Wall clock time and date at job start Mon Mar 8 2021 12:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47156 * 283.88484 * 3 2 1 5 5 C 1.52999 * 109.47431 * 43.88381 * 3 2 1 6 6 C 1.52999 * 109.47481 * 180.02562 * 5 3 2 7 7 C 1.53008 * 109.46895 * 300.00155 * 6 5 3 8 8 H 1.09001 * 109.46765 * 299.99517 * 7 6 5 9 9 C 1.52999 * 109.46895 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.46901 * 174.99846 * 9 7 6 11 11 S 1.65602 * 120.00318 * 164.01604 * 10 9 7 12 12 O 1.42101 * 106.40601 * 177.84922 * 11 10 9 13 13 O 1.42104 * 106.39683 * 310.76537 * 11 10 9 14 14 C 1.76192 * 107.21752 * 64.30442 * 11 10 9 15 15 C 1.38214 * 120.00180 * 64.16530 * 14 11 10 16 16 C 1.50705 * 119.99732 * 359.97438 * 15 14 11 17 17 O 1.42897 * 109.46774 * 284.13106 * 16 15 14 18 18 Si 1.86294 * 109.47007 * 164.13412 * 16 15 14 19 19 C 1.38262 * 120.00372 * 179.74254 * 15 14 11 20 20 C 1.38210 * 119.99385 * 0.52870 * 19 15 14 21 21 C 1.38264 * 120.00369 * 359.74577 * 20 19 15 22 22 C 1.38208 * 119.99767 * 359.97438 * 21 20 19 23 23 C 1.52999 * 109.47183 * 59.99662 * 7 6 5 24 24 C 1.52995 * 109.47175 * 300.00137 * 23 7 6 25 25 H 4.18739 * 15.04019 * 0.02562 * 4 2 1 26 26 H 1.09004 * 109.47265 * 299.99733 * 5 3 2 27 27 H 1.09001 * 109.47388 * 59.99872 * 5 3 2 28 28 H 1.09001 * 109.47020 * 59.99517 * 6 5 3 29 29 H 1.09002 * 109.47472 * 180.02562 * 6 5 3 30 30 H 1.08993 * 109.47007 * 294.99306 * 9 7 6 31 31 H 1.08996 * 109.47592 * 55.00002 * 9 7 6 32 32 H 0.97008 * 119.99898 * 344.01313 * 10 9 7 33 33 H 1.08999 * 109.47080 * 44.13090 * 16 15 14 34 34 H 0.96703 * 114.00168 * 299.99748 * 17 16 15 35 35 H 1.48496 * 110.00462 * 58.67869 * 18 16 15 36 36 H 1.48500 * 110.00010 * 179.97438 * 18 16 15 37 37 H 1.07988 * 120.00108 * 180.29607 * 19 15 14 38 38 H 1.08000 * 119.99939 * 179.76997 * 20 19 15 39 39 H 1.08001 * 119.99775 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99964 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.46867 * 60.00183 * 23 7 6 42 42 H 1.08998 * 109.46865 * 180.02562 * 23 7 6 43 43 H 1.09001 * 109.47261 * 299.99804 * 24 23 7 44 44 H 1.09002 * 109.47166 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0094 -0.2458 0.9976 5 6 3.1565 -1.0388 -0.9999 6 6 4.6865 -1.0385 -0.9995 7 6 5.1963 0.3475 -1.3995 8 1 4.8333 0.5941 -2.3972 9 6 6.7263 0.3479 -1.3984 10 7 7.2146 1.6365 -1.8957 11 16 8.7901 2.0789 -1.6419 12 8 8.9613 3.3375 -2.2790 13 8 9.0494 1.8651 -0.2612 14 6 9.8012 0.9346 -2.5210 15 6 9.7329 0.8695 -3.8999 16 6 8.7932 1.7768 -4.6515 17 8 7.4550 1.2945 -4.5155 18 14 9.2639 1.8028 -6.4538 19 6 10.5301 -0.0247 -4.5902 20 6 11.3874 -0.8611 -3.9004 21 6 11.4516 -0.8000 -2.5206 22 6 10.6589 0.0979 -1.8311 23 6 4.6858 1.3869 -0.3996 24 6 3.1558 1.3866 -0.4001 25 1 -1.0501 -0.0005 0.0001 26 1 2.7936 -2.0263 -0.7146 27 1 2.7930 -0.7924 -1.9976 28 1 5.0495 -1.2851 -0.0017 29 1 5.0502 -1.7787 -1.7122 30 1 7.0889 0.1894 -0.3829 31 1 7.0904 -0.4519 -2.0433 32 1 6.6150 2.2307 -2.3737 33 1 8.8590 2.7857 -4.2441 34 1 7.3226 0.3999 -4.8580 35 1 9.2091 0.4283 -7.0130 36 1 8.3443 2.6937 -7.2061 37 1 10.4802 -0.0722 -5.6678 38 1 12.0075 -1.5623 -4.4393 39 1 12.1213 -1.4539 -1.9817 40 1 10.7093 0.1460 -0.7533 41 1 5.0489 1.1402 0.5981 42 1 5.0487 2.3744 -0.6849 43 1 2.7927 1.6333 -1.3978 44 1 2.7921 2.1268 0.3126 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17850116_2726874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:48:04 Heat of formation + Delta-G solvation = -29.461887 kcal Electronic energy + Delta-G solvation = -27839.040115 eV Core-core repulsion = 24044.050276 eV Total energy + Delta-G solvation = -3794.989840 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.123 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.68462 -40.11240 -38.55216 -37.65554 -37.02468 -36.54710 -33.98926 -32.81133 -32.37258 -31.75945 -31.06992 -26.96411 -26.50246 -24.41807 -23.61664 -22.88123 -22.71810 -21.04171 -20.46618 -19.23302 -19.02350 -18.44572 -18.06305 -17.43455 -16.82468 -16.49538 -16.22720 -16.07120 -15.87517 -15.69584 -15.50159 -15.29807 -15.06671 -14.98334 -14.16295 -14.06780 -13.99370 -13.75233 -13.52484 -13.39437 -13.28399 -13.25113 -13.11278 -12.97497 -12.84930 -12.44073 -12.33731 -12.06325 -11.96581 -11.60937 -11.48639 -11.47860 -11.40897 -10.93194 -10.77978 -10.67611 -10.44178 -10.31472 -10.04528 -4.92544 -0.64712 -0.26883 0.15187 1.22417 1.53402 1.85907 1.88276 1.91375 1.97935 2.39174 2.67532 3.29097 3.35644 3.37278 3.49427 3.74553 3.77440 3.81576 3.86417 4.00801 4.17806 4.22719 4.26664 4.32990 4.34178 4.48918 4.52210 4.53374 4.55916 4.56924 4.62591 4.74049 4.84204 4.84954 4.95014 5.00345 5.06530 5.13475 5.18745 5.20768 5.23993 5.24678 5.31922 5.32782 5.42061 5.57013 5.77559 6.15455 6.47617 6.68255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.209 4.209 3 C 0.017 3.983 4 H 0.094 0.906 5 C -0.104 4.104 6 C -0.109 4.109 7 C -0.084 4.084 8 H 0.087 0.913 9 C 0.124 3.876 10 N -1.090 6.090 11 S 2.704 3.296 12 O -0.990 6.990 13 O -0.992 6.992 14 C -0.666 4.666 15 C -0.017 4.017 16 C -0.141 4.141 17 O -0.522 6.522 18 Si 0.771 3.229 19 C -0.148 4.148 20 C -0.054 4.054 21 C -0.136 4.136 22 C -0.037 4.037 23 C -0.117 4.117 24 C -0.106 4.106 25 H 0.237 0.763 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.427 0.573 33 H 0.134 0.866 34 H 0.388 0.612 35 H -0.258 1.258 36 H -0.299 1.299 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.143 0.857 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -6.071 -3.652 7.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.209 4.209 3 C -0.001 4.001 4 H 0.112 0.888 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.104 4.104 8 H 0.106 0.894 9 C -0.001 4.001 10 N -0.853 5.853 11 S 2.796 3.204 12 O -0.980 6.980 13 O -0.982 6.982 14 C -0.755 4.755 15 C -0.018 4.018 16 C -0.249 4.249 17 O -0.330 6.330 18 Si 0.674 3.326 19 C -0.166 4.166 20 C -0.072 4.072 21 C -0.155 4.155 22 C -0.056 4.056 23 C -0.155 4.155 24 C -0.144 4.144 25 H 0.254 0.746 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.152 0.848 34 H 0.238 0.762 35 H -0.183 1.183 36 H -0.226 1.226 37 H 0.171 0.829 38 H 0.181 0.819 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.203 -5.069 -3.578 6.584 hybrid contribution -1.289 -0.829 -0.031 1.533 sum 0.913 -5.899 -3.609 6.975 Atomic orbital electron populations 1.25680 0.96981 1.00231 1.00608 1.23722 0.95374 1.00962 1.00840 1.18471 0.83422 0.97091 1.01146 0.88815 1.21486 0.96072 0.97993 0.98614 1.21538 0.94091 0.96118 1.03004 1.21305 0.92825 0.95798 1.00470 0.89437 1.21425 0.95524 0.83727 0.99467 1.55009 1.27205 1.30081 1.73024 1.01201 0.73221 0.73083 0.72898 1.93514 1.85992 1.41353 1.77118 1.93540 1.85274 1.86568 1.32827 1.30532 1.18455 1.20517 1.05955 1.19958 0.95292 0.94842 0.91740 1.25869 0.84180 1.00555 1.14338 1.86628 1.24771 1.37464 1.84097 0.93463 0.88910 0.79633 0.70577 1.21566 0.97183 0.96443 1.01383 1.21871 0.94911 0.95978 0.94455 1.21704 0.99617 0.99007 0.95175 1.21234 0.91861 0.91653 1.00895 1.21636 0.94138 0.99663 1.00061 1.21502 0.95977 0.95075 1.01797 0.74630 0.91478 0.91792 0.90883 0.89892 0.90846 0.90247 0.73559 0.84811 0.76179 1.18333 1.22623 0.82906 0.81914 0.82541 0.83878 0.91409 0.91423 0.91790 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -0.74 19.25 74.32 1.43 0.69 16 2 C -0.21 -0.96 12.56 31.12 0.39 -0.57 16 3 C 0.02 0.01 2.56 -12.60 -0.03 -0.03 16 4 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 5 C -0.10 0.26 5.16 30.59 0.16 0.42 16 6 C -0.11 0.62 5.20 30.60 0.16 0.77 16 7 C -0.08 0.40 2.22 -10.79 -0.02 0.38 16 8 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 9 C 0.12 -0.49 5.61 86.38 0.48 0.00 16 10 N -1.09 0.88 3.75 -187.51 -0.70 0.17 16 11 S 2.70 14.55 5.07 -56.49 -0.29 14.26 16 12 O -0.99 -10.81 15.54 -128.00 -1.99 -12.79 16 13 O -0.99 -10.74 16.45 -128.00 -2.11 -12.84 16 14 C -0.67 -1.28 5.87 22.27 0.13 -1.15 16 15 C -0.02 0.01 5.25 -19.86 -0.10 -0.09 16 16 C -0.14 0.12 2.03 71.24 0.14 0.27 16 17 O -0.52 1.69 10.61 -148.98 -1.58 0.11 16 18 Si 0.77 -2.58 30.27 68.60 2.08 -0.51 16 19 C -0.15 0.65 8.66 22.27 0.19 0.85 16 20 C -0.05 0.33 10.05 22.27 0.22 0.55 16 21 C -0.14 0.55 10.05 22.27 0.22 0.78 16 22 C -0.04 -0.01 9.55 22.27 0.21 0.20 16 23 C -0.12 0.24 5.09 30.59 0.16 0.40 16 24 C -0.11 0.03 5.16 30.59 0.16 0.19 16 25 H 0.24 -0.71 7.80 -4.41 -0.03 -0.74 16 26 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 27 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 28 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 30 H 0.07 -0.19 7.75 -2.39 -0.02 -0.20 16 31 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 32 H 0.43 -0.91 7.95 -96.74 -0.77 -1.67 16 33 H 0.13 0.39 5.38 -2.39 -0.01 0.38 16 34 H 0.39 -3.69 8.70 -74.05 -0.64 -4.34 16 35 H -0.26 0.85 6.66 99.48 0.66 1.51 16 36 H -0.30 -1.37 7.11 99.48 0.71 -0.66 16 37 H 0.15 -1.25 4.87 -2.92 -0.01 -1.27 16 38 H 0.16 -1.92 8.06 -2.91 -0.02 -1.94 16 39 H 0.16 -1.37 8.06 -2.91 -0.02 -1.39 16 40 H 0.14 0.00 7.34 -2.91 -0.02 -0.03 16 41 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 42 H 0.07 -0.10 7.56 -2.39 -0.02 -0.11 16 43 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.06 0.06 8.14 -2.39 -0.02 0.05 16 Total: 0.00 -19.88 364.59 -1.09 -20.97 By element: Atomic # 1 Polarization: -12.64 SS G_CDS: -0.40 Total: -13.04 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 3.90 Total: 3.66 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -0.70 Total: 0.17 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -5.67 Total: -25.52 kcal Atomic # 14 Polarization: -2.58 SS G_CDS: 2.08 Total: -0.51 kcal Atomic # 16 Polarization: 14.55 SS G_CDS: -0.29 Total: 14.26 kcal Total: -19.88 -1.09 -20.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850116_2726874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.495 kcal (2) G-P(sol) polarization free energy of solvation -19.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds