Wall clock time and date at job start Mon Mar 8 2021 09:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86302 * 109.47080 * 2 1 4 4 C 1.50697 * 109.47317 * 119.99750 * 2 1 3 5 5 C 1.38139 * 119.96264 * 65.29940 * 4 2 1 6 6 C 1.38760 * 119.95939 * 180.27498 * 5 4 2 7 7 O 1.35902 * 120.05076 * 179.72696 * 6 5 4 8 8 S 1.52195 * 114.00041 * 269.72504 * 7 6 5 9 9 O 1.42102 * 104.27539 * 318.92601 * 8 7 6 10 10 O 1.42099 * 104.28061 * 191.06637 * 8 7 6 11 11 C 1.81398 * 104.45026 * 74.99673 * 8 7 6 12 12 H 1.09003 * 112.91195 * 311.25001 * 11 8 7 13 13 C 1.53783 * 113.61496 * 82.50486 * 11 8 7 14 14 C 1.53779 * 87.08230 * 139.98234 * 13 11 8 15 15 H 1.08999 * 113.69109 * 220.00426 * 14 13 11 16 16 O 1.42901 * 113.61584 * 89.11619 * 14 13 11 17 17 C 1.42902 * 113.99925 * 112.50099 * 16 14 13 18 18 C 1.50706 * 109.46976 * 179.97438 * 17 16 14 19 19 C 1.38233 * 120.00109 * 269.72671 * 18 17 16 20 20 C 1.38238 * 119.99749 * 179.78525 * 19 18 17 21 21 C 1.38234 * 120.00078 * 0.44989 * 20 19 18 22 22 C 1.38238 * 120.00032 * 359.80374 * 21 20 19 23 23 C 1.38235 * 120.00123 * 359.97438 * 22 21 20 24 24 C 1.53774 * 87.08181 * 334.56884 * 14 13 11 25 25 C 1.38696 * 119.90210 * 359.45104 * 6 5 4 26 26 C 1.38257 * 119.93245 * 0.25164 * 25 6 5 27 27 Br 1.89099 * 119.98143 * 180.02562 * 26 25 6 28 28 C 1.38267 * 119.97070 * 245.00053 * 4 2 1 29 29 H 0.96705 * 114.00092 * 299.99524 * 1 2 3 30 30 H 1.08994 * 109.47305 * 240.00484 * 2 1 3 31 31 H 1.48497 * 110.00289 * 178.67758 * 3 2 1 32 32 H 1.48492 * 110.00210 * 300.00081 * 3 2 1 33 33 H 1.07999 * 120.02047 * 359.97438 * 5 4 2 34 34 H 1.08999 * 113.61337 * 25.43259 * 13 11 8 35 35 H 1.09005 * 113.61083 * 254.53219 * 13 11 8 36 36 H 1.09000 * 109.46838 * 60.00621 * 17 16 14 37 37 H 1.09000 * 109.47141 * 299.99851 * 17 16 14 38 38 H 1.08004 * 119.99934 * 0.02562 * 19 18 17 39 39 H 1.07999 * 119.99925 * 180.27297 * 20 19 18 40 40 H 1.08002 * 120.00276 * 179.83134 * 21 20 19 41 41 H 1.08000 * 120.00524 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.00181 * 179.97438 * 23 22 21 43 43 H 1.08999 * 113.62136 * 139.98503 * 24 14 13 44 44 H 1.09001 * 113.61459 * 270.80346 * 24 14 13 45 45 H 1.07994 * 120.03598 * 180.27451 * 25 6 5 46 46 H 1.07991 * 119.95056 * 0.02562 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 1.6898 -2.0605 1.3946 6 6 2.1475 -2.7133 2.5303 7 8 1.9061 -4.0404 2.6963 8 16 0.6079 -4.3465 3.4292 9 8 0.5580 -3.3818 4.4714 10 8 0.6884 -5.7352 3.7196 11 6 -0.6903 -4.0269 2.2033 12 1 -0.5728 -3.0665 1.7014 13 6 -0.9295 -5.2007 1.2390 14 6 -2.4311 -4.8926 1.3613 15 1 -3.0576 -5.7828 1.4180 16 8 -2.9009 -3.9438 0.4015 17 6 -3.7992 -4.4915 -0.5656 18 6 -4.2291 -3.4087 -1.5217 19 6 -5.3555 -2.6547 -1.2507 20 6 -5.7472 -1.6586 -2.1255 21 6 -5.0179 -1.4228 -3.2759 22 6 -3.8944 -2.1804 -3.5494 23 6 -3.5000 -3.1734 -2.6724 24 6 -2.1125 -4.2750 2.7330 25 6 2.8566 -2.0107 3.4932 26 6 3.1012 -0.6608 3.3217 27 35 4.0685 0.2984 4.6332 28 6 2.6388 -0.0114 2.1910 29 1 -0.3934 0.4417 0.7651 30 1 1.7923 -0.5137 -0.8900 31 1 3.5345 1.7704 0.0322 32 1 1.5615 2.4679 -1.2084 33 1 1.1410 -2.6067 0.6417 34 1 -0.6474 -6.1693 1.6517 35 1 -0.5293 -5.0328 0.2391 36 1 -4.6750 -4.8971 -0.0591 37 1 -3.2980 -5.2864 -1.1178 38 1 -5.9273 -2.8412 -0.3536 39 1 -6.6248 -1.0665 -1.9117 40 1 -5.3255 -0.6464 -3.9607 41 1 -3.3243 -1.9960 -4.4479 42 1 -2.6226 -3.7656 -2.8863 43 1 -2.6674 -3.3598 2.9394 44 1 -2.1553 -4.9902 3.5544 45 1 3.2176 -2.5175 4.3758 46 1 2.8304 1.0431 2.0587 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17850310_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:10 Heat of formation + Delta-G solvation = -74.426134 kcal Electronic energy + Delta-G solvation = -35048.101036 eV Core-core repulsion = 30238.490262 eV Total energy + Delta-G solvation = -4809.610774 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 455.021 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.48057 -40.77910 -40.05064 -39.91973 -38.53792 -37.59975 -37.43077 -37.02186 -33.77382 -32.67862 -32.41937 -31.79849 -30.61289 -27.62758 -27.18473 -27.01941 -26.44898 -24.93015 -23.49181 -23.15419 -22.27754 -21.88330 -20.86670 -19.65922 -19.14968 -18.91562 -18.28921 -17.93144 -17.67787 -17.42109 -17.14015 -16.67965 -16.60936 -16.34981 -16.14034 -15.85330 -15.61432 -15.29199 -15.18517 -14.86735 -14.66431 -14.60622 -14.29181 -14.25479 -14.15449 -13.88819 -13.81371 -13.64616 -13.60528 -13.43233 -13.35954 -13.34512 -13.16125 -13.06098 -12.24925 -12.15978 -12.11322 -12.00329 -11.97694 -11.86997 -11.72550 -11.49502 -11.25931 -10.60892 -10.56633 -10.31083 -10.09808 -9.83059 -9.77143 -5.03836 -1.25586 -0.43197 -0.31754 0.26304 0.32427 0.49229 0.80539 1.22059 1.59970 1.92278 1.94086 2.36819 2.42798 2.61959 2.89871 2.98860 3.12023 3.24296 3.42914 3.47810 3.50528 3.57215 3.69533 3.79653 3.83285 3.91865 3.94254 4.00407 4.14022 4.22424 4.28900 4.34433 4.35255 4.42207 4.46388 4.51877 4.58224 4.61586 4.67379 4.68412 4.74499 4.76225 4.81122 4.84956 4.88222 5.07601 5.14226 5.24494 5.54165 5.61567 5.64179 6.08270 6.19548 6.70281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.066 4.066 3 Si 0.756 3.244 4 C -0.089 4.089 5 C -0.086 4.086 6 C 0.059 3.941 7 O -0.665 6.665 8 S 2.590 3.410 9 O -0.972 6.972 10 O -0.955 6.955 11 C -0.618 4.618 12 H 0.172 0.828 13 C -0.134 4.134 14 C 0.078 3.922 15 H 0.109 0.891 16 O -0.368 6.368 17 C 0.100 3.900 18 C -0.105 4.105 19 C -0.110 4.110 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.135 4.135 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.077 4.077 26 C -0.078 4.078 27 Br -0.019 7.019 28 C -0.066 4.066 29 H 0.397 0.603 30 H 0.126 0.874 31 H -0.277 1.277 32 H -0.290 1.290 33 H 0.169 0.831 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.131 0.869 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.148 0.852 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 2.857 -3.390 5.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.352 6.352 2 C -0.176 4.176 3 Si 0.661 3.339 4 C -0.091 4.091 5 C -0.106 4.106 6 C 0.017 3.983 7 O -0.624 6.624 8 S 2.690 3.310 9 O -0.970 6.970 10 O -0.953 6.953 11 C -0.729 4.729 12 H 0.190 0.810 13 C -0.172 4.172 14 C 0.019 3.981 15 H 0.127 0.873 16 O -0.287 6.287 17 C 0.024 3.976 18 C -0.105 4.105 19 C -0.128 4.128 20 C -0.151 4.151 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.128 4.128 24 C -0.152 4.152 25 C -0.099 4.099 26 C -0.158 4.158 27 Br 0.067 6.933 28 C -0.086 4.086 29 H 0.247 0.753 30 H 0.143 0.857 31 H -0.203 1.203 32 H -0.217 1.217 33 H 0.186 0.814 34 H 0.135 0.865 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.166 0.834 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.537 3.322 -3.269 5.307 hybrid contribution -0.204 -1.133 -0.708 1.352 sum -2.741 2.188 -3.977 5.303 Atomic orbital electron populations 1.86551 1.16145 1.81975 1.50511 1.25161 0.85967 1.10409 0.96105 0.93894 0.78707 0.75364 0.85942 1.20355 0.98192 0.93118 0.97398 1.21556 0.98455 0.94991 0.95582 1.18059 1.05160 0.77355 0.97760 1.85701 1.61627 1.30926 1.84123 1.05600 0.75383 0.73972 0.76013 1.93622 1.85044 1.62461 1.55920 1.93606 1.84826 1.33482 1.83360 1.32070 1.13810 1.11235 1.15818 0.81034 1.23373 0.98414 0.95459 0.99971 1.22875 0.94139 0.92726 0.88367 0.87292 1.87964 1.63541 1.35439 1.41796 1.21519 0.93331 0.93617 0.89112 1.19776 0.96281 0.98744 0.95725 1.21313 0.96626 0.95229 0.99647 1.21452 1.00681 0.98245 0.94762 1.21513 0.95375 0.99668 0.97657 1.21430 0.97488 0.96137 1.00216 1.21278 0.99311 0.98014 0.94201 1.23038 0.89895 1.04438 0.97826 1.21413 0.96067 0.93460 0.98946 1.21628 1.03198 0.94036 0.96975 1.96867 1.71857 1.72895 1.51717 1.21450 0.94807 1.01240 0.91089 0.75262 0.85655 1.20277 1.21719 0.81398 0.86511 0.87787 0.90772 0.91040 0.84845 0.84440 0.84605 0.84756 0.85156 0.87463 0.86550 0.83405 0.81466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 2.49 12.84 -148.98 -1.91 0.58 16 2 C -0.07 0.36 2.80 71.24 0.20 0.56 16 3 Si 0.76 -4.21 29.80 68.60 2.04 -2.17 16 4 C -0.09 0.32 5.35 -19.88 -0.11 0.22 16 5 C -0.09 0.14 8.15 22.37 0.18 0.32 16 6 C 0.06 0.19 4.79 22.50 0.11 0.30 16 7 O -0.66 -3.32 10.05 -61.54 -0.62 -3.94 16 8 S 2.59 12.67 5.14 -56.49 -0.29 12.38 16 9 O -0.97 -9.10 16.26 -118.57 -1.93 -11.03 16 10 O -0.95 -10.35 17.27 -118.57 -2.05 -12.39 16 11 C -0.62 1.40 3.97 31.12 0.12 1.53 16 12 H 0.17 -0.78 6.13 -2.39 -0.01 -0.80 16 13 C -0.13 0.53 7.47 31.12 0.23 0.76 16 14 C 0.08 -0.34 4.37 31.12 0.14 -0.21 16 15 H 0.11 -0.90 7.87 -2.39 -0.02 -0.92 16 16 O -0.37 0.31 10.25 -148.98 -1.53 -1.22 16 17 C 0.10 -0.27 5.90 71.24 0.42 0.15 16 18 C -0.11 -0.09 5.51 -19.86 -0.11 -0.20 16 19 C -0.11 -0.07 9.70 22.27 0.22 0.15 16 20 C -0.13 -0.05 10.05 22.27 0.22 0.17 16 21 C -0.12 -0.07 10.05 22.27 0.22 0.15 16 22 C -0.13 -0.12 10.05 22.27 0.22 0.10 16 23 C -0.11 -0.12 9.70 22.27 0.22 0.10 16 24 C -0.11 0.44 7.50 31.12 0.23 0.67 16 25 C -0.08 -0.31 8.79 22.38 0.20 -0.11 16 26 C -0.08 -0.08 6.22 22.30 0.14 0.06 16 27 Br -0.02 -0.02 33.70 -20.37 -0.69 -0.70 16 28 C -0.07 0.20 8.41 22.30 0.19 0.39 16 29 H 0.40 -4.69 8.70 -74.05 -0.64 -5.33 16 30 H 0.13 -0.71 7.96 -2.39 -0.02 -0.73 16 31 H -0.28 0.30 7.11 99.48 0.71 1.00 16 32 H -0.29 -0.56 7.11 99.48 0.71 0.14 16 33 H 0.17 -0.91 7.28 -2.91 -0.02 -0.93 16 34 H 0.12 -0.51 7.43 -2.39 -0.02 -0.52 16 35 H 0.10 -0.58 8.14 -2.38 -0.02 -0.60 16 36 H 0.07 -0.40 8.08 -2.39 -0.02 -0.42 16 37 H 0.07 -0.36 8.09 -2.39 -0.02 -0.38 16 38 H 0.13 -0.33 8.06 -2.91 -0.02 -0.36 16 39 H 0.14 -0.45 8.06 -2.91 -0.02 -0.48 16 40 H 0.14 -0.41 8.06 -2.91 -0.02 -0.43 16 41 H 0.13 -0.32 8.06 -2.91 -0.02 -0.34 16 42 H 0.13 -0.23 8.06 -2.91 -0.02 -0.26 16 43 H 0.11 -0.49 8.14 -2.39 -0.02 -0.51 16 44 H 0.12 -0.73 8.10 -2.39 -0.02 -0.75 16 45 H 0.15 0.61 8.06 -2.91 -0.02 0.59 16 46 H 0.17 -1.28 4.90 -2.91 -0.01 -1.30 16 Total: 0.00 -23.22 417.45 -3.49 -26.71 By element: Atomic # 1 Polarization: -13.76 SS G_CDS: 0.43 Total: -13.33 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 3.05 Total: 5.11 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -8.03 Total: -28.00 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.04 Total: -2.17 kcal Atomic # 16 Polarization: 12.67 SS G_CDS: -0.29 Total: 12.38 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.70 kcal Total: -23.22 -3.49 -26.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.714 kcal (2) G-P(sol) polarization free energy of solvation -23.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds