Wall clock time and date at job start Mon Mar 8 2021 12:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33390 * 125.20171 * 2 1 4 4 C 1.50691 * 122.54123 * 0.03308 * 3 2 1 5 5 O 1.42902 * 109.47259 * 312.51667 * 4 3 2 6 6 Si 1.86301 * 109.47301 * 72.51276 * 4 3 2 7 7 C 1.38424 * 114.91773 * 179.75776 * 3 2 1 8 8 S 1.76205 * 122.53699 * 180.27267 * 7 3 2 9 9 O 1.42098 * 106.40169 * 29.31362 * 8 7 3 10 10 O 1.42098 * 106.39909 * 162.23581 * 8 7 3 11 11 N 1.65597 * 107.21598 * 275.77226 * 8 7 3 12 12 C 1.46502 * 120.00106 * 65.00354 * 11 8 7 13 13 C 1.52994 * 109.47425 * 164.99622 * 12 11 8 14 14 H 1.08997 * 109.47213 * 55.00173 * 13 12 11 15 15 C 1.53005 * 109.47340 * 175.00122 * 13 12 11 16 16 C 1.52994 * 109.47340 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47188 * 300.00053 * 16 15 13 18 18 H 1.08997 * 109.47041 * 300.00103 * 17 16 15 19 19 C 1.53004 * 109.47128 * 180.02562 * 17 16 15 20 20 C 1.50702 * 109.46940 * 175.00177 * 19 17 16 21 21 N 1.34778 * 119.99719 * 179.97438 * 20 19 17 22 22 O 1.21280 * 120.00244 * 359.97438 * 20 19 17 23 23 C 1.52998 * 109.47174 * 59.99995 * 17 16 15 24 24 C 1.53000 * 109.47188 * 295.00175 * 13 12 11 25 25 C 1.33392 * 114.92452 * 0.25102 * 7 3 2 26 26 C 1.50700 * 125.20408 * 179.97438 * 25 7 3 27 27 S 1.75881 * 109.59057 * 0.02562 * 25 7 3 28 28 H 1.09001 * 109.47608 * 91.66949 * 1 2 3 29 29 H 1.08999 * 109.47059 * 211.67189 * 1 2 3 30 30 H 1.08995 * 109.47406 * 331.67013 * 1 2 3 31 31 H 1.09001 * 109.47260 * 192.51280 * 4 3 2 32 32 H 0.96702 * 113.99330 * 295.19386 * 5 4 3 33 33 H 1.48505 * 109.99754 * 59.96764 * 6 4 3 34 34 H 1.48500 * 110.00040 * 181.28317 * 6 4 3 35 35 H 0.96998 * 120.00467 * 244.99437 * 11 8 7 36 36 H 1.08996 * 109.47155 * 284.99651 * 12 11 8 37 37 H 1.09005 * 109.46899 * 44.99365 * 12 11 8 38 38 H 1.09000 * 109.46888 * 300.00302 * 15 13 12 39 39 H 1.08997 * 109.46926 * 59.99875 * 15 13 12 40 40 H 1.09007 * 109.47220 * 59.99896 * 16 15 13 41 41 H 1.09000 * 109.47166 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.46831 * 294.99358 * 19 17 16 43 43 H 1.08991 * 109.47484 * 54.99895 * 19 17 16 44 44 H 0.96996 * 120.00114 * 359.97438 * 21 20 19 45 45 H 0.97001 * 119.99722 * 179.97438 * 21 20 19 46 46 H 1.08996 * 109.47444 * 59.99747 * 23 17 16 47 47 H 1.08999 * 109.47448 * 180.02562 * 23 17 16 48 48 H 1.09006 * 109.47012 * 299.99487 * 24 13 12 49 49 H 1.09000 * 109.47104 * 59.99917 * 24 13 12 50 50 H 1.08995 * 109.47178 * 84.23668 * 26 25 7 51 51 H 1.08996 * 109.46808 * 204.24162 * 26 25 7 52 52 H 1.09001 * 109.46967 * 324.23752 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 1.7051 2.4846 0.0007 5 8 0.6816 2.5809 -0.9918 6 14 0.9822 2.8589 1.6765 7 6 3.6379 0.8429 0.0053 8 16 4.8355 2.1353 0.0134 9 8 4.2335 3.2360 0.6806 10 8 6.0586 1.5462 0.4332 11 7 5.0587 2.6064 -1.5584 12 6 3.9587 3.2278 -2.3001 13 6 4.5081 3.8974 -3.5613 14 1 5.0685 3.1675 -4.1455 15 6 3.3473 4.4380 -4.3987 16 6 3.8966 5.1082 -5.6596 17 6 4.8199 6.2619 -5.2629 18 1 4.2593 6.9915 -4.6785 19 6 5.3688 6.9325 -6.5239 20 6 6.1790 8.1429 -6.1369 21 7 6.7640 8.8950 -7.0902 22 8 6.3045 8.4403 -4.9679 23 6 5.9808 5.7214 -4.4256 24 6 5.4317 5.0511 -3.1652 25 6 3.9750 -0.4478 0.0043 26 6 5.3860 -0.9771 0.0088 27 16 2.5209 -1.4371 -0.0044 28 1 -0.3634 -0.0299 -1.0272 29 1 -0.3633 -0.8746 0.5396 30 1 -0.3634 0.9045 0.4876 31 1 2.4959 3.2010 -0.2221 32 1 1.0008 2.4706 -1.8979 33 1 2.0365 2.7613 2.7177 34 1 0.3885 4.2200 1.6810 35 1 5.9178 2.4712 -1.9880 36 1 3.2330 2.4646 -2.5808 37 1 3.4747 3.9763 -1.6728 38 1 2.6892 3.6161 -4.6809 39 1 2.7869 5.1679 -3.8145 40 1 4.4574 4.3786 -6.2440 41 1 3.0697 5.4937 -6.2559 42 1 6.0026 6.2285 -7.0632 43 1 4.5405 7.2387 -7.1625 44 1 6.6639 8.6571 -8.0251 45 1 7.2851 9.6744 -6.8412 46 1 6.5414 4.9918 -5.0099 47 1 6.6383 6.5433 -4.1426 48 1 4.8713 5.7811 -2.5810 49 1 6.2587 4.6660 -2.5686 50 1 5.7585 -1.0099 1.0325 51 1 5.3986 -1.9812 -0.4149 52 1 6.0214 -0.3228 -0.5883 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17846946_15065288.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:02:30 Heat of formation + Delta-G solvation = -139.625438 kcal Electronic energy + Delta-G solvation = -35952.450556 eV Core-core repulsion = 31363.803475 eV Total energy + Delta-G solvation = -4588.647082 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.97668 -40.32380 -39.53754 -38.71654 -37.19427 -37.12336 -36.49912 -34.65277 -34.08342 -33.18195 -31.61438 -30.77756 -29.02636 -28.04290 -25.88737 -25.49242 -23.66002 -23.25387 -22.32182 -21.21812 -20.89350 -20.58670 -19.97362 -19.11791 -18.54333 -18.17867 -18.10714 -17.60100 -17.53633 -16.89943 -16.45487 -16.23315 -16.02821 -15.78036 -15.48128 -15.35685 -15.21748 -15.07657 -14.83335 -14.76947 -14.36364 -14.26707 -14.11481 -14.02316 -13.89999 -13.70673 -13.47598 -13.45838 -13.31078 -13.13895 -12.94852 -12.90202 -12.75069 -12.71175 -12.45211 -12.37695 -12.31408 -11.96335 -11.82187 -11.71882 -11.50557 -11.36890 -11.32552 -11.06997 -10.96747 -10.75880 -10.62253 -10.46577 -9.95499 -9.42814 -5.03113 -0.88764 -0.42813 0.41438 0.72454 0.79867 1.33901 1.64278 1.68948 1.89278 2.00430 2.52238 2.68543 3.09184 3.44470 3.56681 3.69109 3.76243 3.77469 3.78615 3.95183 4.02173 4.07979 4.10337 4.14275 4.23745 4.31411 4.42929 4.48935 4.52644 4.56705 4.59255 4.62375 4.65688 4.69640 4.71681 4.74874 4.83335 4.86603 4.92009 4.95132 5.05003 5.09593 5.19946 5.20955 5.23152 5.28906 5.33105 5.37043 5.39550 5.54484 5.63791 5.91413 5.92890 6.50348 6.65705 7.39287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.160 4.160 3 C -0.098 4.098 4 C -0.074 4.074 5 O -0.528 6.528 6 Si 0.785 3.215 7 C -0.695 4.695 8 S 2.707 3.293 9 O -0.988 6.988 10 O -0.976 6.976 11 N -1.102 6.102 12 C 0.111 3.889 13 C -0.082 4.082 14 H 0.097 0.903 15 C -0.115 4.115 16 C -0.107 4.107 17 C -0.074 4.074 18 H 0.051 0.949 19 C -0.135 4.135 20 C 0.505 3.495 21 N -0.846 5.846 22 O -0.593 6.593 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.059 4.059 26 C -0.116 4.116 27 S 0.185 5.815 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.378 0.622 33 H -0.289 1.289 34 H -0.281 1.281 35 H 0.429 0.571 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.418 0.582 45 H 0.401 0.599 46 H 0.070 0.930 47 H 0.050 0.950 48 H 0.044 0.956 49 H 0.057 0.943 50 H 0.094 0.906 51 H 0.102 0.898 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.042 -5.893 -11.485 13.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.278 4.278 3 C -0.108 4.108 4 C -0.186 4.186 5 O -0.334 6.334 6 Si 0.688 3.312 7 C -0.796 4.796 8 S 2.798 3.202 9 O -0.978 6.978 10 O -0.966 6.966 11 N -0.866 5.866 12 C -0.014 4.014 13 C -0.102 4.102 14 H 0.115 0.885 15 C -0.153 4.153 16 C -0.145 4.145 17 C -0.093 4.093 18 H 0.070 0.930 19 C -0.174 4.174 20 C 0.291 3.709 21 N -0.409 5.409 22 O -0.474 6.474 23 C -0.154 4.154 24 C -0.156 4.156 25 C -0.181 4.181 26 C -0.175 4.175 27 S 0.452 5.548 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.227 0.773 33 H -0.217 1.217 34 H -0.208 1.208 35 H 0.266 0.734 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.249 0.751 45 H 0.232 0.768 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.112 0.888 51 H 0.120 0.880 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.498 -6.463 -8.708 11.394 hybrid contribution 2.067 2.094 -1.411 3.264 sum -1.431 -4.369 -10.119 11.114 Atomic orbital electron populations 1.20556 0.85007 1.03969 1.04519 1.24715 1.01676 0.94199 1.07194 1.18507 0.90054 0.97119 1.05111 1.25367 0.95615 0.93140 1.04484 1.86741 1.33314 1.95064 1.18306 0.93455 0.82708 0.82380 0.72616 1.29285 1.11770 1.13298 1.25282 1.01142 0.72744 0.73250 0.73075 1.93506 1.78535 1.52557 1.73160 1.93566 1.43790 1.78569 1.80678 1.55213 1.22693 1.76223 1.32464 1.21709 0.88345 0.97263 0.94105 1.21338 0.97354 0.96925 0.94566 0.88508 1.21564 0.96715 1.00856 0.96155 1.21550 0.98872 0.96663 0.97389 1.20918 0.96404 0.97131 0.94806 0.93000 1.21817 1.00970 0.94595 1.00041 1.21376 0.79070 0.85268 0.85164 1.43905 1.54754 1.31477 1.10808 1.90732 1.63137 1.72785 1.20760 1.21638 0.97812 0.99662 0.96335 1.21586 0.99037 0.97335 0.97593 1.24761 1.01839 0.95003 0.96451 1.21000 0.87698 1.03374 1.05397 1.84311 0.94012 1.07821 1.68666 0.88578 0.89713 0.89079 0.89177 0.77259 1.21683 1.20765 0.73358 0.89238 0.91467 0.89295 0.92403 0.90223 0.90514 0.86429 0.86456 0.75121 0.76821 0.91090 0.93131 0.93731 0.92403 0.88769 0.87960 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.41 9.10 71.23 0.65 1.06 16 2 C -0.16 0.08 6.13 24.59 0.15 0.23 16 3 C -0.10 -0.27 4.25 -20.92 -0.09 -0.36 16 4 C -0.07 -0.30 2.10 71.23 0.15 -0.15 16 5 O -0.53 0.59 11.04 -148.98 -1.65 -1.06 16 6 Si 0.78 5.90 30.06 68.60 2.06 7.96 16 7 C -0.69 -2.75 5.86 21.22 0.12 -2.62 16 8 S 2.71 17.72 5.34 -56.49 -0.30 17.42 16 9 O -0.99 -13.17 13.99 -128.00 -1.79 -14.96 16 10 O -0.98 -9.96 14.86 -128.00 -1.90 -11.86 16 11 N -1.10 1.10 5.53 -187.49 -1.04 0.06 16 12 C 0.11 -0.37 4.81 86.38 0.42 0.04 16 13 C -0.08 0.40 2.21 -10.79 -0.02 0.37 16 14 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 15 C -0.11 0.75 5.20 30.59 0.16 0.91 16 16 C -0.11 0.76 5.20 30.59 0.16 0.92 16 17 C -0.07 0.13 1.84 -10.79 -0.02 0.11 16 18 H 0.05 0.20 7.95 -2.39 -0.02 0.19 16 19 C -0.13 0.75 5.18 29.85 0.15 0.90 16 20 C 0.50 0.78 7.82 87.66 0.69 1.46 16 21 N -0.85 4.46 8.87 -173.53 -1.54 2.92 16 22 O -0.59 -7.37 14.80 -3.03 -0.04 -7.42 16 23 C -0.12 -0.14 4.94 30.58 0.15 0.01 16 24 C -0.12 -0.14 5.08 30.58 0.16 0.02 16 25 C -0.06 -0.09 6.50 24.59 0.16 0.07 16 26 C -0.12 0.07 8.88 71.24 0.63 0.70 16 27 S 0.19 -0.29 23.31 -56.49 -1.32 -1.61 16 28 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 29 H 0.08 -0.63 8.14 -2.39 -0.02 -0.65 16 30 H 0.09 -0.43 4.86 -2.39 -0.01 -0.44 16 31 H 0.09 0.52 2.77 -2.39 -0.01 0.52 16 32 H 0.38 -3.12 8.86 -74.06 -0.66 -3.78 16 33 H -0.29 -4.29 7.11 99.48 0.71 -3.59 16 34 H -0.28 -3.51 7.11 99.48 0.71 -2.80 16 35 H 0.43 -1.98 8.37 -96.75 -0.81 -2.79 16 36 H 0.09 -0.73 7.89 -2.39 -0.02 -0.75 16 37 H 0.07 -0.01 6.42 -2.38 -0.02 -0.02 16 38 H 0.09 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 40 H 0.08 -0.75 8.14 -2.38 -0.02 -0.77 16 41 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 42 H 0.12 -1.18 8.14 -2.39 -0.02 -1.20 16 43 H 0.12 -1.16 8.14 -2.39 -0.02 -1.18 16 44 H 0.42 -5.11 8.83 -92.71 -0.82 -5.93 16 45 H 0.40 -1.96 8.93 -92.71 -0.83 -2.79 16 46 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 47 H 0.05 0.42 5.95 -2.39 -0.01 0.40 16 48 H 0.04 0.25 8.14 -2.38 -0.02 0.23 16 49 H 0.06 0.10 7.54 -2.39 -0.02 0.08 16 50 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 51 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 52 H 0.10 -0.04 6.44 -2.39 -0.02 -0.06 16 Total: 0.00 -28.25 417.80 -5.97 -34.23 By element: Atomic # 1 Polarization: -27.29 SS G_CDS: -2.07 Total: -29.36 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 3.61 Total: 3.68 kcal Atomic # 7 Polarization: 5.56 SS G_CDS: -2.58 Total: 2.98 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -5.38 Total: -35.29 kcal Atomic # 14 Polarization: 5.90 SS G_CDS: 2.06 Total: 7.96 kcal Atomic # 16 Polarization: 17.43 SS G_CDS: -1.62 Total: 15.81 kcal Total: -28.25 -5.97 -34.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17846946_15065288.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.399 kcal (2) G-P(sol) polarization free energy of solvation -28.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds