Wall clock time and date at job start Mon Mar 8 2021 11:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00122 * 2 1 4 4 O 1.20820 * 119.99842 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99521 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.91073 * 48.74860 * 5 3 2 7 7 C 1.53787 * 113.60869 * 179.97438 * 5 3 2 8 8 C 1.53784 * 87.07923 * 139.98154 * 7 5 3 9 9 H 1.09002 * 113.61478 * 89.11632 * 8 7 5 10 10 S 1.81397 * 113.61476 * 220.01727 * 8 7 5 11 11 O 1.42099 * 110.54450 * 291.62649 * 10 8 7 12 12 O 1.42100 * 110.54181 * 68.37253 * 10 8 7 13 13 O 1.52198 * 104.45023 * 179.97438 * 10 8 7 14 14 C 1.35899 * 113.99664 * 75.00492 * 13 10 8 15 15 C 1.38698 * 120.04426 * 269.71962 * 14 13 10 16 16 C 1.38264 * 119.93045 * 179.74768 * 15 14 13 17 17 Br 1.89098 * 119.98393 * 180.27586 * 16 15 14 18 18 C 1.38339 * 120.03474 * 0.53200 * 16 15 14 19 19 C 1.38269 * 120.10217 * 359.74158 * 18 16 15 20 20 C 1.50699 * 119.96799 * 179.97438 * 19 18 16 21 21 O 1.42894 * 109.47335 * 244.98044 * 20 19 18 22 22 Si 1.86296 * 109.47146 * 4.98109 * 20 19 18 23 23 C 1.38132 * 120.06533 * 359.97438 * 19 18 16 24 24 C 1.53779 * 87.08045 * 334.56667 * 8 7 5 25 25 H 1.08994 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46821 * 300.00305 * 1 2 3 27 27 H 1.08999 * 109.46775 * 59.99544 * 1 2 3 28 28 H 1.09004 * 113.61202 * 254.52907 * 7 5 3 29 29 H 1.08994 * 113.61447 * 25.43338 * 7 5 3 30 30 H 1.07992 * 120.03603 * 0.02562 * 15 14 13 31 31 H 1.07995 * 119.94988 * 179.76791 * 18 16 15 32 32 H 1.09003 * 109.46706 * 124.98261 * 20 19 18 33 33 H 0.96707 * 114.00237 * 60.00080 * 21 20 19 34 34 H 1.48498 * 110.00301 * 179.97438 * 22 20 19 35 35 H 1.48497 * 110.00343 * 301.31910 * 22 20 19 36 36 H 1.07998 * 120.01616 * 180.02562 * 23 19 18 37 37 H 1.09006 * 113.61307 * 270.88660 * 24 8 7 38 38 H 1.09007 * 113.61642 * 139.98417 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0245 0.6359 -0.7557 7 6 4.1079 2.7141 -0.0011 8 6 5.1816 2.2269 0.9862 9 1 6.0812 1.8481 0.5011 10 16 5.5400 3.4112 2.3126 11 8 6.1859 4.5642 1.7905 12 8 4.4286 3.5284 3.1902 13 8 6.6103 2.7286 3.1522 14 6 7.8438 2.7288 2.5819 15 6 8.2290 1.6801 1.7599 16 6 9.4826 1.6852 1.1767 17 35 10.0064 0.2601 0.0495 18 6 10.3559 2.7299 1.4214 19 6 9.9755 3.7732 2.2452 20 6 10.9294 4.9094 2.5102 21 8 11.2879 4.9175 3.8934 22 14 12.4611 4.6889 1.4730 23 6 8.7219 3.7752 2.8253 24 6 4.1917 1.1237 1.3962 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.5106 3.0287 -0.9640 29 1 3.4176 3.4404 0.4278 30 1 7.5488 0.8626 1.5721 31 1 11.3361 2.7306 0.9682 32 1 10.4496 5.8539 2.2536 33 1 11.7206 4.1060 4.1924 34 1 13.4098 5.8033 1.7247 35 1 13.1071 3.3900 1.7906 36 1 8.4254 4.5908 3.4683 37 1 3.5243 1.4153 2.2072 38 1 4.6621 0.1544 1.5616 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17850310_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:03:40 Heat of formation + Delta-G solvation = -144.740611 kcal Electronic energy + Delta-G solvation = -28534.787361 eV Core-core repulsion = 24099.198991 eV Total energy + Delta-G solvation = -4435.588371 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52102 -41.94341 -40.13422 -39.69205 -38.39360 -37.85797 -37.37417 -37.29301 -33.90745 -32.55231 -30.69105 -29.97681 -27.94099 -27.33401 -27.30012 -25.04546 -23.72617 -22.98430 -21.62918 -20.88441 -19.85616 -19.41543 -18.88152 -18.50063 -18.20704 -18.01264 -17.68819 -17.52376 -16.91979 -16.75774 -16.44583 -16.18250 -15.77910 -15.24487 -14.95487 -14.72171 -14.63706 -14.52072 -14.33875 -14.10991 -13.94452 -13.78649 -13.56847 -13.44919 -13.30954 -13.26194 -13.20978 -13.11186 -12.81868 -12.39860 -12.15245 -12.10277 -11.91524 -11.84594 -11.74972 -11.63361 -11.34982 -10.89046 -10.48349 -10.16485 -5.13583 -1.29811 -0.50852 -0.41708 0.11454 0.78996 1.03921 1.06621 1.40507 1.59437 1.80157 1.83768 2.32112 2.44233 2.69288 2.87938 3.00386 3.01705 3.17642 3.33450 3.36171 3.42567 3.63626 3.68521 3.76896 3.89467 3.94665 4.12842 4.17611 4.19451 4.22231 4.25835 4.33700 4.40972 4.45133 4.47806 4.56836 4.58185 4.73149 4.79414 5.16774 5.30011 6.18883 6.62975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.356 6.356 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.096 4.096 6 H 0.139 0.861 7 C -0.085 4.085 8 C -0.654 4.654 9 H 0.162 0.838 10 S 2.596 3.404 11 O -0.939 6.939 12 O -0.912 6.912 13 O -0.656 6.656 14 C 0.075 3.925 15 C -0.100 4.100 16 C -0.073 4.073 17 Br -0.018 7.018 18 C -0.073 4.073 19 C -0.092 4.092 20 C -0.079 4.079 21 O -0.523 6.523 22 Si 0.687 3.313 23 C -0.047 4.047 24 C -0.093 4.093 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.131 0.869 33 H 0.378 0.622 34 H -0.248 1.248 35 H -0.253 1.253 36 H 0.153 0.847 37 H 0.112 0.888 38 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.844 -4.617 -4.388 6.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.272 6.272 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.116 4.116 6 H 0.157 0.843 7 C -0.123 4.123 8 C -0.761 4.761 9 H 0.180 0.820 10 S 2.691 3.309 11 O -0.938 6.938 12 O -0.910 6.910 13 O -0.615 6.615 14 C 0.033 3.967 15 C -0.122 4.122 16 C -0.153 4.153 17 Br 0.068 6.932 18 C -0.093 4.093 19 C -0.093 4.093 20 C -0.188 4.188 21 O -0.329 6.329 22 Si 0.586 3.414 23 C -0.068 4.068 24 C -0.131 4.131 25 H 0.123 0.877 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.149 0.851 33 H 0.226 0.774 34 H -0.173 1.173 35 H -0.178 1.178 36 H 0.171 0.829 37 H 0.130 0.870 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.309 -3.880 -4.233 6.628 hybrid contribution -0.613 -0.747 0.944 1.351 sum 2.696 -4.627 -3.289 6.285 Atomic orbital electron populations 1.23363 0.75637 1.04151 1.02914 1.86503 1.23959 1.32986 1.83735 1.23438 0.91480 0.81684 0.72494 1.90712 1.66826 1.36385 1.44573 1.22427 0.87977 1.00125 1.01028 0.84331 1.22621 0.93825 0.95958 0.99945 1.32287 1.08264 1.16550 1.18950 0.82044 1.05587 0.74490 0.75355 0.75499 1.93673 1.72371 1.46638 1.81084 1.93686 1.51255 1.84916 1.61127 1.85771 1.27863 1.85501 1.62380 1.17861 0.82939 0.97301 0.98596 1.21312 0.96728 0.97979 0.96203 1.21497 0.95893 0.96529 1.01401 1.96893 1.91326 1.42346 1.62610 1.21312 0.99672 0.91855 0.96481 1.20269 0.95169 0.96685 0.97186 1.25157 1.04948 0.99699 0.89022 1.86663 1.80192 1.43305 1.22770 0.94929 0.76744 0.80839 0.88855 1.21365 0.91832 0.96811 0.96783 1.22677 0.95495 0.98433 0.96489 0.87712 0.91553 0.91608 0.87452 0.87230 0.82759 0.83247 0.85136 0.77367 1.17270 1.17791 0.82932 0.87007 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.25 10.57 -39.26 -0.41 -0.66 16 3 C 0.47 0.58 7.48 36.01 0.27 0.85 16 4 O -0.50 -2.17 15.65 -18.75 -0.29 -2.46 16 5 C -0.10 0.20 4.26 -90.96 -0.39 -0.19 16 6 H 0.14 -0.66 8.14 -51.93 -0.42 -1.08 16 7 C -0.09 0.15 6.99 -25.91 -0.18 -0.03 16 8 C -0.65 1.64 4.03 -25.92 -0.10 1.53 16 9 H 0.16 -0.87 6.13 -51.93 -0.32 -1.19 16 10 S 2.60 3.49 5.13 -107.50 -0.55 2.94 16 11 O -0.94 -2.97 16.26 -67.03 -1.09 -4.06 16 12 O -0.91 -4.37 17.27 -67.04 -1.16 -5.53 16 13 O -0.66 -0.59 10.05 -51.75 -0.52 -1.11 16 14 C 0.08 0.01 4.79 -39.22 -0.19 -0.18 16 15 C -0.10 0.20 8.25 -39.40 -0.32 -0.13 16 16 C -0.07 0.14 6.22 -39.53 -0.25 -0.10 16 17 Br -0.02 0.04 33.70 -68.01 -2.29 -2.25 16 18 C -0.07 0.16 8.41 -39.53 -0.33 -0.17 16 19 C -0.09 0.13 5.35 -104.65 -0.56 -0.43 16 20 C -0.08 0.14 2.80 36.01 0.10 0.25 16 21 O -0.52 0.23 12.83 -35.23 -0.45 -0.23 16 22 Si 0.69 -1.86 29.88 -169.99 -5.08 -6.94 16 23 C -0.05 -0.01 8.69 -39.43 -0.34 -0.35 16 24 C -0.09 0.24 7.19 -25.92 -0.19 0.05 16 25 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 26 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 27 H 0.07 -0.06 8.13 -51.93 -0.42 -0.48 16 28 H 0.11 -0.40 8.14 -51.93 -0.42 -0.82 16 29 H 0.11 -0.03 7.39 -51.93 -0.38 -0.42 16 30 H 0.15 -0.71 7.28 -52.49 -0.38 -1.10 16 31 H 0.15 -0.58 4.84 -52.49 -0.25 -0.83 16 32 H 0.13 -0.32 7.96 -51.93 -0.41 -0.74 16 33 H 0.38 -1.33 8.70 45.56 0.40 -0.93 16 34 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 35 H -0.25 0.34 7.01 56.52 0.40 0.73 16 36 H 0.15 0.04 8.06 -52.49 -0.42 -0.39 16 37 H 0.11 -0.15 7.38 -51.93 -0.38 -0.53 16 38 H 0.11 -0.55 8.14 -51.93 -0.42 -0.97 16 LS Contribution 357.04 15.07 5.38 5.38 Total: 0.00 -10.78 357.04 -11.79 -22.57 By element: Atomic # 1 Polarization: -5.86 SS G_CDS: -3.90 Total: -9.76 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -1.42 Total: 2.13 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -3.93 Total: -14.06 kcal Atomic # 14 Polarization: -1.86 SS G_CDS: -5.08 Total: -6.94 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -0.55 Total: 2.94 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.29 Total: -2.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -10.78 -11.79 -22.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.169 kcal (2) G-P(sol) polarization free energy of solvation -10.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds