994 * 109.47129 * 180.02562 * 13 12 11 15 15 H 1.09003 * 112.85251 * 314.66459 * 14 13 12 16 16 C 1.53780 * 113.61790 * 85.86223 * 14 13 12 17 17 C 1.53955 * 87.02151 * 139.95110 * 16 14 13 18 18 H 1.09008 * 113.53684 * 89.19063 * 17 16 14 19 19 O 1.42898 * 113.74506 * 220.05659 * 17 16 14 20 20 C 1.53772 * 87.11060 * 334.63766 * 17 16 14 21 21 C 1.33386 * 114.91964 * 0.24742 * 7 3 2 22 22 C 1.50703 * 125.20320 * 179.97438 * 21 7 3 23 23 S 1.75880 * 125.20568 * 180.14212 * 2 1 3 24 24 H 1.09007 * 109.47158 * 89.55871 * 1 2 3 25 25 H 1.09004 * 109.46891 * 209.55520 * 1 2 3 26 26 H 1.09001 * 109.47333 * 329.55628 * 1 2 3 27 27 H 1.09004 * 109.46951 * 191.38687 * 4 3 2 28 28 H 0.96705 * 114.00145 * 67.44130 * 5 4 3 29 29 H 1.48499 * 109.99697 * 184.73176 * 6 4 3 30 30 H 1.48495 * 109.99785 * 306.05184 * 6 4 3 31 31 H 0.96995 * 119.99999 * 245.00146 * 11 8 7 32 32 H 1.08998 * 109.47091 * 285.00305 * 12 11 8 33 33 H 1.09004 * 109.47008 * 45.00195 * 12 11 8 34 34 H 1.09000 * 109.46866 * 299.99941 * 13 12 11 35 35 H 1.09002 * 109.47332 * 59.99709 * 13 12 11 36 36 H 1.08996 * 113.61697 * 254.53241 * 16 14 13 37 37 H 1.09001 * 113.61492 * 25.43381 * 16 14 13 38 38 H 0.96699 * 114.00313 * 277.60237 * 19 17 16 39 39 H 1.08999 * 113.61798 * 270.81059 * 20 17 16 40 40 H 1.09000 * 113.61474 * 139.90839 * 20 17 16 41 41 H 1.09007 * 109.46967 * 83.07638 * 22 21 7 42 42 H 1.08997 * 109.47179 * 203.08204 * 22 21 7 43 43 H 1.08998 * 109.46510 * 323.08099 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4847 0.0006 5 8 0.6999 2.5884 -1.0098 6 14 0.9517 2.8465 1.6656 7 6 3.6380 0.8429 0.0053 8 16 4.8356 2.1353 0.0132 9 8 4.2417 3.2284 0.7001 10 8 6.0636 1.5419 0.4116 11 7 5.0397 2.6242 -1.5557 12 6 3.9306 3.2537 -2.2770 13 6 4.4646 3.9374 -3.5372 14 6 3.3066 4.5953 -4.2901 15 1 2.4341 3.9474 -4.3745 16 6 2.9755 6.0128 -3.7942 17 6 2.7708 6.3950 -5.2715 18 1 1.7509 6.2402 -5.6238 19 8 3.2844 7.6851 -5.6086 20 6 3.7252 5.2412 -5.6215 21 6 3.9751 -0.4476 0.0043 22 6 5.3861 -0.9770 0.0087 23 16 2.5210 -1.4371 -0.0036 24 1 -0.3634 0.0079 -1.0277 25 1 -0.3633 -0.8940 0.5069 26 1 -0.3634 0.8860 0.5207 27 1 2.4998 3.2026 -0.2024 28 1 -0.0912 2.0610 -0.8332 29 1 0.2854 4.1735 1.6440 30 1 -0.0308 1.7906 2.0188 31 1 5.8934 2.4938 -1.9972 32 1 3.2015 2.4935 -2.5573 33 1 3.4542 3.9951 -1.6355 34 1 5.1937 4.6976 -3.2568 35 1 4.9411 3.1961 -4.1787 36 1 2.0644 6.0653 -3.1983 37 1 3.8190 6.5194 -3.3251 38 1 2.6887 8.4150 -5.3908 39 1 4.7740 5.5363 -5.6529 40 1 3.4183 4.6715 -6.4986 41 1 5.7660 -0.9904 1.0304 42 1 5.3957 -1.9890 -0.3959 43 1 6.0171 -0.3342 -0.6051 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17837620_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:09:05 Heat of formation + Delta-G solvation = -94.427149 kcal Electronic energy + Delta-G solvation = -28029.264755 eV Core-core repulsion = 24102.842526 eV Total energy + Delta-G solvation = -3926.422228 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.094 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52594 -40.38116 -38.49647 -37.34506 -37.18289 -36.88346 -35.69474 -34.13826 -31.14419 -31.04191 -28.08888 -26.73796 -26.01401 -25.35896 -23.21920 -22.71858 -20.96257 -20.54519 -20.05768 -19.08383 -18.52982 -18.21601 -18.09759 -17.28795 -17.12546 -16.42435 -16.30270 -15.85331 -15.74958 -15.55476 -15.39943 -15.33271 -14.72321 -14.53577 -14.41827 -14.23113 -14.05268 -13.65859 -13.50882 -13.46738 -13.40777 -13.22945 -13.15443 -13.03952 -12.88032 -12.72239 -12.58959 -12.43350 -12.28695 -11.97160 -11.69005 -11.60939 -11.33789 -11.22066 -10.89309 -10.69589 -10.59721 -10.01491 -9.40018 -4.84964 -0.73641 -0.43178 0.36068 0.69575 0.81085 1.36679 1.58062 1.93336 2.06140 2.68168 3.17226 3.25798 3.28995 3.44290 3.46709 3.58989 3.65957 3.75509 3.91655 3.92340 3.94395 3.97570 4.11782 4.16129 4.26224 4.28680 4.40428 4.48540 4.52639 4.56236 4.56475 4.68680 4.71408 4.80042 4.82504 4.89631 4.92769 5.01666 5.05109 5.12660 5.18478 5.22755 5.44723 5.85395 6.27463 6.72357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.194 4.194 3 C -0.059 4.059 4 C -0.085 4.085 5 O -0.525 6.525 6 Si 0.689 3.311 7 C -0.686 4.686 8 S 2.706 3.294 9 O -0.946 6.946 10 O -0.951 6.951 11 N -1.116 6.116 12 C 0.114 3.886 13 C -0.113 4.113 14 C -0.108 4.108 15 H 0.097 0.903 16 C -0.168 4.168 17 C 0.074 3.926 18 H 0.081 0.919 19 O -0.561 6.561 20 C -0.125 4.125 21 C -0.044 4.044 22 C -0.111 4.111 23 S 0.160 5.840 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.139 0.861 28 H 0.369 0.631 29 H -0.243 1.243 30 H -0.245 1.245 31 H 0.420 0.580 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.379 0.621 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 -2.609 -1.395 3.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.311 4.311 3 C -0.070 4.070 4 C -0.196 4.196 5 O -0.333 6.333 6 Si 0.587 3.413 7 C -0.785 4.785 8 S 2.793 3.207 9 O -0.936 6.936 10 O -0.941 6.941 11 N -0.877 5.877 12 C -0.012 4.012 13 C -0.152 4.152 14 C -0.127 4.127 15 H 0.116 0.884 16 C -0.205 4.205 17 C 0.015 3.985 18 H 0.099 0.901 19 O -0.367 6.367 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.169 4.169 23 S 0.426 5.574 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.156 0.844 28 H 0.218 0.782 29 H -0.167 1.167 30 H -0.170 1.170 31 H 0.255 0.745 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.226 0.774 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.098 0.902 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.736 -3.641 -0.606 4.079 hybrid contribution -1.124 0.542 -1.076 1.647 sum -2.859 -3.100 -1.683 4.540 Atomic orbital electron populations 1.20689 0.87821 1.03951 1.03447 1.24179 0.99953 0.95290 1.11709 1.18504 0.90587 0.96651 1.01222 1.25291 0.95600 0.94484 1.04216 1.86639 1.29274 1.71863 1.45542 0.93600 0.84167 0.80940 0.82560 1.29460 1.11586 1.13497 1.23935 1.01596 0.73084 0.73457 0.72515 1.93519 1.78173 1.51022 1.70883 1.93609 1.42094 1.78106 1.80314 1.55524 1.22018 1.76107 1.34063 1.21497 0.87908 0.97187 0.94572 1.21714 0.97985 1.00297 0.95202 1.22272 0.98706 0.95776 0.95966 0.88434 1.23827 1.02871 0.96348 0.97481 1.23374 0.97133 0.83375 0.94649 0.90135 1.86527 1.48072 1.15825 1.86250 1.23116 1.00734 0.95061 0.97295 1.24603 1.00733 0.94966 0.96243 1.20931 0.88110 1.02149 1.05750 1.84376 0.95149 1.08292 1.69570 0.89611 0.90176 0.90351 0.84394 0.78181 1.16698 1.16962 0.74526 0.91021 0.89976 0.90582 0.90758 0.90948 0.89025 0.77393 0.89030 0.90781 0.87935 0.90191 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.15 8.47 36.01 0.30 0.46 16 2 C -0.19 -0.10 6.12 -36.00 -0.22 -0.32 16 3 C -0.06 -0.08 4.27 -106.25 -0.45 -0.53 16 4 C -0.08 -0.12 2.17 36.01 0.08 -0.04 16 5 O -0.53 -0.44 12.82 -35.23 -0.45 -0.89 16 6 Si 0.69 0.85 30.67 -169.99 -5.21 -4.37 16 7 C -0.69 -0.84 5.86 -41.21 -0.24 -1.09 16 8 S 2.71 3.57 5.35 -107.50 -0.58 2.99 16 9 O -0.95 -2.93 14.13 -57.18 -0.81 -3.74 16 10 O -0.95 -2.75 14.83 -57.18 -0.85 -3.60 16 11 N -1.12 1.20 6.00 -10.61 -0.06 1.14 16 12 C 0.11 -0.11 5.33 -4.04 -0.02 -0.13 16 13 C -0.11 0.20 5.18 -26.74 -0.14 0.06 16 14 C -0.11 0.14 3.64 -89.81 -0.33 -0.18 16 15 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 16 C -0.17 0.10 7.48 -25.83 -0.19 -0.09 16 17 C 0.07 -0.01 5.21 -25.83 -0.13 -0.15 16 18 H 0.08 -0.10 8.14 -51.92 -0.42 -0.53 16 19 O -0.56 -0.68 13.68 -35.23 -0.48 -1.16 16 20 C -0.12 0.06 7.47 -25.92 -0.19 -0.14 16 21 C -0.04 -0.02 6.50 -36.00 -0.23 -0.26 16 22 C -0.11 0.09 8.84 36.01 0.32 0.41 16 23 S 0.16 -0.01 23.31 -107.50 -2.51 -2.52 16 24 H 0.09 -0.25 7.86 -51.93 -0.41 -0.66 16 25 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 26 H 0.08 -0.12 3.58 -51.93 -0.19 -0.31 16 27 H 0.14 0.22 2.69 -51.93 -0.14 0.08 16 28 H 0.37 -0.57 5.35 45.56 0.24 -0.33 16 29 H -0.24 -0.78 7.11 56.52 0.40 -0.38 16 30 H -0.24 -0.28 5.84 56.52 0.33 0.05 16 31 H 0.42 -1.27 8.65 -34.47 -0.30 -1.57 16 32 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 33 H 0.08 -0.02 6.39 -51.93 -0.33 -0.36 16 34 H 0.08 -0.12 7.87 -51.93 -0.41 -0.53 16 35 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 36 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 37 H 0.09 0.00 7.92 -51.93 -0.41 -0.41 16 38 H 0.38 -1.03 9.12 45.56 0.42 -0.61 16 39 H 0.09 0.02 8.10 -51.93 -0.42 -0.40 16 40 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 41 H 0.10 -0.10 8.14 -51.92 -0.42 -0.52 16 42 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 43 H 0.10 -0.10 6.49 -51.93 -0.34 -0.44 16 LS Contribution 357.59 15.07 5.39 5.39 Total: 0.00 -7.16 357.59 -12.37 -19.54 By element: Atomic # 1 Polarization: -5.43 SS G_CDS: -5.36 Total: -10.78 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.46 Total: -2.00 kcal Atomic # 7 Polarization: 1.20 SS G_CDS: -0.06 Total: 1.14 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -2.59 Total: -9.39 kcal Atomic # 14 Polarization: 0.85 SS G_CDS: -5.21 Total: -4.37 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -3.08 Total: 0.48 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -7.16 -12.37 -19.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17837620_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.891 kcal (2) G-P(sol) polarization free energy of solvation -7.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds