Wall clock time and date at job start Mon Mar 8 2021 12:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86298 * 109.47180 * 2 1 4 4 C 1.50703 * 109.47023 * 240.00149 * 2 1 3 5 5 C 1.33387 * 125.20583 * 313.52710 * 4 2 1 6 6 S 1.76200 * 122.53428 * 0.02562 * 5 4 2 7 7 O 1.42094 * 106.40447 * 313.38722 * 6 5 4 8 8 O 1.42106 * 106.39765 * 180.47106 * 6 5 4 9 9 N 1.65602 * 107.22083 * 66.93044 * 6 5 4 10 10 C 1.46493 * 120.00008 * 65.96019 * 9 6 5 11 11 H 1.08998 * 109.47140 * 334.97149 * 10 9 6 12 12 C 1.53008 * 109.46930 * 94.97039 * 10 9 6 13 13 C 1.53005 * 109.46772 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47054 * 299.99859 * 13 12 10 15 15 H 1.08998 * 109.47417 * 300.00178 * 14 13 12 16 16 O 1.42900 * 109.46770 * 180.02562 * 14 13 12 17 17 C 1.42899 * 114.00007 * 90.00402 * 16 14 13 18 18 F 1.39901 * 109.47247 * 59.99740 * 17 16 14 19 19 F 1.39897 * 109.47425 * 179.97438 * 17 16 14 20 20 F 1.39905 * 109.47102 * 299.99694 * 17 16 14 21 21 C 1.52998 * 109.47244 * 60.00457 * 14 13 12 22 22 C 1.52998 * 109.47212 * 214.97140 * 10 9 6 23 23 C 1.38420 * 114.92342 * 179.75419 * 5 4 2 24 24 C 1.33383 * 114.92186 * 0.24616 * 23 5 4 25 25 S 1.75888 * 109.59436 * 359.97438 * 24 23 5 26 26 H 0.96697 * 114.00320 * 59.93917 * 1 2 3 27 27 H 1.09002 * 109.47716 * 120.00567 * 2 1 3 28 28 H 1.48499 * 109.99902 * 60.00399 * 3 2 1 29 29 H 1.48505 * 109.99923 * 181.32135 * 3 2 1 30 30 H 0.96999 * 119.99562 * 245.96557 * 9 6 5 31 31 H 1.08993 * 109.47238 * 299.99953 * 12 10 9 32 32 H 1.08998 * 109.47120 * 60.00097 * 12 10 9 33 33 H 1.08999 * 109.46805 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47154 * 60.00198 * 13 12 10 35 35 H 1.08998 * 109.47141 * 59.99552 * 21 14 13 36 36 H 1.08993 * 109.47266 * 179.97438 * 21 14 13 37 37 H 1.08999 * 109.47207 * 60.00087 * 22 10 9 38 38 H 1.08998 * 109.47075 * 300.00049 * 22 10 9 39 39 H 1.08002 * 122.54004 * 180.22804 * 23 5 4 40 40 H 1.08006 * 125.20647 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.4799 -1.8823 -1.6800 6 16 0.1982 -2.7785 -0.8684 7 8 0.5244 -2.7817 0.5146 8 8 -0.0006 -3.9662 -1.6228 9 7 -1.1917 -1.8908 -1.0189 10 6 -1.7907 -1.6863 -2.3400 11 1 -1.0204 -1.7755 -3.1060 12 6 -2.8720 -2.7422 -2.5788 13 6 -3.4981 -2.5281 -3.9584 14 6 -4.1239 -1.1335 -4.0236 15 1 -4.8940 -1.0446 -3.2573 16 8 -4.7091 -0.9338 -5.3119 17 6 -6.0767 -1.3389 -5.3981 18 9 -6.8386 -0.6073 -4.4807 19 9 -6.5525 -1.1024 -6.6922 20 9 -6.1783 -2.7033 -5.1055 21 6 -3.0426 -0.0776 -3.7849 22 6 -2.4164 -0.2916 -2.4060 23 6 2.0906 -2.3383 -2.8355 24 6 3.0415 -1.5391 -3.3215 25 16 3.2043 -0.1222 -2.2922 26 1 -0.3934 0.4425 -0.7645 27 1 1.7924 -0.5139 0.8899 28 1 1.5615 2.4678 1.2085 29 1 3.5346 1.7702 -0.0322 30 1 -1.6091 -1.5063 -0.2323 31 1 -2.4263 -3.7357 -2.5318 32 1 -3.6424 -2.6530 -1.8128 33 1 -4.2687 -3.2800 -4.1282 34 1 -2.7280 -2.6170 -4.7246 35 1 -2.2725 -0.1665 -4.5511 36 1 -3.4883 0.9159 -3.8318 37 1 -1.6461 0.4606 -2.2359 38 1 -3.1867 -0.2024 -1.6400 39 1 1.8181 -3.2706 -3.3075 40 1 3.6227 -1.7325 -4.2111 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17849240_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:42:48 Heat of formation + Delta-G solvation = -273.376636 kcal Electronic energy + Delta-G solvation = -33788.130998 eV Core-core repulsion = 28601.124630 eV Total energy + Delta-G solvation = -5187.006368 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 388.050 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.21148 -48.96875 -48.89614 -40.56877 -39.66077 -38.50545 -38.24656 -37.35310 -36.93136 -34.53836 -31.87988 -31.77250 -29.38139 -27.50399 -26.24467 -24.42707 -23.79238 -23.34404 -21.83594 -21.28086 -20.37018 -20.07722 -19.91965 -19.63810 -19.21791 -18.60676 -18.18597 -17.34954 -16.96932 -16.69691 -16.36762 -16.09223 -15.94307 -15.69096 -15.53201 -15.36562 -15.32379 -15.31471 -15.17095 -15.09369 -15.04604 -14.75076 -14.39318 -14.21793 -14.04791 -13.92871 -13.85809 -13.51981 -13.29251 -13.20128 -13.09576 -13.03739 -12.82621 -12.60957 -12.35596 -12.14913 -12.08790 -11.96418 -11.64318 -11.48155 -11.13607 -10.87308 -10.29947 -10.17641 -9.76276 -5.14349 -0.68355 -0.49919 0.35641 0.63885 0.87083 1.09087 1.12249 1.56622 1.89015 2.04379 2.14690 2.72513 2.99918 3.09455 3.19987 3.33871 3.48295 3.59547 3.64043 3.90193 3.92984 4.01227 4.13334 4.17406 4.22639 4.31887 4.37047 4.39689 4.51517 4.65548 4.75461 4.84513 4.87857 4.93893 5.11634 5.13186 5.18005 5.19511 5.33812 5.34086 5.52531 6.26561 6.55497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.533 6.533 2 C -0.073 4.073 3 Si 0.754 3.246 4 C -0.104 4.104 5 C -0.671 4.671 6 S 2.723 3.277 7 O -0.989 6.989 8 O -0.991 6.991 9 N -1.084 6.084 10 C 0.146 3.854 11 H 0.094 0.906 12 C -0.137 4.137 13 C -0.144 4.144 14 C 0.074 3.926 15 H 0.091 0.909 16 O -0.372 6.372 17 C 0.595 3.405 18 F -0.176 7.176 19 F -0.151 7.151 20 F -0.178 7.178 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.096 4.096 24 C -0.207 4.207 25 S 0.180 5.820 26 H 0.397 0.603 27 H 0.131 0.869 28 H -0.261 1.261 29 H -0.262 1.262 30 H 0.433 0.567 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.157 0.843 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 7.368 -2.764 7.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.184 4.184 3 Si 0.654 3.346 4 C -0.225 4.225 5 C -0.773 4.773 6 S 2.811 3.189 7 O -0.979 6.979 8 O -0.981 6.981 9 N -0.848 5.848 10 C 0.039 3.961 11 H 0.112 0.888 12 C -0.176 4.176 13 C -0.183 4.183 14 C 0.019 3.981 15 H 0.109 0.891 16 O -0.297 6.297 17 C 0.503 3.497 18 F -0.158 7.158 19 F -0.132 7.132 20 F -0.160 7.160 21 C -0.147 4.147 22 C -0.156 4.156 23 C -0.124 4.124 24 C -0.343 4.343 25 S 0.444 5.556 26 H 0.250 0.750 27 H 0.148 0.852 28 H -0.186 1.186 29 H -0.188 1.188 30 H 0.274 0.726 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.174 0.826 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.736 8.114 -1.731 8.736 hybrid contribution -0.914 -1.908 0.082 2.117 sum 1.822 6.206 -1.649 6.675 Atomic orbital electron populations 1.86556 1.15287 1.81392 1.51040 1.25200 0.86569 1.11804 0.94794 0.94116 0.79572 0.73381 0.87507 1.25226 0.99860 0.97012 1.00445 1.29741 1.24893 1.10151 1.12475 1.00798 0.73140 0.72857 0.72091 1.93541 1.84306 1.86969 1.33072 1.93550 1.85790 1.45067 1.73705 1.55314 1.40697 1.72946 1.15862 1.21032 0.95879 0.96322 0.82842 0.88836 1.22041 0.99035 1.00066 0.96483 1.22144 1.01603 0.95823 0.98697 1.22946 0.96879 0.97485 0.80840 0.89084 1.88370 1.20087 1.83240 1.37963 1.19591 0.81261 0.74543 0.74328 1.93259 1.77245 1.77763 1.67542 1.93263 1.87616 1.94442 1.37883 1.93263 1.96028 1.33434 1.93251 1.21602 0.96654 0.97937 0.98478 1.21886 1.02001 0.95049 0.96627 1.19869 0.96609 1.01795 0.94103 1.26221 1.04055 0.98346 1.05671 1.84427 1.33078 1.21653 1.16414 0.75047 0.85217 1.18603 1.18772 0.72646 0.91393 0.89958 0.91143 0.90082 0.89613 0.88761 0.87014 0.88926 0.82550 0.78659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 3.85 8.58 -144.65 -1.24 2.61 16 2 C -0.07 0.26 2.07 71.24 0.15 0.41 16 3 Si 0.75 -4.88 31.06 68.60 2.13 -2.74 16 4 C -0.10 0.24 5.75 24.59 0.14 0.39 16 5 C -0.67 -0.23 5.70 21.21 0.12 -0.11 16 6 S 2.72 9.94 4.85 -56.49 -0.27 9.67 16 7 O -0.99 -10.66 16.64 -124.34 -2.07 -12.73 16 8 O -0.99 -9.47 16.58 -128.00 -2.12 -11.59 16 9 N -1.08 5.81 3.49 -169.39 -0.59 5.22 16 10 C 0.15 -1.19 2.65 44.99 0.12 -1.07 16 11 H 0.09 -0.81 7.91 -2.39 -0.02 -0.83 16 12 C -0.14 0.61 5.53 30.60 0.17 0.77 16 13 C -0.14 0.58 5.39 30.60 0.17 0.74 16 14 C 0.07 -0.41 2.40 30.59 0.07 -0.34 16 15 H 0.09 -0.62 7.20 -2.39 -0.02 -0.64 16 16 O -0.37 0.26 10.24 -148.98 -1.53 -1.26 16 17 C 0.59 0.62 3.71 113.37 0.42 1.04 16 18 F -0.18 -0.14 16.61 44.97 0.75 0.61 16 19 F -0.15 -0.50 17.53 44.97 0.79 0.29 16 20 F -0.18 -0.33 15.44 44.97 0.69 0.36 16 21 C -0.11 1.17 5.57 30.58 0.17 1.34 16 22 C -0.12 1.62 5.26 30.58 0.16 1.78 16 23 C -0.10 0.06 9.69 21.21 0.21 0.26 16 24 C -0.21 0.83 11.23 66.72 0.75 1.58 16 25 S 0.18 -0.84 20.70 -56.49 -1.17 -2.01 16 26 H 0.40 -6.43 6.49 -74.06 -0.48 -6.91 16 27 H 0.13 0.03 7.74 -2.39 -0.02 0.01 16 28 H -0.26 0.18 7.11 99.48 0.71 0.89 16 29 H -0.26 0.51 7.11 99.48 0.71 1.22 16 30 H 0.43 -3.56 7.69 -96.75 -0.74 -4.31 16 31 H 0.07 0.03 7.64 -2.39 -0.02 0.01 16 32 H 0.08 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.12 6.50 -2.39 -0.02 -0.13 16 34 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.09 -0.92 8.14 -2.39 -0.02 -0.94 16 36 H 0.09 -1.12 8.14 -2.39 -0.02 -1.14 16 37 H 0.11 -2.16 6.48 -2.39 -0.02 -2.18 16 38 H 0.09 -1.41 8.14 -2.39 -0.02 -1.43 16 39 H 0.16 -0.12 7.74 -2.91 -0.02 -0.15 16 40 H 0.20 -1.73 8.06 -2.91 -0.02 -1.75 16 Total: 0.00 -21.88 355.05 -2.05 -23.92 By element: Atomic # 1 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.14 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 2.64 Total: 6.80 kcal Atomic # 7 Polarization: 5.81 SS G_CDS: -0.59 Total: 5.22 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -6.96 Total: -22.97 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 2.23 Total: 1.25 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.13 Total: -2.74 kcal Atomic # 16 Polarization: 9.10 SS G_CDS: -1.44 Total: 7.66 kcal Total: -21.88 -2.05 -23.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849240_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.452 kcal (2) G-P(sol) polarization free energy of solvation -21.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -273.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds