Wall clock time and date at job start Mon Mar 8 2021 12:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.33870 * 124.19282 * 2 1 4 4 O 1.21536 * 123.78831 * 0.03412 * 3 2 1 5 5 N 1.34670 * 112.42077 * 179.76750 * 3 2 1 6 6 C 1.46862 * 106.42520 * 0.22678 * 5 3 2 7 7 C 1.52468 * 110.48566 * 241.45609 * 6 5 3 8 8 C 1.53080 * 109.58229 * 178.66369 * 7 6 5 9 9 C 1.53014 * 109.41728 * 59.14770 * 8 7 6 10 10 N 1.46505 * 109.46418 * 179.51539 * 9 8 7 11 11 S 1.65605 * 119.99845 * 215.10607 * 10 9 8 12 12 O 1.42096 * 106.39898 * 179.29959 * 11 10 9 13 13 O 1.42107 * 106.40082 * 312.21946 * 11 10 9 14 14 C 1.76197 * 107.21778 * 65.75685 * 11 10 9 15 15 C 1.33388 * 125.20430 * 184.94667 * 14 11 10 16 16 C 1.50702 * 122.53639 * 0.02562 * 15 14 11 17 17 O 1.42895 * 109.47532 * 284.99693 * 16 15 14 18 18 Si 1.86302 * 109.46995 * 164.99774 * 16 15 14 19 19 C 1.38420 * 114.92342 * 179.86482 * 15 14 11 20 20 C 1.33388 * 114.91813 * 0.43004 * 19 15 14 21 21 S 1.75883 * 109.59664 * 359.77254 * 20 19 15 22 22 C 1.52995 * 109.51181 * 299.53045 * 9 8 7 23 23 C 1.52477 * 110.48510 * 118.54973 * 6 5 3 24 24 C 1.34912 * 124.20091 * 180.18141 * 2 1 3 25 25 O 1.21237 * 127.24891 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47477 * 0.02766 * 1 2 3 27 27 H 1.09001 * 109.47034 * 120.03036 * 1 2 3 28 28 H 1.09000 * 109.47112 * 240.02468 * 1 2 3 29 29 H 0.97003 * 126.79331 * 180.23275 * 5 3 2 30 30 H 1.08992 * 109.45652 * 298.70026 * 7 6 5 31 31 H 1.09001 * 109.45424 * 58.63754 * 7 6 5 32 32 H 1.09003 * 109.48369 * 299.17007 * 8 7 6 33 33 H 1.08997 * 109.48831 * 179.13358 * 8 7 6 34 34 H 1.09007 * 109.46332 * 59.54470 * 9 8 7 35 35 H 0.96996 * 120.00210 * 35.11048 * 10 9 8 36 36 H 1.08997 * 109.47120 * 45.00023 * 16 15 14 37 37 H 0.96701 * 114.00292 * 300.00948 * 17 16 15 38 38 H 1.48501 * 109.99776 * 58.68168 * 18 16 15 39 39 H 1.48501 * 109.99948 * 180.02562 * 18 16 15 40 40 H 1.08000 * 122.54146 * 180.20236 * 19 15 14 41 41 H 1.08003 * 125.20210 * 179.79040 * 20 19 15 42 42 H 1.08999 * 109.47946 * 300.48126 * 22 9 8 43 43 H 1.09001 * 109.48183 * 180.44779 * 22 9 8 44 44 H 1.09000 * 109.44577 * 301.36371 * 23 6 5 45 45 H 1.08999 * 109.45009 * 61.29451 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2173 1.1073 0.0000 4 8 1.7616 2.2340 0.0006 5 7 3.5356 0.8326 0.0051 6 6 3.6548 -0.6312 0.0032 7 6 4.3731 -1.1097 1.2601 8 6 4.4564 -2.6382 1.2530 9 6 5.2126 -3.1007 0.0058 10 7 5.3030 -4.5629 0.0039 11 16 6.6549 -5.3081 -0.5958 12 8 6.4441 -6.7050 -0.4431 13 8 6.9283 -4.6957 -1.8486 14 6 7.9965 -4.8882 0.4665 15 6 9.2720 -5.2211 0.2627 16 6 9.7203 -6.0172 -0.9357 17 8 9.3510 -7.3868 -0.7632 18 14 11.5710 -5.8902 -1.1086 19 6 10.1530 -4.7771 1.2336 20 6 9.5917 -4.0912 2.2305 21 16 7.8575 -3.9726 1.9618 22 6 4.4671 -2.6342 -1.2461 23 6 4.3837 -1.1057 -1.2492 24 6 2.2233 -1.1158 -0.0035 25 8 1.8376 -2.2652 -0.0067 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5143 -0.8897 28 1 -0.3633 -0.5134 0.8902 29 1 4.2629 1.4745 0.0092 30 1 5.3792 -0.6915 1.2847 31 1 3.8218 -0.7804 2.1409 32 1 3.4501 -3.0571 1.2440 33 1 4.9836 -2.9778 2.1445 34 1 6.2161 -2.6749 0.0108 35 1 4.5711 -5.0946 0.3537 36 1 9.2437 -5.6227 -1.8330 37 1 9.7397 -7.8037 0.0180 38 1 12.2318 -6.3956 0.1215 39 1 12.0257 -6.6706 -2.2873 40 1 11.2139 -4.9743 1.1894 41 1 10.1211 -3.6724 3.0735 42 1 3.4608 -3.0532 -1.2471 43 1 5.0019 -2.9707 -2.1343 44 1 3.8397 -0.7735 -2.1334 45 1 5.3900 -0.6872 -1.2639 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17849356_13652106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:43:11 Heat of formation + Delta-G solvation = -92.773166 kcal Electronic energy + Delta-G solvation = -35401.971102 eV Core-core repulsion = 30641.408160 eV Total energy + Delta-G solvation = -4760.562942 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.084 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -43.87025 -40.33997 -40.14898 -39.17495 -38.09919 -37.31927 -37.24352 -36.79406 -36.17345 -33.90854 -32.32241 -31.55534 -29.45971 -28.97627 -28.09271 -25.10307 -24.45289 -24.25458 -23.21471 -22.68631 -21.76955 -20.70292 -19.94778 -19.74331 -19.16626 -18.64917 -18.17253 -18.03953 -17.71502 -17.38038 -16.81730 -16.70936 -16.50394 -16.23831 -16.18998 -15.96095 -15.85037 -15.53566 -15.37319 -15.02851 -14.74138 -14.62254 -14.28656 -14.12887 -14.00975 -13.94116 -13.66245 -13.65695 -13.62144 -13.38935 -13.06499 -12.95927 -12.77985 -12.69411 -12.64372 -12.49738 -12.41369 -12.29174 -11.95216 -11.81339 -11.66335 -10.96986 -10.88029 -10.78917 -10.76323 -10.54886 -10.50956 -9.78195 -5.07450 -0.75472 -0.70424 0.12392 0.47900 0.49276 1.10051 1.10114 1.13152 1.46994 1.84700 1.86887 1.90036 1.94703 2.62069 2.70598 3.18067 3.20987 3.22585 3.36492 3.44108 3.59750 3.74465 3.78421 3.84287 3.88690 3.92723 3.98844 4.03478 4.13022 4.25690 4.27429 4.33847 4.37252 4.40681 4.53268 4.55726 4.61258 4.63311 4.69044 4.74310 4.82638 4.87629 4.93361 5.07306 5.20860 5.63997 5.78734 5.90491 6.25769 6.28789 7.01267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.581 5.581 3 C 0.702 3.298 4 O -0.539 6.539 5 N -0.719 5.719 6 C 0.119 3.881 7 C -0.110 4.110 8 C -0.136 4.136 9 C 0.153 3.847 10 N -1.113 6.113 11 S 2.715 3.285 12 O -0.932 6.932 13 O -0.942 6.942 14 C -0.767 4.767 15 C 0.008 3.992 16 C -0.108 4.108 17 O -0.511 6.511 18 Si 0.711 3.289 19 C -0.163 4.163 20 C -0.162 4.162 21 S 0.204 5.796 22 C -0.147 4.147 23 C -0.111 4.111 24 C 0.531 3.469 25 O -0.452 6.452 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.442 0.558 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.424 0.576 36 H 0.131 0.869 37 H 0.379 0.621 38 H -0.253 1.253 39 H -0.248 1.248 40 H 0.157 0.843 41 H 0.179 0.821 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.590 3.991 4.374 6.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.328 5.328 3 C 0.402 3.598 4 O -0.412 6.412 5 N -0.383 5.383 6 C 0.028 3.972 7 C -0.149 4.149 8 C -0.175 4.175 9 C 0.046 3.954 10 N -0.874 5.874 11 S 2.799 3.201 12 O -0.922 6.922 13 O -0.932 6.932 14 C -0.967 4.967 15 C -0.009 4.009 16 C -0.219 4.219 17 O -0.317 6.317 18 Si 0.610 3.390 19 C -0.193 4.193 20 C -0.300 4.300 21 S 0.470 5.530 22 C -0.187 4.187 23 C -0.150 4.150 24 C 0.317 3.683 25 O -0.321 6.321 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.287 0.713 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.260 0.740 36 H 0.149 0.851 37 H 0.227 0.773 38 H -0.178 1.178 39 H -0.172 1.172 40 H 0.174 0.826 41 H 0.196 0.804 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.101 0.899 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.425 3.908 3.861 6.005 hybrid contribution 1.064 -1.022 0.852 1.704 sum 3.489 2.885 4.712 6.535 Atomic orbital electron populations 1.21911 0.74686 1.05364 1.03720 1.46346 1.09811 1.07977 1.68620 1.15940 0.82221 0.84183 0.77419 1.91049 1.75153 1.20301 1.54659 1.45590 1.06699 1.07020 1.79002 1.21189 0.94679 0.81462 0.99829 1.21639 1.01909 0.96281 0.95118 1.22025 1.03352 0.94477 0.97656 1.20874 1.00238 0.78400 0.95910 1.55684 1.34644 1.15193 1.81840 1.01644 0.71889 0.73214 0.73379 1.93663 1.84195 1.28425 1.85879 1.93615 1.84543 1.77893 1.37148 1.35778 1.19583 1.21861 1.19445 1.18977 0.90861 0.94633 0.96443 1.25391 1.15735 0.83325 0.97453 1.86769 1.73121 1.21458 1.50374 0.94629 0.72074 0.91161 0.81168 1.20343 1.01754 1.02325 0.94872 1.26139 0.97934 1.02812 1.03074 1.84031 1.05202 1.49681 1.14060 1.22233 1.03650 0.93977 0.98838 1.21660 1.01685 0.96735 0.94931 1.20642 0.88039 0.84946 0.74631 1.90775 1.78877 1.17489 1.44959 0.88319 0.90212 0.90232 0.71312 0.88903 0.89862 0.88745 0.89825 0.89439 0.73957 0.85085 0.77255 1.17821 1.17206 0.82613 0.80367 0.89020 0.88877 0.89925 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.11 10.89 59.84 0.65 0.54 16 2 N -0.58 -0.06 3.01 -128.25 -0.39 -0.45 16 3 C 0.70 0.72 8.63 -87.82 -0.76 -0.04 16 4 O -0.54 -2.55 17.24 5.33 0.09 -2.46 16 5 N -0.72 1.78 5.88 -53.87 -0.32 1.47 16 6 C 0.12 -0.33 1.01 -133.10 -0.13 -0.47 16 7 C -0.11 0.48 5.10 -26.96 -0.14 0.34 16 8 C -0.14 0.49 5.20 -26.68 -0.14 0.36 16 9 C 0.15 -0.38 2.20 -67.92 -0.15 -0.53 16 10 N -1.11 1.33 5.28 -4.88 -0.03 1.30 16 11 S 2.71 5.88 5.06 -107.50 -0.54 5.34 16 12 O -0.93 -5.27 17.84 -57.22 -1.02 -6.29 16 13 O -0.94 -3.79 16.40 -57.17 -0.94 -4.73 16 14 C -0.77 -0.46 6.37 29.04 0.18 -0.28 16 15 C 0.01 0.00 5.13 -106.25 -0.55 -0.54 16 16 C -0.11 -0.11 2.33 36.01 0.08 -0.03 16 17 O -0.51 -1.37 12.70 -35.23 -0.45 -1.82 16 18 Si 0.71 -0.93 30.45 -169.99 -5.18 -6.10 16 19 C -0.16 0.28 8.74 -41.21 -0.36 -0.08 16 20 C -0.16 0.46 11.23 29.04 0.33 0.79 16 21 S 0.20 -0.48 22.12 -107.50 -2.38 -2.86 16 22 C -0.15 0.24 5.28 -26.69 -0.14 0.10 16 23 C -0.11 0.35 5.10 -26.96 -0.14 0.21 16 24 C 0.53 -0.17 6.53 -10.71 -0.07 -0.24 16 25 O -0.45 -0.61 13.94 5.59 0.08 -0.53 16 26 H 0.10 -0.11 7.45 -51.93 -0.39 -0.50 16 27 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 29 H 0.44 -2.04 8.96 -40.82 -0.37 -2.40 16 30 H 0.09 -0.59 8.14 -51.93 -0.42 -1.01 16 31 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 32 H 0.09 -0.22 6.11 -51.93 -0.32 -0.54 16 33 H 0.08 -0.40 8.14 -51.93 -0.42 -0.83 16 34 H 0.09 -0.32 7.32 -51.93 -0.38 -0.70 16 35 H 0.42 -1.10 8.84 -34.47 -0.30 -1.40 16 36 H 0.13 0.19 6.94 -51.93 -0.36 -0.17 16 37 H 0.38 -0.36 8.70 45.56 0.40 0.04 16 38 H -0.25 0.15 6.81 56.52 0.38 0.53 16 39 H -0.25 -0.45 7.11 56.52 0.40 -0.05 16 40 H 0.16 -0.54 5.53 -52.49 -0.29 -0.83 16 41 H 0.18 -0.99 8.06 -52.48 -0.42 -1.41 16 42 H 0.09 -0.05 6.11 -51.93 -0.32 -0.36 16 43 H 0.09 -0.06 7.64 -51.93 -0.40 -0.45 16 44 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 45 H 0.09 -0.45 8.14 -51.93 -0.42 -0.88 16 LS Contribution 386.23 15.07 5.82 5.82 Total: 0.00 -12.85 386.23 -11.89 -24.74 By element: Atomic # 1 Polarization: -8.26 SS G_CDS: -5.32 Total: -13.58 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.33 Total: 0.14 kcal Atomic # 7 Polarization: 3.05 SS G_CDS: -0.73 Total: 2.32 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -2.24 Total: -15.82 kcal Atomic # 14 Polarization: -0.93 SS G_CDS: -5.18 Total: -6.10 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -2.92 Total: 2.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -12.85 -11.89 -24.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17849356_13652106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.031 kcal (2) G-P(sol) polarization free energy of solvation -12.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds