Wall clock time and date at job start Mon Mar 8 2021 09:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45200 * 109.47542 * 2 1 4 4 C 1.34234 * 117.00236 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99559 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99794 * 180.02562 * 4 3 2 7 7 H 1.08997 * 109.47023 * 300.00035 * 6 4 3 8 8 C 1.52997 * 109.46981 * 60.00422 * 6 4 3 9 9 C 1.52997 * 109.46931 * 179.97438 * 8 6 4 10 10 C 1.53001 * 109.46968 * 299.99801 * 9 8 6 11 11 F 1.39894 * 109.47381 * 300.00185 * 10 9 8 12 12 C 1.53006 * 109.47088 * 180.02562 * 10 9 8 13 13 S 1.81393 * 109.47078 * 60.00113 * 12 10 9 14 14 O 1.42108 * 110.54450 * 68.37491 * 13 12 10 15 15 O 1.42104 * 110.54547 * 291.62485 * 13 12 10 16 16 O 1.52195 * 104.44987 * 180.02562 * 13 12 10 17 17 C 1.35908 * 114.00216 * 75.00054 * 16 13 12 18 18 C 1.38687 * 120.04826 * 270.02325 * 17 16 13 19 19 C 1.38259 * 119.93108 * 179.97438 * 18 17 16 20 20 Br 1.89106 * 119.97799 * 179.97438 * 19 18 17 21 21 C 1.38333 * 120.03732 * 359.97438 * 19 18 17 22 22 C 1.38275 * 120.09936 * 0.02562 * 21 19 18 23 23 C 1.50703 * 119.96264 * 179.97438 * 22 21 19 24 24 O 1.42902 * 109.47004 * 245.00029 * 23 22 21 25 25 Si 1.86297 * 109.47392 * 5.00019 * 23 22 21 26 26 C 1.38120 * 120.06642 * 0.02562 * 22 21 19 27 27 C 1.52997 * 109.47132 * 60.00322 * 10 9 8 28 28 C 1.52997 * 109.46931 * 299.99701 * 27 10 9 29 29 H 1.09000 * 109.46951 * 300.00097 * 1 2 3 30 30 H 1.09003 * 109.46777 * 59.99792 * 1 2 3 31 31 H 1.08995 * 109.47275 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47687 * 239.99798 * 2 1 3 33 33 H 1.09003 * 109.46777 * 120.00208 * 2 1 3 34 34 H 1.09006 * 109.47377 * 299.99922 * 8 6 4 35 35 H 1.09004 * 109.47228 * 60.00062 * 8 6 4 36 36 H 1.09000 * 109.47333 * 180.02562 * 9 8 6 37 37 H 1.08997 * 109.47419 * 59.99622 * 9 8 6 38 38 H 1.09004 * 109.46839 * 300.00275 * 12 10 9 39 39 H 1.08997 * 109.46891 * 180.02562 * 12 10 9 40 40 H 1.07998 * 120.03750 * 359.97438 * 18 17 16 41 41 H 1.08000 * 119.94878 * 180.27391 * 21 19 18 42 42 H 1.09001 * 109.46800 * 124.99985 * 23 22 21 43 43 H 0.96694 * 114.00241 * 60.00249 * 24 23 22 44 44 H 1.48501 * 110.00156 * 179.97438 * 25 23 22 45 45 H 1.48501 * 110.00093 * 301.31743 * 25 23 22 46 46 H 1.08000 * 120.01916 * 179.97438 * 26 22 21 47 47 H 1.09004 * 109.47228 * 59.99460 * 27 10 9 48 48 H 1.09000 * 109.47674 * 179.97438 * 27 10 9 49 49 H 1.09003 * 109.47475 * 179.97438 * 28 27 10 50 50 H 1.09004 * 109.47485 * 300.00015 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3449 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9374 0.0012 7 1 3.5852 3.4697 -0.8888 8 6 3.4489 3.6839 1.2505 9 6 4.0342 5.0975 1.2514 10 6 5.5621 5.0168 1.2522 11 9 5.9925 4.3331 2.3943 12 6 6.1475 6.4304 1.2538 13 16 5.5880 7.3149 2.7354 14 8 6.1711 6.7516 3.9024 15 8 4.1922 7.5724 2.6651 16 8 6.2291 8.6905 2.6213 17 6 5.6396 9.5007 1.7029 18 6 6.0820 9.4975 0.3885 19 6 5.4803 10.3223 -0.5438 20 35 6.0828 10.3196 -2.3363 21 6 4.4377 11.1494 -0.1662 22 6 3.9956 11.1537 1.1440 23 6 2.8600 12.0564 1.5522 24 8 3.3371 13.0314 2.4817 25 14 2.1776 12.9156 0.0466 26 6 4.5944 10.3322 2.0791 27 6 6.0341 4.2703 0.0029 28 6 5.4488 2.8567 0.0019 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.3604 3.7409 1.2502 35 1 3.7846 3.1514 2.1404 36 1 3.6984 5.6292 2.1417 37 1 3.6990 5.6301 0.3615 38 1 5.8122 6.9635 0.3641 39 1 7.2359 6.3729 1.2539 40 1 6.8956 8.8515 0.0935 41 1 3.9658 11.7899 -0.8966 42 1 2.0741 11.4630 2.0193 43 1 4.0397 13.5967 2.1328 44 1 1.0566 13.8084 0.4357 45 1 3.2474 13.7028 -0.6176 46 1 4.2487 10.3365 3.1022 47 1 5.6987 4.8030 -0.8871 48 1 7.1226 4.2132 0.0031 49 1 5.7846 2.3249 -0.8883 50 1 5.7840 2.3239 0.8919 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17850310_16464698.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:54:13 Heat of formation + Delta-G solvation = -234.812605 kcal Electronic energy + Delta-G solvation = -40216.496715 eV Core-core repulsion = 34685.398078 eV Total energy + Delta-G solvation = -5531.098637 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 481.043 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -49.08755 -42.48987 -41.76556 -40.04930 -39.09847 -38.52155 -37.76282 -37.66024 -37.41929 -34.25292 -33.73045 -32.62837 -32.38703 -32.04716 -30.52521 -29.09681 -27.22254 -25.16588 -24.95049 -24.11904 -23.57970 -23.01416 -21.94684 -21.54182 -20.84046 -19.59240 -19.16312 -18.86824 -18.74377 -18.16836 -17.85011 -17.75209 -17.67921 -17.17478 -17.07025 -16.80658 -16.32247 -16.31679 -16.13525 -15.68196 -15.30713 -15.11050 -14.97696 -14.87603 -14.66183 -14.59421 -14.48498 -14.24687 -14.08279 -13.91822 -13.71639 -13.69272 -13.47036 -13.43320 -13.30985 -13.18146 -13.15813 -13.12494 -13.06509 -12.90255 -12.60223 -12.46288 -12.29175 -12.15564 -12.02433 -11.91200 -11.80575 -11.71493 -11.54882 -11.43138 -11.33461 -11.10176 -10.75586 -10.35266 -10.02276 -4.93645 -1.34182 -0.36528 -0.32970 0.28171 0.82114 1.08770 1.22839 1.58114 1.61953 1.95522 1.97989 2.29054 2.65226 2.81318 3.12274 3.16641 3.27269 3.37268 3.40300 3.48284 3.55467 3.59592 3.68668 3.76319 3.81915 3.83305 3.96879 4.02774 4.03920 4.05320 4.07462 4.17130 4.29832 4.31814 4.34682 4.41113 4.55215 4.56523 4.63434 4.67068 4.72556 4.81105 4.82731 4.89853 4.92712 4.94721 4.97259 5.03144 5.11908 5.14520 5.27130 5.27988 5.44502 6.43966 6.65134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.076 4.076 7 H 0.150 0.850 8 C -0.111 4.111 9 C -0.173 4.173 10 C 0.122 3.878 11 F -0.215 7.215 12 C -0.666 4.666 13 S 2.583 3.417 14 O -0.962 6.962 15 O -0.953 6.953 16 O -0.665 6.665 17 C 0.054 3.946 18 C -0.095 4.095 19 C -0.073 4.073 20 Br -0.010 7.010 21 C -0.067 4.067 22 C -0.088 4.088 23 C -0.090 4.090 24 O -0.545 6.545 25 Si 0.769 3.231 26 C -0.064 4.064 27 C -0.122 4.122 28 C -0.111 4.111 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.139 0.861 38 H 0.196 0.804 39 H 0.181 0.819 40 H 0.182 0.818 41 H 0.167 0.833 42 H 0.134 0.866 43 H 0.389 0.611 44 H -0.299 1.299 45 H -0.266 1.266 46 H 0.141 0.859 47 H 0.130 0.870 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.770 3.293 -10.375 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.274 6.274 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.095 4.095 7 H 0.168 0.832 8 C -0.148 4.148 9 C -0.211 4.211 10 C 0.103 3.897 11 F -0.196 7.196 12 C -0.795 4.795 13 S 2.682 3.318 14 O -0.960 6.960 15 O -0.951 6.951 16 O -0.624 6.624 17 C 0.012 3.988 18 C -0.117 4.117 19 C -0.153 4.153 20 Br 0.076 6.924 21 C -0.087 4.087 22 C -0.090 4.090 23 C -0.198 4.198 24 O -0.353 6.353 25 Si 0.672 3.328 26 C -0.084 4.084 27 C -0.160 4.160 28 C -0.148 4.148 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.157 0.843 38 H 0.214 0.786 39 H 0.199 0.801 40 H 0.200 0.800 41 H 0.184 0.816 42 H 0.152 0.848 43 H 0.239 0.761 44 H -0.227 1.227 45 H -0.191 1.191 46 H 0.159 0.841 47 H 0.148 0.852 48 H 0.116 0.884 49 H 0.105 0.895 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.072 3.620 -10.231 11.279 hybrid contribution 1.345 -0.327 1.570 2.093 sum -1.728 3.293 -8.661 9.426 Atomic orbital electron populations 1.21820 0.90584 1.04213 1.03849 1.23238 0.96986 0.79473 1.02315 1.86511 1.24183 1.33302 1.83449 1.24312 0.80596 0.93323 0.71017 1.90676 1.61198 1.44520 1.46734 1.21295 0.96353 0.88494 1.03330 0.83217 1.21472 1.02924 0.94414 0.96015 1.22771 0.91533 0.98993 1.07762 1.20893 0.95483 0.87947 0.85381 1.92948 1.91462 1.81782 1.53404 1.31448 1.16310 1.08170 1.23602 1.05721 0.74367 0.74131 0.77536 1.93640 1.78862 1.76868 1.46614 1.93637 1.32530 1.81476 1.87481 1.85774 1.70306 1.43437 1.62853 1.18101 0.96680 0.97368 0.86646 1.21579 1.00312 1.00295 0.89504 1.21573 0.99705 1.00894 0.93160 1.96928 1.88400 1.98279 1.08800 1.21509 0.94276 0.96907 0.95975 1.20225 0.98349 0.97739 0.92638 1.25426 0.96825 0.92753 1.04835 1.86632 1.58735 1.48950 1.41022 0.94085 0.78305 0.83170 0.77229 1.21438 0.92659 0.92602 1.01746 1.22157 1.03068 0.94477 0.96295 1.21470 0.91927 0.97635 1.03814 0.91334 0.90902 0.88729 0.91275 0.91925 0.88009 0.92593 0.89855 0.84277 0.78611 0.80136 0.80037 0.81583 0.84844 0.76079 1.22691 1.19142 0.84140 0.85182 0.88405 0.89454 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.54 10.29 71.98 0.74 1.28 16 2 C 0.05 0.06 6.19 71.98 0.45 0.51 16 3 O -0.36 -1.06 10.12 -51.45 -0.52 -1.58 16 4 C 0.46 1.94 7.26 71.24 0.52 2.46 16 5 O -0.54 -6.07 15.73 21.96 0.35 -5.73 16 6 C -0.08 0.24 2.63 -11.54 -0.03 0.21 16 7 H 0.15 -1.53 8.14 -2.39 -0.02 -1.55 16 8 C -0.11 0.25 5.01 30.59 0.15 0.40 16 9 C -0.17 0.77 4.52 30.59 0.14 0.91 16 10 C 0.12 -0.43 0.88 -10.79 -0.01 -0.44 16 11 F -0.22 -1.22 15.04 44.97 0.68 -0.55 16 12 C -0.67 5.08 4.75 71.98 0.34 5.42 16 13 S 2.58 7.77 4.51 -56.49 -0.25 7.51 16 14 O -0.96 -12.91 17.60 -118.57 -2.09 -15.00 16 15 O -0.95 -4.24 13.88 -118.57 -1.65 -5.88 16 16 O -0.66 -1.34 10.05 -61.61 -0.62 -1.96 16 17 C 0.05 -0.07 4.80 22.50 0.11 0.03 16 18 C -0.10 0.68 8.20 22.38 0.18 0.86 16 19 C -0.07 0.54 6.22 22.30 0.14 0.68 16 20 Br -0.01 0.08 33.70 -20.37 -0.69 -0.61 16 21 C -0.07 0.50 8.41 22.30 0.19 0.68 16 22 C -0.09 0.40 5.35 -19.88 -0.11 0.30 16 23 C -0.09 0.43 2.80 71.24 0.20 0.63 16 24 O -0.54 0.56 12.83 -148.98 -1.91 -1.35 16 25 Si 0.77 -5.31 29.88 68.60 2.05 -3.26 16 26 C -0.06 0.03 8.68 22.37 0.19 0.22 16 27 C -0.12 1.00 5.00 30.59 0.15 1.15 16 28 C -0.11 0.27 4.37 30.59 0.13 0.40 16 29 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.07 0.09 8.13 -2.39 -0.02 0.07 16 33 H 0.06 0.16 8.13 -2.39 -0.02 0.14 16 34 H 0.10 -0.42 8.11 -2.38 -0.02 -0.44 16 35 H 0.06 0.14 7.80 -2.38 -0.02 0.12 16 36 H 0.08 -0.06 5.46 -2.39 -0.01 -0.07 16 37 H 0.14 -1.68 8.14 -2.39 -0.02 -1.70 16 38 H 0.20 -3.22 6.60 -2.39 -0.02 -3.24 16 39 H 0.18 -2.20 8.14 -2.39 -0.02 -2.22 16 40 H 0.18 -2.46 7.49 -2.91 -0.02 -2.48 16 41 H 0.17 -1.84 4.84 -2.91 -0.01 -1.86 16 42 H 0.13 -0.76 7.96 -2.39 -0.02 -0.78 16 43 H 0.39 -2.86 8.70 -74.06 -0.64 -3.50 16 44 H -0.30 -0.50 7.11 99.48 0.71 0.21 16 45 H -0.27 1.29 7.01 99.48 0.70 1.99 16 46 H 0.14 0.18 8.06 -2.91 -0.02 0.16 16 47 H 0.13 -2.03 8.14 -2.38 -0.02 -2.05 16 48 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.09 -0.24 8.10 -2.39 -0.02 -0.26 16 50 H 0.05 0.20 7.76 -2.38 -0.02 0.18 16 Total: 0.00 -31.30 435.10 -0.78 -32.09 By element: Atomic # 1 Polarization: -19.77 SS G_CDS: 0.38 Total: -19.39 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 3.49 Total: 15.71 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -6.44 Total: -31.50 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.68 Total: -0.55 kcal Atomic # 14 Polarization: -5.31 SS G_CDS: 2.05 Total: -3.26 kcal Atomic # 16 Polarization: 7.77 SS G_CDS: -0.25 Total: 7.51 kcal Atomic # 35 Polarization: 0.08 SS G_CDS: -0.69 Total: -0.61 kcal Total: -31.30 -0.78 -32.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_16464698.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -202.725 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds