Wall clock time and date at job start Mon Mar 8 2021 12:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.47037 * 2 1 4 4 C 1.86290 * 109.47178 * 239.99807 * 2 1 3 5 5 C 1.86306 * 109.47328 * 119.99841 * 2 1 3 6 6 C 1.53005 * 109.47016 * 59.99678 * 5 2 1 7 7 C 1.53000 * 109.46853 * 180.02562 * 6 5 2 8 8 S 1.81403 * 109.46701 * 180.02562 * 7 6 5 9 9 O 1.42100 * 110.54436 * 68.37565 * 8 7 6 10 10 O 1.42098 * 110.54365 * 291.62343 * 8 7 6 11 11 O 1.52196 * 104.44630 * 179.97438 * 8 7 6 12 12 C 1.35904 * 114.00027 * 75.00537 * 11 8 7 13 13 C 1.38713 * 120.05607 * 89.99484 * 12 11 8 14 14 C 1.38165 * 119.96737 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.97200 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.46700 * 299.97940 * 15 14 13 17 17 Si 1.86292 * 109.47376 * 179.97438 * 15 14 13 18 18 H 1.48499 * 109.47311 * 60.00124 * 17 15 14 19 19 H 1.48506 * 109.47234 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47451 * 299.99953 * 17 15 14 21 21 C 1.38235 * 120.06577 * 0.02562 * 14 13 12 22 22 C 1.38377 * 120.09774 * 359.97438 * 21 14 13 23 23 Br 1.89096 * 119.98022 * 179.97438 * 22 21 14 24 24 C 1.38215 * 120.03789 * 0.02562 * 22 21 14 25 25 H 1.09004 * 109.46918 * 299.99815 * 1 2 3 26 26 H 1.08993 * 109.47273 * 59.99642 * 1 2 3 27 27 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47024 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46993 * 299.99674 * 3 2 1 30 30 H 1.08996 * 109.47446 * 60.00427 * 3 2 1 31 31 H 1.09007 * 109.47338 * 300.00050 * 4 2 1 32 32 H 1.09007 * 109.47088 * 59.99975 * 4 2 1 33 33 H 1.08997 * 109.47307 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.46884 * 300.00144 * 5 2 1 35 35 H 1.08997 * 109.47211 * 179.97438 * 5 2 1 36 36 H 1.09004 * 109.46733 * 59.99960 * 6 5 2 37 37 H 1.09004 * 109.47026 * 300.00478 * 6 5 2 38 38 H 1.08997 * 109.47103 * 60.00882 * 7 6 5 39 39 H 1.08997 * 109.47218 * 300.00140 * 7 6 5 40 40 H 1.08000 * 120.01420 * 0.05015 * 13 12 11 41 41 H 1.08994 * 109.46992 * 59.97647 * 15 14 13 42 42 H 0.96693 * 114.00033 * 299.99961 * 16 15 14 43 43 H 1.07995 * 119.94691 * 179.72563 * 21 14 13 44 44 H 1.07998 * 120.03040 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5210 5 6 2.4841 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5213 7 6 2.4836 -3.0417 2.7708 8 16 1.8794 -4.7522 2.7705 9 8 2.4929 -5.4975 1.7277 10 8 0.4720 -4.7840 2.9635 11 8 2.4476 -5.3558 4.0469 12 6 1.8159 -4.9493 5.1795 13 6 0.7289 -5.6626 5.6629 14 6 0.0878 -5.2473 6.8142 15 6 -1.0929 -6.0225 7.3398 16 8 -2.1282 -6.0393 6.3549 17 14 -1.7263 -5.2121 8.8930 18 1 -2.1438 -3.8196 8.5899 19 1 -2.8901 -5.9756 9.4106 20 1 -0.6504 -5.1946 9.9164 21 6 0.5282 -4.1214 7.4845 22 6 1.6123 -3.4078 7.0046 23 35 2.2115 -1.8678 7.9238 24 6 2.2568 -3.8195 5.8533 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9060 -1.5210 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8778 -1.5213 34 1 2.1207 -0.3643 2.4112 35 1 3.5741 -0.8786 1.5209 36 1 2.3373 -2.8346 0.6312 37 1 0.8840 -2.3207 1.5212 38 1 2.1198 -2.5278 3.6606 39 1 3.5735 -3.0417 2.7713 40 1 0.3842 -6.5423 5.1398 41 1 -0.7865 -7.0446 7.5623 42 1 -2.4502 -5.1617 6.1077 43 1 0.0228 -3.7961 8.3817 44 1 3.1032 -3.2627 5.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17850310_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:06:37 Heat of formation + Delta-G solvation = -156.019625 kcal Electronic energy + Delta-G solvation = -26980.170300 eV Core-core repulsion = 23002.165159 eV Total energy + Delta-G solvation = -3978.005141 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.022 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.47896 -40.08176 -38.31801 -37.72753 -37.21151 -36.05854 -33.85114 -32.52594 -30.66388 -29.78760 -28.60089 -28.47167 -28.43343 -27.29032 -25.05871 -23.44437 -22.75477 -21.46899 -19.51685 -19.12733 -18.67272 -18.21401 -17.87498 -17.11919 -16.89051 -16.40503 -16.03363 -15.75503 -15.29856 -15.08824 -14.84985 -14.71330 -14.51607 -14.31657 -14.22575 -14.13755 -13.80507 -13.73348 -13.66624 -13.43880 -13.31597 -13.29193 -13.20927 -13.18497 -13.16943 -13.14882 -13.10226 -12.41606 -12.27897 -12.12098 -12.06235 -11.96621 -11.87795 -11.61825 -10.89654 -10.86288 -10.73571 -10.64423 -10.38212 -10.13288 -1.22251 -0.47688 -0.37607 0.13666 0.84437 0.98805 1.27443 1.33287 1.65989 1.76058 1.78305 1.79847 1.86479 2.45353 2.55877 2.78410 3.02783 3.24035 3.34185 3.41718 3.44220 3.48711 3.69965 3.73174 3.91550 3.94131 4.14718 4.29684 4.42219 4.44446 4.48204 4.58113 4.61677 4.65797 4.66909 4.70332 4.70968 4.72026 4.73407 4.80946 4.83813 5.18504 5.20563 5.41477 5.49485 5.51429 6.39098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.003 2.997 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.406 4.406 6 C -0.101 4.101 7 C -0.648 4.648 8 S 2.582 3.418 9 O -0.919 6.919 10 O -0.943 6.943 11 O -0.660 6.660 12 C 0.077 3.923 13 C -0.045 4.045 14 C -0.094 4.094 15 C -0.083 4.083 16 O -0.530 6.530 17 Si 0.939 3.061 18 H -0.244 1.244 19 H -0.244 1.244 20 H -0.244 1.244 21 C -0.081 4.081 22 C -0.072 4.072 23 Br -0.019 7.019 24 C -0.101 4.101 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.381 0.619 43 H 0.144 0.856 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.032 3.912 2.738 4.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.560 4.560 2 Si 1.199 2.801 3 C -0.557 4.557 4 C -0.561 4.561 5 C -0.492 4.492 6 C -0.139 4.139 7 C -0.776 4.776 8 S 2.678 3.322 9 O -0.917 6.917 10 O -0.941 6.941 11 O -0.619 6.619 12 C 0.034 3.966 13 C -0.066 4.066 14 C -0.096 4.096 15 C -0.193 4.193 16 O -0.336 6.336 17 Si 0.760 3.240 18 H -0.168 1.168 19 H -0.167 1.167 20 H -0.168 1.168 21 C -0.101 4.101 22 C -0.152 4.152 23 Br 0.066 6.934 24 C -0.123 4.123 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.153 0.847 39 H 0.159 0.841 40 H 0.173 0.827 41 H 0.146 0.854 42 H 0.229 0.771 43 H 0.161 0.839 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.160 3.479 3.678 5.065 hybrid contribution 0.632 0.621 -0.674 1.114 sum 0.472 4.100 3.004 5.105 Atomic orbital electron populations 1.26172 1.20652 1.04619 1.04601 0.79321 0.67288 0.67027 0.66458 1.26104 1.06242 1.18821 1.04514 1.26180 1.06375 1.08185 1.15377 1.26170 1.06302 1.00358 1.16338 1.20980 1.01710 0.97030 0.94211 1.30945 1.13763 1.24097 1.08772 1.05934 0.74862 0.77476 0.73932 1.93673 1.77580 1.67716 1.52754 1.93675 1.31000 1.86157 1.83280 1.85775 1.70269 1.76236 1.29594 1.17857 0.94834 0.96360 0.87523 1.21339 0.91189 0.99325 0.94714 1.20336 0.98385 0.95659 0.95219 1.25083 0.86862 1.06039 1.01324 1.86567 1.52744 1.34245 1.60006 0.85819 0.81755 0.80261 0.76141 1.16763 1.16725 1.16784 1.21284 0.95175 0.93914 0.99731 1.21471 0.99257 0.97058 0.97426 1.96883 1.88689 1.32602 1.75190 1.21320 1.00315 0.95800 0.94901 0.91169 0.91091 0.91104 0.91253 0.91140 0.91257 0.91094 0.91093 0.91143 0.89994 0.89960 0.89839 0.89847 0.84690 0.84061 0.82669 0.85362 0.77135 0.83906 0.82798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.86 8.65 101.05 0.87 1.73 16 2 Si 1.00 -3.22 12.19 -169.99 -2.07 -5.29 16 3 C -0.45 0.91 8.65 101.05 0.87 1.78 16 4 C -0.45 0.79 8.65 101.05 0.87 1.66 16 5 C -0.41 1.19 4.45 37.16 0.17 1.36 16 6 C -0.10 0.19 4.59 -26.73 -0.12 0.07 16 7 C -0.65 1.40 5.46 37.16 0.20 1.60 16 8 S 2.58 3.68 5.17 -107.50 -0.56 3.12 16 9 O -0.92 -4.54 18.09 -67.04 -1.21 -5.76 16 10 O -0.94 -2.99 16.26 -67.03 -1.09 -4.08 16 11 O -0.66 -0.86 10.05 -51.76 -0.52 -1.38 16 12 C 0.08 0.05 4.80 -39.22 -0.19 -0.14 16 13 C -0.05 -0.02 8.61 -39.43 -0.34 -0.36 16 14 C -0.09 0.09 5.39 -104.65 -0.56 -0.48 16 15 C -0.08 0.16 2.82 36.01 0.10 0.26 16 16 O -0.53 0.39 12.77 -35.23 -0.45 -0.06 16 17 Si 0.94 -2.08 25.07 -169.99 -4.26 -6.34 16 18 H -0.24 0.55 7.11 56.52 0.40 0.95 16 19 H -0.24 0.16 7.11 56.52 0.40 0.57 16 20 H -0.24 0.48 7.11 56.52 0.40 0.88 16 21 C -0.08 0.10 8.41 -39.53 -0.33 -0.23 16 22 C -0.07 0.06 6.22 -39.54 -0.25 -0.18 16 23 Br -0.02 0.02 33.70 -68.01 -2.29 -2.27 16 24 C -0.10 0.10 8.20 -39.41 -0.32 -0.22 16 25 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 31 H 0.07 -0.11 7.79 -51.92 -0.40 -0.52 16 32 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 33 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 34 H 0.08 -0.28 7.96 -51.93 -0.41 -0.70 16 35 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 36 H 0.08 -0.21 7.79 -51.93 -0.40 -0.61 16 37 H 0.08 -0.22 7.79 -51.93 -0.40 -0.63 16 38 H 0.13 -0.53 6.60 -51.93 -0.34 -0.87 16 39 H 0.14 -0.58 8.14 -51.93 -0.42 -1.00 16 40 H 0.16 0.04 8.06 -52.49 -0.42 -0.39 16 41 H 0.13 -0.40 7.96 -51.93 -0.41 -0.82 16 42 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 43 H 0.14 -0.36 4.87 -52.49 -0.26 -0.62 16 44 H 0.15 -0.53 7.49 -52.49 -0.39 -0.93 16 LS Contribution 394.19 15.07 5.94 5.94 Total: 0.00 -8.44 394.19 -11.53 -19.97 By element: Atomic # 1 Polarization: -4.72 SS G_CDS: -5.99 Total: -10.71 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: 0.98 Total: 6.86 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -3.27 Total: -11.27 kcal Atomic # 14 Polarization: -5.30 SS G_CDS: -6.33 Total: -11.63 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -0.56 Total: 3.12 kcal Atomic # 35 Polarization: 0.02 SS G_CDS: -2.29 Total: -2.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -8.44 -11.53 -19.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.052 kcal (2) G-P(sol) polarization free energy of solvation -8.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds