Wall clock time and date at job start Mon Mar 8 2021 09:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45208 * 109.46666 * 2 1 4 4 C 1.34232 * 116.99618 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00236 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00079 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.46862 * 300.00390 * 6 4 3 8 8 C 1.53006 * 109.47239 * 59.99547 * 6 4 3 9 9 C 1.52997 * 109.47164 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.46978 * 299.99874 * 9 8 6 11 11 F 1.39902 * 109.46894 * 179.97438 * 10 9 8 12 12 C 1.52993 * 109.47392 * 299.99957 * 10 9 8 13 13 S 1.81400 * 109.47353 * 305.00254 * 12 10 9 14 14 O 1.42098 * 110.54140 * 291.62383 * 13 12 10 15 15 O 1.42100 * 110.54383 * 68.37428 * 13 12 10 16 16 O 1.52197 * 104.44888 * 179.97438 * 13 12 10 17 17 C 1.35904 * 114.00238 * 74.99797 * 16 13 12 18 18 C 1.38692 * 120.04744 * 90.00055 * 17 16 13 19 19 C 1.38254 * 119.93400 * 179.97438 * 18 17 16 20 20 Br 1.89100 * 119.98464 * 179.97438 * 19 18 17 21 21 C 1.38335 * 120.03407 * 0.02562 * 19 18 17 22 22 C 1.38275 * 120.10457 * 0.02562 * 21 19 18 23 23 C 1.50694 * 119.97254 * 179.97438 * 22 21 19 24 24 O 1.42895 * 109.47080 * 245.00036 * 23 22 21 25 25 Si 1.86307 * 109.46952 * 4.99707 * 23 22 21 26 26 C 1.38132 * 120.06003 * 359.69477 * 22 21 19 27 27 C 1.52996 * 109.46891 * 60.00410 * 10 9 8 28 28 C 1.52997 * 109.47466 * 179.97438 * 6 4 3 29 29 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46939 * 299.99720 * 1 2 3 31 31 H 1.08992 * 109.47077 * 59.99823 * 1 2 3 32 32 H 1.08998 * 109.46939 * 240.00280 * 2 1 3 33 33 H 1.08996 * 109.47314 * 119.99461 * 2 1 3 34 34 H 1.09001 * 109.47002 * 60.00070 * 8 6 4 35 35 H 1.09000 * 109.47050 * 300.00336 * 8 6 4 36 36 H 1.09002 * 109.47045 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47375 * 59.99966 * 9 8 6 38 38 H 1.09005 * 109.46770 * 65.00196 * 12 10 9 39 39 H 1.08999 * 109.47318 * 184.99883 * 12 10 9 40 40 H 1.08002 * 120.03390 * 359.95099 * 18 17 16 41 41 H 1.07996 * 119.95315 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.47342 * 124.99630 * 23 22 21 43 43 H 0.96698 * 114.00602 * 59.99908 * 24 23 22 44 44 H 1.48496 * 110.00045 * 180.02562 * 25 23 22 45 45 H 1.48498 * 109.99920 * 301.32096 * 25 23 22 46 46 H 1.08007 * 120.01691 * 180.27508 * 26 22 21 47 47 H 1.09004 * 109.47368 * 179.97438 * 27 10 9 48 48 H 1.09001 * 109.47372 * 59.99964 * 27 10 9 49 49 H 1.09002 * 109.47153 * 59.99773 * 28 6 4 50 50 H 1.09001 * 109.46832 * 299.99964 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3691 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0808 0.5868 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5843 3.4702 -0.8895 8 6 3.4497 3.6838 1.2499 9 6 4.0339 5.0978 1.2501 10 6 5.5619 5.0183 1.2492 11 9 6.0961 6.3113 1.2488 12 6 6.0345 4.2710 2.4977 13 16 5.3528 5.0716 3.9759 14 8 5.9344 6.3549 4.1610 15 8 3.9449 4.8897 4.0371 16 8 5.8884 4.2453 5.1364 17 6 7.2013 4.4636 5.4110 18 6 7.5671 5.4499 6.3149 19 6 8.9035 5.6696 6.5929 20 35 9.4039 7.0144 7.8246 21 6 9.8748 4.9069 5.9697 22 6 9.5119 3.9239 5.0675 23 6 10.5725 3.0952 4.3899 24 8 10.5594 3.3603 2.9858 25 14 12.2432 3.5328 5.0888 26 6 8.1777 3.6970 4.7910 27 6 6.0329 4.2721 -0.0007 28 6 5.4486 2.8575 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.7860 3.1512 2.1395 35 1 2.3611 3.7408 1.2504 36 1 3.6987 5.6293 2.1408 37 1 3.6973 5.6303 0.3606 38 1 5.6919 3.2371 2.4538 39 1 7.1234 4.2913 2.5430 40 1 6.8088 6.0459 6.8009 41 1 10.9184 5.0799 6.1876 42 1 10.3724 2.0376 4.5619 43 1 10.7307 4.2844 2.7583 44 1 13.2981 2.7227 4.4284 45 1 12.5144 4.9790 4.8890 46 1 7.8948 2.9260 4.0895 47 1 7.1214 4.2157 -0.0017 48 1 5.6962 4.8045 -0.8903 49 1 5.7845 2.3257 -0.8903 50 1 5.7846 2.3250 0.8896 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17850310_16464696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:54:10 Heat of formation + Delta-G solvation = -231.148703 kcal Electronic energy + Delta-G solvation = -41093.924635 eV Core-core repulsion = 35562.984876 eV Total energy + Delta-G solvation = -5530.939758 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.043 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -49.05919 -42.56491 -41.83759 -40.18549 -39.71846 -38.43073 -37.90110 -37.60701 -37.33950 -33.95161 -33.60091 -32.62433 -32.48735 -32.23613 -30.70031 -29.38635 -27.39412 -25.49418 -25.06346 -24.32988 -23.70220 -23.28199 -22.00832 -21.71031 -20.55729 -19.58258 -19.12012 -18.90531 -18.74984 -18.42310 -18.07105 -17.84900 -17.64340 -17.33193 -17.28333 -16.81825 -16.52224 -16.31212 -16.09471 -15.78504 -15.46964 -15.28012 -15.15530 -15.07588 -14.67431 -14.62495 -14.55202 -14.33758 -14.24508 -14.02139 -13.85162 -13.78663 -13.66106 -13.42833 -13.32323 -13.27004 -13.23053 -13.15020 -12.92752 -12.91651 -12.81301 -12.57459 -12.44914 -12.41979 -12.13611 -12.03233 -11.93829 -11.75422 -11.53703 -11.52621 -11.36942 -11.27333 -10.97167 -10.44206 -10.17397 -5.17316 -1.36676 -0.52820 -0.40801 0.21740 0.75764 1.01262 1.12814 1.38468 1.56676 1.74811 1.83143 2.22972 2.59400 2.72097 2.93920 2.95061 3.00622 3.11144 3.17451 3.28337 3.35673 3.44561 3.52484 3.55210 3.64762 3.71841 3.81268 3.85558 3.91141 3.93121 3.97075 4.01034 4.03956 4.10661 4.17502 4.26340 4.36492 4.40480 4.45791 4.47418 4.59459 4.62011 4.67655 4.68101 4.69850 4.73612 4.78487 4.80618 4.94024 4.99999 5.03200 5.14003 5.43179 6.09564 6.68944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.466 3.534 5 O -0.505 6.505 6 C -0.087 4.087 7 H 0.119 0.881 8 C -0.108 4.108 9 C -0.170 4.170 10 C 0.142 3.858 11 F -0.190 7.190 12 C -0.693 4.693 13 S 2.589 3.411 14 O -0.930 6.930 15 O -0.909 6.909 16 O -0.658 6.658 17 C 0.071 3.929 18 C -0.055 4.055 19 C -0.071 4.071 20 Br -0.015 7.015 21 C -0.072 4.072 22 C -0.093 4.093 23 C -0.076 4.076 24 O -0.525 6.525 25 Si 0.684 3.316 26 C -0.091 4.091 27 C -0.128 4.128 28 C -0.107 4.107 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.161 0.839 39 H 0.152 0.848 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.129 0.871 43 H 0.380 0.620 44 H -0.248 1.248 45 H -0.252 1.252 46 H 0.152 0.848 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.088 0.912 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -2.329 -0.155 2.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.309 3.691 5 O -0.392 6.392 6 C -0.106 4.106 7 H 0.137 0.863 8 C -0.146 4.146 9 C -0.208 4.208 10 C 0.122 3.878 11 F -0.170 7.170 12 C -0.818 4.818 13 S 2.683 3.317 14 O -0.928 6.928 15 O -0.908 6.908 16 O -0.616 6.616 17 C 0.029 3.971 18 C -0.077 4.077 19 C -0.151 4.151 20 Br 0.071 6.929 21 C -0.092 4.092 22 C -0.095 4.095 23 C -0.186 4.186 24 O -0.331 6.331 25 Si 0.584 3.416 26 C -0.112 4.112 27 C -0.166 4.166 28 C -0.145 4.145 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.179 0.821 39 H 0.170 0.830 40 H 0.173 0.827 41 H 0.168 0.832 42 H 0.147 0.853 43 H 0.228 0.772 44 H -0.173 1.173 45 H -0.176 1.176 46 H 0.170 0.830 47 H 0.109 0.891 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.158 -2.128 0.627 3.095 hybrid contribution -0.394 -0.242 -1.695 1.757 sum 1.764 -2.371 -1.069 3.142 Atomic orbital electron populations 1.21827 0.92241 1.03303 1.03754 1.23105 0.95694 0.79716 1.02763 1.86510 1.24173 1.32859 1.83622 1.23586 0.80859 0.92347 0.72314 1.90692 1.60473 1.43040 1.45023 1.21245 0.96561 0.90368 1.02451 0.86349 1.21527 1.03237 0.93733 0.96098 1.22630 0.91914 0.99479 1.06778 1.20414 0.94059 0.78836 0.94454 1.92999 1.87736 1.38849 1.97416 1.31681 1.15696 1.15735 1.18658 1.05809 0.75661 0.74763 0.75423 1.93704 1.78175 1.38741 1.82216 1.93681 1.27194 1.85369 1.84509 1.85769 1.31209 1.78508 1.66145 1.17883 0.77634 0.99479 1.02108 1.21329 0.96064 0.95190 0.95126 1.21590 0.94328 0.98738 1.00428 1.96890 1.91986 1.48264 1.55716 1.21321 0.99923 0.93535 0.94423 1.20176 0.94401 0.97195 0.97703 1.25102 1.05822 1.03125 0.84504 1.86633 1.93191 1.33032 1.20278 0.94886 0.74986 0.81237 0.90505 1.21351 0.91696 0.98623 0.99516 1.22065 1.02656 0.95662 0.96212 1.21531 0.91757 0.96242 1.04960 0.89987 0.91249 0.91335 0.91076 0.91044 0.90790 0.88204 0.88799 0.87724 0.82145 0.82983 0.82656 0.83195 0.85288 0.77220 1.17253 1.17624 0.83007 0.89123 0.89072 0.89310 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 10.29 37.16 0.38 0.65 16 2 C 0.06 0.00 6.19 37.16 0.23 0.23 16 3 O -0.35 -0.42 10.12 -39.26 -0.40 -0.82 16 4 C 0.47 0.61 7.26 36.00 0.26 0.87 16 5 O -0.50 -1.98 15.73 -18.75 -0.29 -2.27 16 6 C -0.09 0.13 2.63 -91.77 -0.24 -0.11 16 7 H 0.12 -0.39 8.14 -51.93 -0.42 -0.81 16 8 C -0.11 0.12 4.56 -26.73 -0.12 0.00 16 9 C -0.17 0.14 4.62 -26.73 -0.12 0.01 16 10 C 0.14 -0.10 1.11 -90.62 -0.10 -0.20 16 11 F -0.19 -0.33 16.37 2.25 0.04 -0.29 16 12 C -0.69 0.96 4.08 37.15 0.15 1.12 16 13 S 2.59 4.82 4.41 -107.50 -0.47 4.34 16 14 O -0.93 -3.93 15.97 -67.03 -1.07 -5.00 16 15 O -0.91 -3.45 14.90 -67.04 -1.00 -4.44 16 16 O -0.66 -0.91 10.05 -51.76 -0.52 -1.43 16 17 C 0.07 0.05 4.79 -39.22 -0.19 -0.14 16 18 C -0.06 -0.05 8.79 -39.41 -0.35 -0.40 16 19 C -0.07 0.00 6.22 -39.54 -0.25 -0.24 16 20 Br -0.01 0.00 33.70 -68.01 -2.29 -2.29 16 21 C -0.07 0.12 8.41 -39.53 -0.33 -0.21 16 22 C -0.09 0.20 5.35 -104.65 -0.56 -0.36 16 23 C -0.08 0.23 2.80 36.00 0.10 0.33 16 24 O -0.52 0.98 12.84 -35.23 -0.45 0.52 16 25 Si 0.68 -2.10 29.88 -169.99 -5.08 -7.18 16 26 C -0.09 0.13 8.10 -39.43 -0.32 -0.19 16 27 C -0.13 0.31 5.19 -26.71 -0.14 0.17 16 28 C -0.11 0.21 4.22 -26.71 -0.11 0.09 16 29 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 30 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 32 H 0.07 0.00 8.13 -51.93 -0.42 -0.42 16 33 H 0.07 0.01 8.13 -51.93 -0.42 -0.42 16 34 H 0.07 -0.07 6.06 -51.93 -0.31 -0.39 16 35 H 0.10 -0.14 8.11 -51.93 -0.42 -0.56 16 36 H 0.09 0.04 5.40 -51.93 -0.28 -0.24 16 37 H 0.10 -0.27 8.14 -51.93 -0.42 -0.69 16 38 H 0.16 -0.55 4.82 -51.92 -0.25 -0.80 16 39 H 0.15 -0.50 6.62 -51.92 -0.34 -0.84 16 40 H 0.16 0.07 8.06 -52.49 -0.42 -0.35 16 41 H 0.15 -0.51 4.84 -52.49 -0.25 -0.77 16 42 H 0.13 -0.54 7.96 -51.93 -0.41 -0.95 16 43 H 0.38 -1.68 8.70 45.56 0.40 -1.29 16 44 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 45 H -0.25 0.33 7.01 56.52 0.40 0.73 16 46 H 0.15 -0.55 7.52 -52.48 -0.39 -0.95 16 47 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 48 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 49 H 0.09 -0.15 8.10 -51.93 -0.42 -0.57 16 50 H 0.08 -0.15 6.28 -51.93 -0.33 -0.47 16 LS Contribution 428.41 15.07 6.46 6.46 Total: 0.00 -10.14 428.41 -13.24 -23.38 By element: Atomic # 1 Polarization: -6.14 SS G_CDS: -6.45 Total: -12.59 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.70 Total: 1.62 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -3.73 Total: -13.44 kcal Atomic # 9 Polarization: -0.33 SS G_CDS: 0.04 Total: -0.29 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: -5.08 Total: -7.18 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -0.47 Total: 4.34 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -2.29 Total: -2.29 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -10.14 -13.24 -23.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_16464696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.770 kcal (2) G-P(sol) polarization free energy of solvation -10.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds