Wall clock time and date at job start Mon Mar 8 2021 12:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86298 * 109.47037 * 2 1 4 4 C 1.86290 * 109.47178 * 239.99807 * 2 1 3 5 5 C 1.86306 * 109.47328 * 119.99841 * 2 1 3 6 6 C 1.53005 * 109.47016 * 59.99678 * 5 2 1 7 7 C 1.53000 * 109.46853 * 180.02562 * 6 5 2 8 8 S 1.81403 * 109.46701 * 180.02562 * 7 6 5 9 9 O 1.42100 * 110.54436 * 68.37565 * 8 7 6 10 10 O 1.42098 * 110.54365 * 291.62343 * 8 7 6 11 11 O 1.52196 * 104.44630 * 179.97438 * 8 7 6 12 12 C 1.35904 * 114.00027 * 75.00537 * 11 8 7 13 13 C 1.38713 * 120.05607 * 89.99484 * 12 11 8 14 14 C 1.38165 * 119.96737 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.97200 * 180.02562 * 14 13 12 16 16 O 1.42903 * 109.46700 * 299.97940 * 15 14 13 17 17 Si 1.86292 * 109.47376 * 179.97438 * 15 14 13 18 18 H 1.48499 * 109.47311 * 60.00124 * 17 15 14 19 19 H 1.48506 * 109.47234 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47451 * 299.99953 * 17 15 14 21 21 C 1.38235 * 120.06577 * 0.02562 * 14 13 12 22 22 C 1.38377 * 120.09774 * 359.97438 * 21 14 13 23 23 Br 1.89096 * 119.98022 * 179.97438 * 22 21 14 24 24 C 1.38215 * 120.03789 * 0.02562 * 22 21 14 25 25 H 1.09004 * 109.46918 * 299.99815 * 1 2 3 26 26 H 1.08993 * 109.47273 * 59.99642 * 1 2 3 27 27 H 1.09002 * 109.47348 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47024 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46993 * 299.99674 * 3 2 1 30 30 H 1.08996 * 109.47446 * 60.00427 * 3 2 1 31 31 H 1.09007 * 109.47338 * 300.00050 * 4 2 1 32 32 H 1.09007 * 109.47088 * 59.99975 * 4 2 1 33 33 H 1.08997 * 109.47307 * 179.97438 * 4 2 1 34 34 H 1.09004 * 109.46884 * 300.00144 * 5 2 1 35 35 H 1.08997 * 109.47211 * 179.97438 * 5 2 1 36 36 H 1.09004 * 109.46733 * 59.99960 * 6 5 2 37 37 H 1.09004 * 109.47026 * 300.00478 * 6 5 2 38 38 H 1.08997 * 109.47103 * 60.00882 * 7 6 5 39 39 H 1.08997 * 109.47218 * 300.00140 * 7 6 5 40 40 H 1.08000 * 120.01420 * 0.05015 * 13 12 11 41 41 H 1.08994 * 109.46992 * 59.97647 * 15 14 13 42 42 H 0.96693 * 114.00033 * 299.99961 * 16 15 14 43 43 H 1.07995 * 119.94691 * 179.72563 * 21 14 13 44 44 H 1.07998 * 120.03040 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5210 5 6 2.4841 -0.8782 1.5212 6 6 1.9740 -2.3207 1.5213 7 6 2.4836 -3.0417 2.7708 8 16 1.8794 -4.7522 2.7705 9 8 2.4929 -5.4975 1.7277 10 8 0.4720 -4.7840 2.9635 11 8 2.4476 -5.3558 4.0469 12 6 1.8159 -4.9493 5.1795 13 6 0.7289 -5.6626 5.6629 14 6 0.0878 -5.2473 6.8142 15 6 -1.0929 -6.0225 7.3398 16 8 -2.1282 -6.0393 6.3549 17 14 -1.7263 -5.2121 8.8930 18 1 -2.1438 -3.8196 8.5899 19 1 -2.8901 -5.9756 9.4106 20 1 -0.6504 -5.1946 9.9164 21 6 0.5282 -4.1214 7.4845 22 6 1.6123 -3.4078 7.0046 23 35 2.2115 -1.8678 7.9238 24 6 2.2568 -3.8195 5.8533 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1207 2.2702 -0.8900 30 1 2.1207 2.2703 0.8900 31 1 2.1207 -1.9060 -1.5210 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8778 -1.5213 34 1 2.1207 -0.3643 2.4112 35 1 3.5741 -0.8786 1.5209 36 1 2.3373 -2.8346 0.6312 37 1 0.8840 -2.3207 1.5212 38 1 2.1198 -2.5278 3.6606 39 1 3.5735 -3.0417 2.7713 40 1 0.3842 -6.5423 5.1398 41 1 -0.7865 -7.0446 7.5623 42 1 -2.4502 -5.1617 6.1077 43 1 0.0228 -3.7961 8.3817 44 1 3.1032 -3.2627 5.4792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17850310_14927650.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 12:06:36 Heat of formation + Delta-G solvation = -152.349484 kcal Electronic energy + Delta-G solvation = -26980.011151 eV Core-core repulsion = 23002.165159 eV Total energy + Delta-G solvation = -3977.845992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 410.022 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46220 -40.02617 -38.48100 -37.63194 -37.36585 -35.87176 -33.76082 -32.44830 -30.57474 -29.61047 -28.41868 -28.29949 -28.24707 -27.16450 -25.03135 -23.31824 -22.59378 -21.45076 -19.54657 -19.10654 -18.69651 -18.16965 -17.78546 -17.07650 -16.78109 -16.26972 -15.94187 -15.73085 -15.21131 -14.93999 -14.70541 -14.67176 -14.48817 -14.15015 -14.03023 -13.96473 -13.82629 -13.57994 -13.54454 -13.44220 -13.38738 -13.29718 -13.15291 -13.08338 -13.04489 -12.97466 -12.95691 -12.27540 -12.13478 -12.04246 -11.86295 -11.81298 -11.76237 -11.50747 -10.70717 -10.67655 -10.61410 -10.44872 -10.27210 -10.05586 -1.23435 -0.39131 -0.33288 0.22470 0.87221 1.11085 1.45275 1.48995 1.91229 1.92353 1.93935 2.01676 2.02151 2.44504 2.73997 2.76730 3.16042 3.35765 3.52106 3.53676 3.59779 3.66369 3.79049 3.84895 4.01515 4.16601 4.36569 4.45429 4.52727 4.59868 4.63741 4.70351 4.79237 4.82160 4.84237 4.87295 4.87619 4.88212 4.88772 4.90096 5.10241 5.26548 5.46436 5.60583 5.67190 5.67870 6.64851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.472 4.472 2 Si 1.068 2.932 3 C -0.463 4.463 4 C -0.475 4.475 5 C -0.409 4.409 6 C -0.120 4.120 7 C -0.627 4.627 8 S 2.576 3.424 9 O -0.966 6.966 10 O -0.970 6.970 11 O -0.666 6.666 12 C 0.059 3.941 13 C -0.063 4.063 14 C -0.092 4.092 15 C -0.086 4.086 16 O -0.549 6.549 17 Si 0.969 3.031 18 H -0.240 1.240 19 H -0.268 1.268 20 H -0.244 1.244 21 C -0.081 4.081 22 C -0.076 4.076 23 Br -0.014 7.014 24 C -0.097 4.097 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.392 0.608 43 H 0.156 0.844 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 5.503 3.901 6.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.578 4.578 2 Si 1.261 2.739 3 C -0.570 4.570 4 C -0.581 4.581 5 C -0.495 4.495 6 C -0.159 4.159 7 C -0.758 4.758 8 S 2.677 3.323 9 O -0.965 6.965 10 O -0.969 6.969 11 O -0.625 6.625 12 C 0.017 3.983 13 C -0.084 4.084 14 C -0.094 4.094 15 C -0.196 4.196 16 O -0.356 6.356 17 Si 0.791 3.209 18 H -0.163 1.163 19 H -0.193 1.193 20 H -0.167 1.167 21 C -0.101 4.101 22 C -0.156 4.156 23 Br 0.072 6.928 24 C -0.119 4.119 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.177 0.823 39 H 0.186 0.814 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.241 0.759 43 H 0.174 0.826 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.571 5.039 4.813 6.992 hybrid contribution 0.380 0.176 -1.031 1.113 sum 0.952 5.215 3.782 6.512 Atomic orbital electron populations 1.26414 1.22524 1.04404 1.04485 0.78304 0.65168 0.65364 0.65108 1.26278 1.06439 1.19905 1.04365 1.26452 1.06608 1.08372 1.16635 1.26213 1.07154 0.99290 1.16868 1.21223 1.02416 0.97880 0.94365 1.30807 1.15342 1.19699 1.09930 1.05949 0.74214 0.78945 0.73205 1.93609 1.78064 1.70215 1.54565 1.93630 1.32650 1.87163 1.83416 1.85734 1.70059 1.76913 1.29772 1.18070 0.95304 0.97310 0.87604 1.21450 0.91839 0.99575 0.95486 1.20390 0.98405 0.95803 0.94753 1.25238 0.86379 1.06693 1.01261 1.86534 1.53076 1.35518 1.60449 0.85403 0.80463 0.79794 0.75252 1.16278 1.19285 1.16706 1.21469 0.95123 0.93532 0.99976 1.21572 0.99301 0.97224 0.97507 1.96894 1.88626 1.32233 1.75096 1.21553 1.00675 0.95153 0.94519 0.90916 0.91623 0.91380 0.91138 0.91715 0.91028 0.91446 0.91617 0.91067 0.88676 0.88799 0.89671 0.89364 0.82297 0.81448 0.83524 0.84607 0.75859 0.82644 0.80296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 1.81 8.65 113.37 0.98 2.79 16 2 Si 1.07 -7.67 12.19 68.60 0.84 -6.83 16 3 C -0.46 2.23 8.65 113.37 0.98 3.21 16 4 C -0.48 1.55 8.65 113.37 0.98 2.53 16 5 C -0.41 3.27 4.45 71.98 0.32 3.59 16 6 C -0.12 0.59 4.59 30.60 0.14 0.74 16 7 C -0.63 3.64 5.46 71.98 0.39 4.04 16 8 S 2.58 9.60 5.17 -56.49 -0.29 9.31 16 9 O -0.97 -11.36 18.09 -118.57 -2.15 -13.50 16 10 O -0.97 -7.60 16.26 -118.57 -1.93 -9.52 16 11 O -0.67 -2.27 10.05 -61.56 -0.62 -2.89 16 12 C 0.06 0.09 4.80 22.50 0.11 0.19 16 13 C -0.06 -0.12 8.61 22.37 0.19 0.07 16 14 C -0.09 0.15 5.39 -19.88 -0.11 0.05 16 15 C -0.09 0.30 2.82 71.24 0.20 0.50 16 16 O -0.55 0.39 12.77 -148.98 -1.90 -1.52 16 17 Si 0.97 -4.53 25.07 68.60 1.72 -2.81 16 18 H -0.24 1.32 7.11 99.48 0.71 2.02 16 19 H -0.27 0.18 7.11 99.48 0.71 0.89 16 20 H -0.24 1.17 7.11 99.48 0.71 1.88 16 21 C -0.08 0.26 8.41 22.30 0.19 0.44 16 22 C -0.08 0.23 6.22 22.30 0.14 0.37 16 23 Br -0.01 0.05 33.70 -20.37 -0.69 -0.63 16 24 C -0.10 0.31 8.20 22.38 0.18 0.49 16 25 H 0.07 -0.32 7.96 -2.39 -0.02 -0.33 16 26 H 0.06 -0.19 7.96 -2.39 -0.02 -0.21 16 27 H 0.07 -0.22 7.79 -2.39 -0.02 -0.24 16 28 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 29 H 0.06 -0.23 7.96 -2.39 -0.02 -0.25 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.07 -0.18 7.79 -2.38 -0.02 -0.19 16 32 H 0.06 -0.16 7.96 -2.38 -0.02 -0.17 16 33 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 34 H 0.09 -0.95 7.96 -2.39 -0.02 -0.97 16 35 H 0.09 -0.91 7.96 -2.39 -0.02 -0.93 16 36 H 0.08 -0.45 7.79 -2.39 -0.02 -0.46 16 37 H 0.09 -0.53 7.79 -2.39 -0.02 -0.54 16 38 H 0.16 -1.65 6.60 -2.39 -0.02 -1.67 16 39 H 0.17 -1.80 8.14 -2.39 -0.02 -1.81 16 40 H 0.15 0.41 8.06 -2.91 -0.02 0.38 16 41 H 0.14 -0.77 7.96 -2.39 -0.02 -0.79 16 42 H 0.39 -2.69 8.70 -74.06 -0.64 -3.34 16 43 H 0.16 -0.97 4.87 -2.91 -0.01 -0.98 16 44 H 0.18 -1.65 7.49 -2.91 -0.02 -1.67 16 Total: 0.00 -20.61 394.19 0.80 -19.81 By element: Atomic # 1 Polarization: -11.53 SS G_CDS: 1.12 Total: -10.41 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 4.70 Total: 19.00 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -6.59 Total: -27.44 kcal Atomic # 14 Polarization: -12.20 SS G_CDS: 2.56 Total: -9.64 kcal Atomic # 16 Polarization: 9.60 SS G_CDS: -0.29 Total: 9.31 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -0.69 Total: -0.63 kcal Total: -20.61 0.80 -19.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_14927650.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.537 kcal (2) G-P(sol) polarization free energy of solvation -20.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds