Wall clock time and date at job start Mon Mar 8 2021 09:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.47080 * 2 1 4 4 C 1.50697 * 109.47317 * 119.99750 * 2 1 3 5 5 C 1.38139 * 119.96264 * 65.29940 * 4 2 1 6 6 C 1.38760 * 119.95939 * 180.27498 * 5 4 2 7 7 O 1.35902 * 120.05076 * 179.72696 * 6 5 4 8 8 S 1.52195 * 114.00041 * 269.72504 * 7 6 5 9 9 O 1.42102 * 104.27539 * 318.92601 * 8 7 6 10 10 O 1.42099 * 104.28061 * 191.06637 * 8 7 6 11 11 C 1.81398 * 104.45026 * 74.99673 * 8 7 6 12 12 H 1.09003 * 112.91195 * 311.25001 * 11 8 7 13 13 C 1.53783 * 113.61496 * 82.50486 * 11 8 7 14 14 C 1.53779 * 87.08230 * 139.98234 * 13 11 8 15 15 H 1.08999 * 113.69109 * 220.00426 * 14 13 11 16 16 O 1.42901 * 113.61584 * 89.11619 * 14 13 11 17 17 C 1.42902 * 113.99925 * 112.50099 * 16 14 13 18 18 C 1.50706 * 109.46976 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00109 * 269.72671 * 18 17 16 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 17 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 C 1.53774 * 87.08181 * 334.56884 * 14 13 11 25 25 C 1.38696 * 119.90210 * 359.45104 * 6 5 4 26 26 C 1.38257 * 119.93245 * 0.25164 * 25 6 5 27 27 Br 1.89099 * 119.98143 * 180.02562 * 26 25 6 28 28 C 1.38267 * 119.97070 * 245.00053 * 4 2 1 29 29 H 0.96705 * 114.00092 * 299.99524 * 1 2 3 30 30 H 1.08994 * 109.47305 * 240.00484 * 2 1 3 31 31 H 1.48497 * 110.00289 * 178.67758 * 3 2 1 32 32 H 1.48492 * 110.00210 * 300.00081 * 3 2 1 33 33 H 1.07999 * 120.02047 * 359.97438 * 5 4 2 34 34 H 1.08999 * 113.61337 * 25.43259 * 13 11 8 35 35 H 1.09005 * 113.61083 * 254.53219 * 13 11 8 36 36 H 1.09000 * 109.46838 * 60.00621 * 17 16 14 37 37 H 1.09000 * 109.47141 * 299.99851 * 17 16 14 38 38 H 1.08004 * 119.99934 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 40 40 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 41 41 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 43 43 H 1.08999 * 113.62136 * 139.98503 * 24 14 13 44 44 H 1.09001 * 113.61459 * 270.80346 * 24 14 13 45 45 H 1.07994 * 120.03598 * 180.27451 * 25 6 5 46 46 H 1.07991 * 119.95056 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6898 -2.0605 1.3946 6 6 2.1475 -2.7133 2.5303 7 8 1.9061 -4.0404 2.6963 8 16 0.6079 -4.3465 3.4292 9 8 0.5580 -3.3818 4.4714 10 8 0.6884 -5.7352 3.7196 11 6 -0.6903 -4.0269 2.2033 12 1 -0.5728 -3.0665 1.7014 13 6 -0.9295 -5.2007 1.2390 14 6 -2.4311 -4.8926 1.3613 15 1 -3.0576 -5.7828 1.4180 16 8 -2.9009 -3.9438 0.4015 17 6 -3.7992 -4.4915 -0.5656 18 6 -4.2291 -3.4087 -1.5217 19 6 -5.3555 -2.6547 -1.2507 20 6 -5.7472 -1.6586 -2.1255 21 6 -5.0179 -1.4228 -3.2759 22 6 -3.8944 -2.1804 -3.5494 23 6 -3.5000 -3.1734 -2.6724 24 6 -2.1125 -4.2750 2.7330 25 6 2.8566 -2.0107 3.4932 26 6 3.1012 -0.6608 3.3217 27 35 4.0685 0.2984 4.6332 28 6 2.6388 -0.0114 2.1910 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5137 -0.8900 31 1 3.5345 1.7704 0.0322 32 1 1.5615 2.4679 -1.2084 33 1 1.1410 -2.6067 0.6417 34 1 -0.6474 -6.1693 1.6517 35 1 -0.5293 -5.0328 0.2391 36 1 -4.6750 -4.8971 -0.0591 37 1 -3.2980 -5.2864 -1.1178 38 1 -5.9273 -2.8412 -0.3536 39 1 -6.6248 -1.0665 -1.9117 40 1 -5.3255 -0.6464 -3.9607 41 1 -3.3243 -1.9960 -4.4479 42 1 -2.6226 -3.7656 -2.8863 43 1 -2.6674 -3.3598 2.9394 44 1 -2.1553 -4.9902 3.5544 45 1 3.2176 -2.5175 4.3758 46 1 2.8304 1.0431 2.0587 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17850310_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:12 Heat of formation + Delta-G solvation = -76.467533 kcal Electronic energy + Delta-G solvation = -35048.189558 eV Core-core repulsion = 30238.490262 eV Total energy + Delta-G solvation = -4809.699295 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.43846 -40.87743 -40.07553 -39.97542 -38.33740 -37.71398 -37.22230 -37.10409 -33.80802 -32.74035 -32.43345 -31.84310 -30.62849 -27.70193 -27.27909 -27.15293 -26.52459 -24.91431 -23.53326 -23.19463 -22.33546 -21.87991 -20.92889 -19.60754 -19.09329 -18.89844 -18.30626 -17.98189 -17.73886 -17.52836 -17.18630 -16.72877 -16.66919 -16.42763 -16.16781 -15.90100 -15.65973 -15.34240 -15.22160 -14.91014 -14.64443 -14.58677 -14.35081 -14.29650 -14.17271 -13.95310 -13.74897 -13.67572 -13.57398 -13.41006 -13.30274 -13.21990 -13.18014 -13.11297 -12.30580 -12.25296 -12.17127 -12.05368 -12.00728 -11.95591 -11.83129 -11.49119 -11.30594 -10.73517 -10.68803 -10.33188 -10.11061 -9.85309 -9.80180 -5.20893 -1.18280 -0.44530 -0.31320 0.26596 0.29235 0.47053 0.86554 1.07824 1.46629 1.81513 1.89835 2.31488 2.44309 2.64993 2.86921 2.95949 3.04592 3.16905 3.28093 3.32599 3.43840 3.49741 3.60808 3.72153 3.78383 3.82444 3.85999 3.98740 4.02315 4.06824 4.19572 4.20620 4.23194 4.25011 4.31687 4.47572 4.49445 4.55019 4.56852 4.62682 4.66127 4.66810 4.70329 4.75178 4.77470 5.01122 5.08593 5.22551 5.50320 5.58340 5.60614 6.02004 6.06777 6.35151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.531 6.531 2 C -0.068 4.068 3 Si 0.682 3.318 4 C -0.095 4.095 5 C -0.089 4.089 6 C 0.077 3.923 7 O -0.659 6.659 8 S 2.590 3.410 9 O -0.944 6.944 10 O -0.919 6.919 11 C -0.638 4.638 12 H 0.161 0.839 13 C -0.131 4.131 14 C 0.079 3.921 15 H 0.089 0.911 16 O -0.353 6.353 17 C 0.102 3.898 18 C -0.094 4.094 19 C -0.098 4.098 20 C -0.123 4.123 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.097 4.097 24 C -0.106 4.106 25 C -0.058 4.058 26 C -0.072 4.072 27 Br -0.017 7.017 28 C -0.071 4.071 29 H 0.382 0.618 30 H 0.123 0.877 31 H -0.250 1.250 32 H -0.246 1.246 33 H 0.152 0.848 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.154 0.846 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.080 2.502 -2.538 4.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.179 4.179 3 Si 0.583 3.417 4 C -0.097 4.097 5 C -0.109 4.109 6 C 0.034 3.966 7 O -0.618 6.618 8 S 2.686 3.314 9 O -0.943 6.943 10 O -0.917 6.917 11 C -0.745 4.745 12 H 0.178 0.822 13 C -0.169 4.169 14 C 0.019 3.981 15 H 0.107 0.893 16 O -0.272 6.272 17 C 0.026 3.974 18 C -0.094 4.094 19 C -0.116 4.116 20 C -0.141 4.141 21 C -0.130 4.130 22 C -0.140 4.140 23 C -0.115 4.115 24 C -0.145 4.145 25 C -0.080 4.080 26 C -0.152 4.152 27 Br 0.069 6.931 28 C -0.091 4.091 29 H 0.229 0.771 30 H 0.140 0.860 31 H -0.175 1.175 32 H -0.171 1.171 33 H 0.170 0.830 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.172 0.828 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -1.629 2.982 -2.471 4.201 hybrid contribution -0.464 -1.083 -0.888 1.475 sum -2.093 1.899 -3.359 4.389 Atomic orbital electron populations 1.86576 1.16156 1.81602 1.49331 1.25110 0.85923 1.10363 0.96479 0.94765 0.81520 0.77381 0.88040 1.20249 0.98710 0.93428 0.97307 1.21357 0.98885 0.94636 0.96033 1.17849 1.04214 0.77561 0.96928 1.85742 1.61384 1.30341 1.84287 1.05712 0.74943 0.75102 0.75612 1.93667 1.84450 1.62226 1.53940 1.93660 1.84019 1.31752 1.82251 1.32192 1.15228 1.10234 1.16871 0.82171 1.23259 0.98179 0.95706 0.99799 1.22805 0.94003 0.92309 0.88961 0.89299 1.87995 1.63275 1.34564 1.41364 1.21444 0.92834 0.93938 0.89232 1.19526 0.96209 0.98324 0.95369 1.21071 0.96330 0.95083 0.99105 1.21188 1.00151 0.98021 0.94722 1.21257 0.95258 0.99214 0.97230 1.21181 0.97167 0.96015 0.99669 1.21054 0.98794 0.97680 0.93951 1.22850 0.90758 1.03716 0.97172 1.21311 0.95270 0.92732 0.98691 1.21574 1.02805 0.94361 0.96421 1.96878 1.71739 1.73110 1.51356 1.21213 0.95742 1.00322 0.91865 0.77053 0.85991 1.17474 1.17062 0.83002 0.86848 0.88689 0.91958 0.92060 0.85920 0.85761 0.85869 0.85850 0.86056 0.87912 0.87699 0.82788 0.83397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.84 12.84 -35.23 -0.45 0.39 16 2 C -0.07 0.14 2.80 36.00 0.10 0.25 16 3 Si 0.68 -1.69 29.80 -169.99 -5.07 -6.76 16 4 C -0.10 0.13 5.35 -104.65 -0.56 -0.43 16 5 C -0.09 0.05 8.15 -39.42 -0.32 -0.27 16 6 C 0.08 0.10 4.79 -39.22 -0.19 -0.09 16 7 O -0.66 -1.27 10.05 -51.76 -0.52 -1.79 16 8 S 2.59 4.99 5.14 -107.50 -0.55 4.44 16 9 O -0.94 -3.71 16.26 -67.04 -1.09 -4.80 16 10 O -0.92 -4.30 17.27 -67.04 -1.16 -5.46 16 11 C -0.64 0.58 3.97 -25.92 -0.10 0.48 16 12 H 0.16 -0.29 6.13 -51.93 -0.32 -0.61 16 13 C -0.13 0.20 7.47 -25.92 -0.19 0.00 16 14 C 0.08 -0.12 4.37 -25.92 -0.11 -0.23 16 15 H 0.09 -0.28 7.87 -51.93 -0.41 -0.69 16 16 O -0.35 -0.10 10.25 -35.23 -0.36 -0.46 16 17 C 0.10 -0.08 5.90 36.01 0.21 0.14 16 18 C -0.09 -0.07 5.51 -104.62 -0.58 -0.64 16 19 C -0.10 -0.05 9.70 -39.58 -0.38 -0.44 16 20 C -0.12 -0.04 10.05 -39.58 -0.40 -0.44 16 21 C -0.11 -0.04 10.05 -39.58 -0.40 -0.44 16 22 C -0.12 -0.07 10.05 -39.58 -0.40 -0.46 16 23 C -0.10 -0.07 9.70 -39.58 -0.38 -0.45 16 24 C -0.11 0.16 7.50 -25.92 -0.19 -0.03 16 25 C -0.06 -0.08 8.79 -39.41 -0.35 -0.43 16 26 C -0.07 -0.02 6.22 -39.54 -0.25 -0.27 16 27 Br -0.02 0.00 33.70 -68.01 -2.29 -2.30 16 28 C -0.07 0.09 8.41 -39.53 -0.33 -0.24 16 29 H 0.38 -1.95 8.70 45.56 0.40 -1.56 16 30 H 0.12 -0.27 7.96 -51.93 -0.41 -0.68 16 31 H -0.25 0.08 7.11 56.52 0.40 0.48 16 32 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 33 H 0.15 -0.32 7.28 -52.49 -0.38 -0.71 16 34 H 0.11 -0.22 7.43 -51.93 -0.39 -0.60 16 35 H 0.09 -0.20 8.14 -51.93 -0.42 -0.63 16 36 H 0.06 -0.12 8.08 -51.93 -0.42 -0.54 16 37 H 0.06 -0.11 8.09 -51.93 -0.42 -0.53 16 38 H 0.12 -0.11 8.06 -52.48 -0.42 -0.54 16 39 H 0.12 -0.17 8.06 -52.49 -0.42 -0.60 16 40 H 0.12 -0.16 8.06 -52.49 -0.42 -0.59 16 41 H 0.12 -0.13 8.06 -52.49 -0.42 -0.55 16 42 H 0.12 -0.08 8.06 -52.49 -0.42 -0.50 16 43 H 0.10 -0.19 8.14 -51.93 -0.42 -0.61 16 44 H 0.10 -0.30 8.10 -51.93 -0.42 -0.72 16 45 H 0.15 0.14 8.06 -52.49 -0.42 -0.28 16 46 H 0.15 -0.49 4.90 -52.49 -0.26 -0.75 16 LS Contribution 417.45 15.07 6.29 6.29 Total: 0.00 -9.79 417.45 -15.63 -25.42 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: -5.61 Total: -10.98 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -4.82 Total: -4.01 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -3.58 Total: -12.11 kcal Atomic # 14 Polarization: -1.69 SS G_CDS: -5.07 Total: -6.76 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -0.55 Total: 4.44 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.29 Total: -2.30 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -9.79 -15.63 -25.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.046 kcal (2) G-P(sol) polarization free energy of solvation -9.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -15.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds