Wall clock time and date at job start Mon Mar 8 2021 12:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47156 * 283.88484 * 3 2 1 5 5 C 1.52999 * 109.47431 * 43.88381 * 3 2 1 6 6 C 1.52999 * 109.47481 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46895 * 300.00155 * 6 5 3 8 8 H 1.09001 * 109.46765 * 299.99517 * 7 6 5 9 9 C 1.52999 * 109.46895 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.46901 * 174.99846 * 9 7 6 11 11 S 1.65602 * 120.00318 * 164.01604 * 10 9 7 12 12 O 1.42101 * 106.40601 * 177.84922 * 11 10 9 13 13 O 1.42104 * 106.39683 * 310.76537 * 11 10 9 14 14 C 1.76192 * 107.21752 * 64.30442 * 11 10 9 15 15 C 1.38214 * 120.00180 * 64.16530 * 14 11 10 16 16 C 1.50705 * 119.99732 * 359.97438 * 15 14 11 17 17 O 1.42897 * 109.46774 * 284.13106 * 16 15 14 18 18 Si 1.86294 * 109.47007 * 164.13412 * 16 15 14 19 19 C 1.38262 * 120.00372 * 179.74254 * 15 14 11 20 20 C 1.38210 * 119.99385 * 0.52870 * 19 15 14 21 21 C 1.38264 * 120.00369 * 359.74577 * 20 19 15 22 22 C 1.38208 * 119.99767 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.47183 * 59.99662 * 7 6 5 24 24 C 1.52995 * 109.47175 * 300.00137 * 23 7 6 25 25 H 4.18739 * 15.04019 * 0.02562 * 4 2 1 26 26 H 1.09004 * 109.47265 * 299.99733 * 5 3 2 27 27 H 1.09001 * 109.47388 * 59.99872 * 5 3 2 28 28 H 1.09001 * 109.47020 * 59.99517 * 6 5 3 29 29 H 1.09002 * 109.47472 * 180.02562 * 6 5 3 30 30 H 1.08993 * 109.47007 * 294.99306 * 9 7 6 31 31 H 1.08996 * 109.47592 * 55.00002 * 9 7 6 32 32 H 0.97008 * 119.99898 * 344.01313 * 10 9 7 33 33 H 1.08999 * 109.47080 * 44.13090 * 16 15 14 34 34 H 0.96703 * 114.00168 * 299.99748 * 17 16 15 35 35 H 1.48496 * 110.00462 * 58.67869 * 18 16 15 36 36 H 1.48500 * 110.00010 * 179.97438 * 18 16 15 37 37 H 1.07988 * 120.00108 * 180.29607 * 19 15 14 38 38 H 1.08000 * 119.99939 * 179.76997 * 20 19 15 39 39 H 1.08001 * 119.99775 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99964 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.46867 * 60.00183 * 23 7 6 42 42 H 1.08998 * 109.46865 * 180.02562 * 23 7 6 43 43 H 1.09001 * 109.47261 * 299.99804 * 24 23 7 44 44 H 1.09002 * 109.47166 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0094 -0.2458 0.9976 5 6 3.1565 -1.0388 -0.9999 6 6 4.6865 -1.0385 -0.9995 7 6 5.1963 0.3475 -1.3995 8 1 4.8333 0.5941 -2.3972 9 6 6.7263 0.3479 -1.3984 10 7 7.2146 1.6365 -1.8957 11 16 8.7901 2.0789 -1.6419 12 8 8.9613 3.3375 -2.2790 13 8 9.0494 1.8651 -0.2612 14 6 9.8012 0.9346 -2.5210 15 6 9.7329 0.8695 -3.8999 16 6 8.7932 1.7768 -4.6515 17 8 7.4550 1.2945 -4.5155 18 14 9.2639 1.8028 -6.4538 19 6 10.5301 -0.0247 -4.5902 20 6 11.3874 -0.8611 -3.9004 21 6 11.4516 -0.8000 -2.5206 22 6 10.6589 0.0979 -1.8311 23 6 4.6858 1.3869 -0.3996 24 6 3.1558 1.3866 -0.4001 25 1 -1.0501 -0.0005 0.0001 26 1 2.7936 -2.0263 -0.7146 27 1 2.7930 -0.7924 -1.9976 28 1 5.0495 -1.2851 -0.0017 29 1 5.0502 -1.7787 -1.7122 30 1 7.0889 0.1894 -0.3829 31 1 7.0904 -0.4519 -2.0433 32 1 6.6150 2.2307 -2.3737 33 1 8.8590 2.7857 -4.2441 34 1 7.3226 0.3999 -4.8580 35 1 9.2091 0.4283 -7.0130 36 1 8.3443 2.6937 -7.2061 37 1 10.4802 -0.0722 -5.6678 38 1 12.0075 -1.5623 -4.4393 39 1 12.1213 -1.4539 -1.9817 40 1 10.7093 0.1460 -0.7533 41 1 5.0489 1.1402 0.5981 42 1 5.0487 2.3744 -0.6849 43 1 2.7927 1.6333 -1.3978 44 1 2.7921 2.1268 0.3126 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17850116_2726874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:48:05 Heat of formation + Delta-G solvation = -31.788729 kcal Electronic energy + Delta-G solvation = -27839.141015 eV Core-core repulsion = 24044.050276 eV Total energy + Delta-G solvation = -3795.090739 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.123 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78923 -40.19687 -38.41105 -37.69807 -36.78961 -36.58009 -33.97695 -32.92193 -32.47113 -31.84462 -31.08779 -27.05657 -26.57058 -24.50316 -23.71073 -22.95861 -22.80242 -21.11174 -20.43709 -19.26646 -19.01538 -18.37435 -18.12026 -17.43277 -16.90109 -16.56150 -16.30258 -16.09738 -15.95869 -15.76280 -15.47659 -15.36340 -15.13736 -15.06099 -14.23573 -14.12297 -14.05398 -13.78053 -13.59020 -13.45888 -13.21943 -13.14443 -13.01152 -12.88793 -12.83929 -12.47085 -12.36438 -12.15878 -12.01001 -11.62136 -11.59145 -11.52244 -11.44817 -10.90773 -10.80427 -10.76953 -10.54036 -10.38147 -10.15016 -5.04845 -0.58027 -0.30704 0.04273 1.12826 1.45351 1.84427 1.95624 1.98528 1.99552 2.30670 2.74422 3.23548 3.27172 3.32906 3.46300 3.64458 3.66813 3.71876 3.76557 3.81665 4.08953 4.09910 4.13855 4.23427 4.27025 4.39292 4.42338 4.45297 4.47967 4.48942 4.52091 4.60793 4.71926 4.74178 4.83210 4.90604 4.98122 5.03193 5.05288 5.12399 5.14088 5.18140 5.19352 5.26071 5.32269 5.45765 5.63435 6.07722 6.20528 6.76753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.020 3.980 4 H 0.092 0.908 5 C -0.108 4.108 6 C -0.114 4.114 7 C -0.092 4.092 8 H 0.083 0.917 9 C 0.126 3.874 10 N -1.098 6.098 11 S 2.698 3.302 12 O -0.957 6.957 13 O -0.960 6.960 14 C -0.657 4.657 15 C -0.011 4.011 16 C -0.132 4.132 17 O -0.516 6.516 18 Si 0.706 3.294 19 C -0.146 4.146 20 C -0.058 4.058 21 C -0.134 4.134 22 C -0.021 4.021 23 C -0.117 4.117 24 C -0.111 4.111 25 H 0.216 0.784 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.423 0.577 33 H 0.152 0.848 34 H 0.375 0.625 35 H -0.258 1.258 36 H -0.251 1.251 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.369 -4.316 -2.615 5.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.184 4.184 3 C 0.002 3.998 4 H 0.110 0.890 5 C -0.146 4.146 6 C -0.152 4.152 7 C -0.112 4.112 8 H 0.101 0.899 9 C 0.000 4.000 10 N -0.860 5.860 11 S 2.787 3.213 12 O -0.948 6.948 13 O -0.949 6.949 14 C -0.744 4.744 15 C -0.013 4.013 16 C -0.241 4.241 17 O -0.322 6.322 18 Si 0.606 3.394 19 C -0.164 4.164 20 C -0.076 4.076 21 C -0.153 4.153 22 C -0.040 4.040 23 C -0.154 4.154 24 C -0.148 4.148 25 H 0.233 0.767 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.260 0.740 33 H 0.169 0.831 34 H 0.223 0.777 35 H -0.183 1.183 36 H -0.175 1.175 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.457 -3.316 -2.576 4.445 hybrid contribution -0.997 -1.364 -0.347 1.725 sum 0.460 -4.680 -2.924 5.537 Atomic orbital electron populations 1.24972 0.96014 1.00551 1.00931 1.23093 0.94339 1.00565 1.00439 1.18367 0.84248 0.96591 1.00636 0.89006 1.21526 0.95250 0.98556 0.99274 1.21558 0.95118 0.96119 1.02397 1.21371 0.93245 0.95922 1.00632 0.89869 1.21299 0.95388 0.83987 0.99321 1.55239 1.28264 1.29472 1.73017 1.01772 0.72642 0.73337 0.73577 1.93558 1.85285 1.39107 1.76802 1.93588 1.84546 1.86100 1.30707 1.30835 1.17837 1.20186 1.05504 1.19891 0.94843 0.94402 0.92146 1.25773 0.83670 1.01226 1.13445 1.86656 1.25314 1.36364 1.83855 0.94288 0.90247 0.81807 0.73059 1.21335 0.97624 0.96925 1.00497 1.21491 0.95358 0.96156 0.94578 1.21411 0.99907 0.99365 0.94604 1.21092 0.91270 0.90986 1.00697 1.21632 0.94696 0.99350 0.99766 1.21560 0.95543 0.95410 1.02298 0.76684 0.91354 0.91426 0.91182 0.91206 0.90342 0.91960 0.74025 0.83071 0.77697 1.18328 1.17512 0.84600 0.84723 0.84607 0.83650 0.91198 0.91125 0.91445 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.30 19.25 29.55 0.57 0.26 16 2 C -0.18 -0.35 12.56 -37.13 -0.47 -0.82 16 3 C 0.02 0.00 2.56 -93.41 -0.24 -0.24 16 4 H 0.09 -0.05 8.14 -51.93 -0.42 -0.48 16 5 C -0.11 0.14 5.16 -26.73 -0.14 0.00 16 6 C -0.11 0.29 5.20 -26.73 -0.14 0.15 16 7 C -0.09 0.22 2.22 -90.62 -0.20 0.02 16 8 H 0.08 -0.20 8.14 -51.93 -0.42 -0.63 16 9 C 0.13 -0.25 5.61 -4.04 -0.02 -0.28 16 10 N -1.10 0.95 3.75 -10.62 -0.04 0.91 16 11 S 2.70 5.13 5.07 -107.50 -0.54 4.58 16 12 O -0.96 -4.20 15.54 -57.17 -0.89 -5.08 16 13 O -0.96 -4.26 16.45 -57.17 -0.94 -5.20 16 14 C -0.66 -0.48 5.87 -39.58 -0.23 -0.71 16 15 C -0.01 0.00 5.25 -104.62 -0.55 -0.55 16 16 C -0.13 0.07 2.03 36.01 0.07 0.15 16 17 O -0.52 0.84 10.61 -35.23 -0.37 0.46 16 18 Si 0.71 -1.07 30.27 -169.99 -5.15 -6.22 16 19 C -0.15 0.20 8.66 -39.58 -0.34 -0.15 16 20 C -0.06 0.11 10.05 -39.58 -0.40 -0.29 16 21 C -0.13 0.18 10.05 -39.58 -0.40 -0.22 16 22 C -0.02 0.00 9.55 -39.58 -0.38 -0.38 16 23 C -0.12 0.17 5.09 -26.73 -0.14 0.03 16 24 C -0.11 0.07 5.16 -26.73 -0.14 -0.07 16 25 H 0.22 -0.31 7.80 -54.09 -0.42 -0.73 16 26 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 27 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 28 H 0.07 -0.18 8.14 -51.93 -0.42 -0.61 16 29 H 0.07 -0.22 8.14 -51.93 -0.42 -0.64 16 30 H 0.08 -0.12 7.75 -51.93 -0.40 -0.52 16 31 H 0.06 -0.19 8.14 -51.93 -0.42 -0.62 16 32 H 0.42 -0.68 7.95 -34.47 -0.27 -0.95 16 33 H 0.15 0.11 5.38 -51.93 -0.28 -0.17 16 34 H 0.38 -1.62 8.70 45.56 0.40 -1.22 16 35 H -0.26 0.18 6.66 56.52 0.38 0.55 16 36 H -0.25 -0.40 7.11 56.52 0.40 0.00 16 37 H 0.14 -0.39 4.87 -52.49 -0.26 -0.64 16 38 H 0.13 -0.56 8.06 -52.49 -0.42 -0.98 16 39 H 0.14 -0.46 8.06 -52.49 -0.42 -0.88 16 40 H 0.15 -0.08 7.34 -52.48 -0.39 -0.46 16 41 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 42 H 0.07 -0.09 7.56 -51.93 -0.39 -0.48 16 43 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 44 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 LS Contribution 364.59 15.07 5.49 5.49 Total: 0.00 -8.09 364.59 -11.88 -19.97 By element: Atomic # 1 Polarization: -5.52 SS G_CDS: -6.31 Total: -11.83 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -3.14 Total: -3.09 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -0.04 Total: 0.91 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -2.20 Total: -9.82 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.15 Total: -6.22 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -0.54 Total: 4.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -8.09 -11.88 -19.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850116_2726874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.814 kcal (2) G-P(sol) polarization free energy of solvation -8.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds