Wall clock time and date at job start Mon Mar 8 2021 11:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00122 * 2 1 4 4 O 1.20820 * 119.99842 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99521 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.91073 * 48.74860 * 5 3 2 7 7 C 1.53787 * 113.60869 * 179.97438 * 5 3 2 8 8 C 1.53784 * 87.07923 * 139.98154 * 7 5 3 9 9 H 1.09002 * 113.61478 * 89.11632 * 8 7 5 10 10 S 1.81397 * 113.61476 * 220.01727 * 8 7 5 11 11 O 1.42099 * 110.54450 * 291.62649 * 10 8 7 12 12 O 1.42100 * 110.54181 * 68.37253 * 10 8 7 13 13 O 1.52198 * 104.45023 * 179.97438 * 10 8 7 14 14 C 1.35899 * 113.99664 * 75.00492 * 13 10 8 15 15 C 1.38698 * 120.04426 * 269.71962 * 14 13 10 16 16 C 1.38264 * 119.93045 * 179.74768 * 15 14 13 17 17 Br 1.89098 * 119.98393 * 180.27586 * 16 15 14 18 18 C 1.38339 * 120.03474 * 0.53200 * 16 15 14 19 19 C 1.38269 * 120.10217 * 359.74158 * 18 16 15 20 20 C 1.50699 * 119.96799 * 179.97438 * 19 18 16 21 21 O 1.42894 * 109.47335 * 244.98044 * 20 19 18 22 22 Si 1.86296 * 109.47146 * 4.98109 * 20 19 18 23 23 C 1.38132 * 120.06533 * 359.97438 * 19 18 16 24 24 C 1.53779 * 87.08045 * 334.56667 * 8 7 5 25 25 H 1.08994 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46821 * 300.00305 * 1 2 3 27 27 H 1.08999 * 109.46775 * 59.99544 * 1 2 3 28 28 H 1.09004 * 113.61202 * 254.52907 * 7 5 3 29 29 H 1.08994 * 113.61447 * 25.43338 * 7 5 3 30 30 H 1.07992 * 120.03603 * 0.02562 * 15 14 13 31 31 H 1.07995 * 119.94988 * 179.76791 * 18 16 15 32 32 H 1.09003 * 109.46706 * 124.98261 * 20 19 18 33 33 H 0.96707 * 114.00237 * 60.00080 * 21 20 19 34 34 H 1.48498 * 110.00301 * 179.97438 * 22 20 19 35 35 H 1.48497 * 110.00343 * 301.31910 * 22 20 19 36 36 H 1.07998 * 120.01616 * 180.02562 * 23 19 18 37 37 H 1.09006 * 113.61307 * 270.88660 * 24 8 7 38 38 H 1.09007 * 113.61642 * 139.98417 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 4.0245 0.6359 -0.7557 7 6 4.1079 2.7141 -0.0011 8 6 5.1816 2.2269 0.9862 9 1 6.0812 1.8481 0.5011 10 16 5.5400 3.4112 2.3126 11 8 6.1859 4.5642 1.7905 12 8 4.4286 3.5284 3.1902 13 8 6.6103 2.7286 3.1522 14 6 7.8438 2.7288 2.5819 15 6 8.2290 1.6801 1.7599 16 6 9.4826 1.6852 1.1767 17 35 10.0064 0.2601 0.0495 18 6 10.3559 2.7299 1.4214 19 6 9.9755 3.7732 2.2452 20 6 10.9294 4.9094 2.5102 21 8 11.2879 4.9175 3.8934 22 14 12.4611 4.6889 1.4730 23 6 8.7219 3.7752 2.8253 24 6 4.1917 1.1237 1.3962 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.5106 3.0287 -0.9640 29 1 3.4176 3.4404 0.4278 30 1 7.5488 0.8626 1.5721 31 1 11.3361 2.7306 0.9682 32 1 10.4496 5.8539 2.2536 33 1 11.7206 4.1060 4.1924 34 1 13.4098 5.8033 1.7247 35 1 13.1071 3.3900 1.7906 36 1 8.4254 4.5908 3.4683 37 1 3.5243 1.4153 2.2072 38 1 4.6621 0.1544 1.5616 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17850310_13206342.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:03:39 Heat of formation + Delta-G solvation = -146.729181 kcal Electronic energy + Delta-G solvation = -28534.873592 eV Core-core repulsion = 24099.198991 eV Total energy + Delta-G solvation = -4435.674602 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.990 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47201 -41.94751 -40.04828 -39.60437 -38.55093 -37.76894 -37.47016 -37.45219 -33.76612 -32.42900 -30.53713 -29.91242 -27.83901 -27.18393 -27.13013 -24.98247 -23.68610 -22.88863 -21.61512 -20.76202 -19.85713 -19.40044 -18.89883 -18.47993 -18.19609 -17.89892 -17.63765 -17.49649 -16.82468 -16.66389 -16.32991 -16.22242 -15.70174 -15.11858 -14.89320 -14.66775 -14.59442 -14.50147 -14.25201 -13.98600 -13.84757 -13.80562 -13.60906 -13.47182 -13.37430 -13.31943 -13.11891 -13.00947 -12.76047 -12.29075 -12.00634 -11.89716 -11.87002 -11.81724 -11.66408 -11.44121 -11.36481 -10.76748 -10.34623 -10.02738 -4.94558 -1.31089 -0.36901 -0.32832 0.27303 0.80195 1.01372 1.21339 1.56521 1.66508 1.94416 1.96698 2.34594 2.50045 2.78815 2.96133 3.16029 3.18774 3.35205 3.48632 3.56785 3.60268 3.75497 3.81664 3.88247 4.03026 4.21540 4.25904 4.27847 4.33892 4.37355 4.40916 4.54305 4.61014 4.63122 4.69039 4.70001 4.73648 4.91618 4.93575 5.27302 5.29753 6.42862 6.59176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.357 6.357 3 C 0.462 3.538 4 O -0.540 6.540 5 C -0.089 4.089 6 H 0.179 0.821 7 C -0.100 4.100 8 C -0.622 4.622 9 H 0.202 0.798 10 S 2.587 3.413 11 O -0.968 6.968 12 O -0.962 6.962 13 O -0.661 6.661 14 C 0.056 3.944 15 C -0.093 4.093 16 C -0.075 4.075 17 Br -0.009 7.009 18 C -0.068 4.068 19 C -0.090 4.090 20 C -0.092 4.092 21 O -0.545 6.545 22 Si 0.769 3.231 23 C -0.069 4.069 24 C -0.098 4.098 25 H 0.131 0.869 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.132 0.868 29 H 0.085 0.915 30 H 0.185 0.815 31 H 0.167 0.833 32 H 0.131 0.869 33 H 0.390 0.610 34 H -0.298 1.298 35 H -0.263 1.263 36 H 0.139 0.861 37 H 0.092 0.908 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 -7.156 -6.215 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C 0.306 3.694 4 O -0.430 6.430 5 C -0.108 4.108 6 H 0.196 0.804 7 C -0.138 4.138 8 C -0.733 4.733 9 H 0.219 0.781 10 S 2.687 3.313 11 O -0.967 6.967 12 O -0.960 6.960 13 O -0.620 6.620 14 C 0.014 3.986 15 C -0.114 4.114 16 C -0.155 4.155 17 Br 0.077 6.923 18 C -0.088 4.088 19 C -0.092 4.092 20 C -0.200 4.200 21 O -0.353 6.353 22 Si 0.672 3.328 23 C -0.089 4.089 24 C -0.136 4.136 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.104 0.896 30 H 0.203 0.797 31 H 0.184 0.816 32 H 0.149 0.851 33 H 0.239 0.761 34 H -0.226 1.226 35 H -0.189 1.189 36 H 0.156 0.844 37 H 0.110 0.890 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.486 -6.413 -6.017 9.872 hybrid contribution -0.968 0.023 1.508 1.792 sum 3.518 -6.390 -4.509 8.576 Atomic orbital electron populations 1.23551 0.75073 1.05739 1.02416 1.86506 1.24681 1.32723 1.83367 1.24187 0.92862 0.81179 0.71134 1.90698 1.68014 1.37663 1.46586 1.22646 0.85631 1.00264 1.02266 0.80388 1.22781 0.93783 0.96189 1.01075 1.32102 1.09721 1.14863 1.16567 0.78112 1.05617 0.73634 0.76031 0.75988 1.93625 1.72630 1.48967 1.81442 1.93620 1.52889 1.86076 1.63411 1.85739 1.28281 1.85177 1.62781 1.18092 0.82526 0.98225 0.99806 1.21592 0.97221 0.97785 0.94838 1.21601 0.95870 0.96665 1.01345 1.96918 1.91275 1.41822 1.62249 1.21505 1.00343 0.91269 0.95706 1.20240 0.94536 0.97087 0.97287 1.25440 1.05902 0.99885 0.88737 1.86628 1.80547 1.44387 1.23741 0.94026 0.73719 0.77684 0.87370 1.21455 0.92936 0.97040 0.97513 1.22835 0.95131 0.99932 0.95706 0.85086 0.92351 0.91909 0.84940 0.89618 0.79732 0.81558 0.85116 0.76051 1.22561 1.18879 0.84357 0.88994 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.56 113.37 1.20 1.15 16 2 O -0.36 -0.31 10.57 -51.41 -0.54 -0.85 16 3 C 0.46 1.15 7.48 71.24 0.53 1.68 16 4 O -0.54 -5.54 15.65 21.98 0.34 -5.19 16 5 C -0.09 0.53 4.26 -11.01 -0.05 0.49 16 6 H 0.18 -2.46 8.14 -2.39 -0.02 -2.48 16 7 C -0.10 0.42 6.99 31.12 0.22 0.63 16 8 C -0.62 3.97 4.03 31.12 0.13 4.10 16 9 H 0.20 -2.92 6.13 -2.39 -0.01 -2.94 16 10 S 2.59 10.69 5.13 -56.49 -0.29 10.40 16 11 O -0.97 -8.07 16.26 -118.57 -1.93 -10.00 16 12 O -0.96 -12.15 17.27 -118.57 -2.05 -14.20 16 13 O -0.66 -1.86 10.05 -61.51 -0.62 -2.48 16 14 C 0.06 0.01 4.79 22.50 0.11 0.12 16 15 C -0.09 0.54 8.25 22.39 0.18 0.72 16 16 C -0.07 0.44 6.22 22.30 0.14 0.58 16 17 Br -0.01 0.06 33.70 -20.37 -0.69 -0.63 16 18 C -0.07 0.39 8.41 22.30 0.19 0.58 16 19 C -0.09 0.24 5.35 -19.88 -0.11 0.13 16 20 C -0.09 0.28 2.80 71.24 0.20 0.48 16 21 O -0.54 -0.11 12.83 -148.98 -1.91 -2.02 16 22 Si 0.77 -4.37 29.88 68.60 2.05 -2.32 16 23 C -0.07 -0.11 8.69 22.37 0.19 0.09 16 24 C -0.10 0.66 7.19 31.12 0.22 0.89 16 25 H 0.13 -1.00 8.14 -2.39 -0.02 -1.01 16 26 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 27 H 0.06 -0.08 8.13 -2.39 -0.02 -0.09 16 28 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 29 H 0.09 0.10 7.39 -2.39 -0.02 0.09 16 30 H 0.19 -2.38 7.28 -2.91 -0.02 -2.40 16 31 H 0.17 -1.60 4.84 -2.91 -0.01 -1.62 16 32 H 0.13 -0.48 7.96 -2.39 -0.02 -0.50 16 33 H 0.39 -2.47 8.70 -74.05 -0.64 -3.11 16 34 H -0.30 -0.79 7.11 99.48 0.71 -0.08 16 35 H -0.26 1.05 7.01 99.48 0.70 1.75 16 36 H 0.14 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.09 -0.18 7.38 -2.38 -0.02 -0.20 16 38 H 0.14 -2.04 8.14 -2.38 -0.02 -2.06 16 Total: 0.00 -29.19 357.04 -1.96 -31.15 By element: Atomic # 1 Polarization: -16.01 SS G_CDS: 0.52 Total: -15.49 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 3.16 Total: 11.64 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -6.71 Total: -34.75 kcal Atomic # 14 Polarization: -4.37 SS G_CDS: 2.05 Total: -2.32 kcal Atomic # 16 Polarization: 10.69 SS G_CDS: -0.29 Total: 10.40 kcal Atomic # 35 Polarization: 0.06 SS G_CDS: -0.69 Total: -0.63 kcal Total: -29.19 -1.96 -31.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_13206342.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.583 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds