Wall clock time and date at job start Mon Mar 8 2021 10:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00136 * 2 1 4 4 C 1.52988 * 112.90775 * 66.09974 * 3 2 1 5 5 F 1.39893 * 109.47739 * 283.54008 * 4 3 2 6 6 F 1.39904 * 109.46988 * 43.53875 * 4 3 2 7 7 F 1.39904 * 109.46960 * 163.53444 * 4 3 2 8 8 C 1.53782 * 113.61045 * 294.85112 * 3 2 1 9 9 C 1.53776 * 87.17480 * 270.92653 * 8 3 2 10 10 H 1.09004 * 113.61597 * 219.98014 * 9 8 3 11 11 C 1.52994 * 113.61768 * 89.07787 * 9 8 3 12 12 S 1.81403 * 109.47414 * 175.00080 * 11 9 8 13 13 O 1.42097 * 110.54328 * 291.62201 * 12 11 9 14 14 O 1.42103 * 110.53985 * 68.37538 * 12 11 9 15 15 O 1.52206 * 104.44894 * 179.97438 * 12 11 9 16 16 C 1.35901 * 113.99640 * 75.00008 * 15 12 11 17 17 C 1.38686 * 120.05139 * 90.00280 * 16 15 12 18 18 C 1.38253 * 119.93956 * 179.97438 * 17 16 15 19 19 Br 1.89096 * 119.98679 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.03052 * 0.02562 * 18 17 16 21 21 C 1.38262 * 120.10093 * 359.97438 * 20 18 17 22 22 C 1.50698 * 119.96535 * 180.02562 * 21 20 18 23 23 O 1.42902 * 109.47474 * 120.00574 * 22 21 20 24 24 Si 1.86301 * 109.47490 * 0.02562 * 22 21 20 25 25 C 1.38130 * 120.07017 * 359.70633 * 21 20 18 26 26 C 1.53787 * 87.08196 * 334.52715 * 9 8 3 27 27 H 1.09004 * 109.47170 * 182.64627 * 1 2 3 28 28 H 1.08993 * 109.47089 * 302.64865 * 1 2 3 29 29 H 1.08997 * 109.47135 * 62.64992 * 1 2 3 30 30 H 1.09005 * 113.61334 * 156.33864 * 8 3 2 31 31 H 1.08994 * 113.61933 * 25.51848 * 8 3 2 32 32 H 1.09002 * 109.47120 * 295.00328 * 11 9 8 33 33 H 1.09005 * 109.47224 * 54.99873 * 11 9 8 34 34 H 1.08004 * 120.03544 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.94495 * 179.97438 * 20 18 17 36 36 H 1.09004 * 109.47311 * 240.00212 * 22 21 20 37 37 H 0.96698 * 113.99317 * 300.00422 * 23 22 21 38 38 H 1.48493 * 110.00402 * 180.02562 * 24 22 21 39 39 H 1.48507 * 109.99685 * 301.32397 * 24 22 21 40 40 H 1.08001 * 120.02145 * 180.27214 * 25 21 20 41 41 H 1.09001 * 113.61548 * 139.98083 * 26 9 8 42 42 H 1.08997 * 113.61467 * 270.88583 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7309 2.0817 1.2884 5 9 0.4146 2.5552 1.2716 6 9 1.9086 1.2371 2.3895 7 9 2.6142 3.1625 1.3824 8 6 1.7198 2.1090 -1.2786 9 6 2.9940 1.4835 -1.8700 10 1 3.5889 2.1802 -2.4607 11 6 2.7487 0.1540 -2.5863 12 16 4.2886 -0.4074 -3.3635 13 8 4.6442 0.4482 -4.4409 14 8 5.2409 -0.7750 -2.3749 15 8 3.9180 -1.7224 -4.0344 16 6 3.1921 -1.5762 -5.1739 17 6 3.8353 -1.4605 -6.3971 18 6 3.0945 -1.3124 -7.5550 19 35 3.9702 -1.1538 -9.2234 20 6 1.7129 -1.2791 -7.4934 21 6 1.0701 -1.3944 -6.2748 22 6 -0.4351 -1.3583 -6.2113 23 8 -0.9177 -2.5803 -5.6492 24 14 -1.1244 -1.1511 -7.9297 25 6 1.8059 -1.5491 -5.1161 26 6 3.4912 1.3214 -0.4238 27 1 -0.3634 -1.0266 0.0474 28 1 -0.3633 0.5544 0.8652 29 1 -0.3633 0.4721 -0.9128 30 1 1.7867 3.1882 -1.1407 31 1 0.8062 1.8033 -1.7884 32 1 2.4132 -0.5910 -1.8648 33 1 1.9839 0.2891 -3.3512 34 1 4.9140 -1.4860 -6.4452 35 1 1.1355 -1.1630 -8.3988 36 1 -0.7527 -0.5218 -5.5888 37 1 -0.6720 -3.3687 -6.1525 38 1 -2.6081 -1.1134 -7.8807 39 1 -0.6048 0.1002 -8.5378 40 1 1.3028 -1.6435 -4.1650 41 1 4.0076 0.3787 -0.2426 42 1 4.0423 2.1853 -0.0522 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_17850310_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:20:19 Heat of formation + Delta-G solvation = -251.613303 kcal Electronic energy + Delta-G solvation = -37746.775754 eV Core-core repulsion = 32034.024204 eV Total energy + Delta-G solvation = -5712.751551 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.993 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -51.23652 -48.78597 -48.66009 -42.53752 -41.64405 -40.14731 -38.40382 -37.82401 -37.54219 -37.27504 -33.89848 -32.54095 -32.00197 -30.64559 -28.61200 -27.98661 -27.38319 -27.03699 -25.09938 -23.76366 -23.25155 -21.73844 -20.84617 -20.04663 -19.57332 -19.50356 -19.30550 -18.97952 -18.79317 -18.27957 -17.77574 -17.46894 -17.11077 -16.67768 -16.62241 -16.45415 -15.95884 -15.80259 -15.70963 -15.58435 -15.45772 -15.26968 -15.14078 -14.95293 -14.86533 -14.78469 -14.76479 -14.58306 -14.48650 -14.36150 -13.81479 -13.52352 -13.48306 -13.41703 -13.30601 -13.26926 -13.24413 -13.13454 -12.57791 -12.43866 -12.37511 -12.29172 -12.11039 -12.09569 -11.63077 -11.54461 -10.99062 -10.87506 -10.39768 -10.18712 -5.28515 -1.30519 -0.53395 -0.40500 0.20479 0.79773 0.98697 1.38698 1.46638 1.72685 1.83023 1.88004 2.31173 2.43041 2.52368 2.68583 2.69945 2.88098 2.94535 3.07918 3.14561 3.24665 3.32609 3.40340 3.41412 3.51742 3.66010 3.73560 3.89359 3.94046 3.98491 4.07361 4.09182 4.16910 4.19847 4.30707 4.37592 4.41145 4.47193 4.52264 4.58065 4.59006 4.65392 4.66137 5.14057 5.50398 6.24096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.332 6.332 3 C 0.041 3.959 4 C 0.438 3.562 5 F -0.181 7.181 6 F -0.172 7.172 7 F -0.174 7.174 8 C -0.137 4.137 9 C -0.092 4.092 10 H 0.111 0.889 11 C -0.643 4.643 12 S 2.590 3.410 13 O -0.943 6.943 14 O -0.912 6.912 15 O -0.657 6.657 16 C 0.075 3.925 17 C -0.057 4.057 18 C -0.071 4.071 19 Br -0.015 7.015 20 C -0.072 4.072 21 C -0.097 4.097 22 C -0.068 4.068 23 O -0.535 6.535 24 Si 0.685 3.315 25 C -0.091 4.091 26 C -0.126 4.126 27 H 0.103 0.897 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.158 0.842 33 H 0.140 0.860 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.123 0.877 37 H 0.384 0.616 38 H -0.246 1.246 39 H -0.250 1.250 40 H 0.153 0.847 41 H 0.110 0.890 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.582 -1.088 -4.391 6.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.250 6.250 3 C -0.002 4.002 4 C 0.383 3.617 5 F -0.162 7.162 6 F -0.153 7.153 7 F -0.155 7.155 8 C -0.175 4.175 9 C -0.111 4.111 10 H 0.129 0.871 11 C -0.769 4.769 12 S 2.685 3.315 13 O -0.942 6.942 14 O -0.911 6.911 15 O -0.616 6.616 16 C 0.032 3.968 17 C -0.079 4.079 18 C -0.151 4.151 19 Br 0.071 6.929 20 C -0.092 4.092 21 C -0.098 4.098 22 C -0.179 4.179 23 O -0.340 6.340 24 Si 0.585 3.415 25 C -0.112 4.112 26 C -0.163 4.163 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.132 0.868 31 H 0.116 0.884 32 H 0.176 0.824 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.166 0.834 36 H 0.140 0.860 37 H 0.231 0.769 38 H -0.171 1.171 39 H -0.174 1.174 40 H 0.171 0.829 41 H 0.128 0.872 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.132 -0.498 -5.182 6.647 hybrid contribution -0.803 0.588 1.737 2.002 sum -4.935 0.090 -3.445 6.019 Atomic orbital electron populations 1.23177 0.79346 1.04579 1.01646 1.88052 1.21242 1.21838 1.93841 1.23974 0.99660 0.86461 0.90066 1.21103 0.74322 0.78731 0.87499 1.93187 1.36911 1.89290 1.96837 1.93232 1.94908 1.70573 1.56633 1.93187 1.68751 1.56992 1.96570 1.23582 0.99230 1.01075 0.93627 1.21701 0.99359 0.94085 0.95967 0.87069 1.30858 1.24035 1.08124 1.13915 1.05718 0.76948 0.73417 0.75418 1.93682 1.81685 1.67436 1.51387 1.93680 1.56184 1.80135 1.61060 1.85784 1.73478 1.59040 1.43284 1.17870 0.89233 1.07089 0.82587 1.21331 1.02015 0.95035 0.89481 1.21595 0.94527 1.06098 0.92891 1.96892 1.78238 1.96743 1.21063 1.21255 0.92779 0.97013 0.98182 1.20242 0.97085 1.00577 0.91908 1.25106 0.90070 0.91040 1.11662 1.86534 1.77352 1.15264 1.54888 0.94643 0.81356 0.87920 0.77556 1.21342 0.90950 0.98002 1.00869 1.23547 0.91662 1.07034 0.94050 0.87820 0.92566 0.92655 0.86802 0.88433 0.82427 0.84151 0.82690 0.83367 0.85966 0.76850 1.17053 1.17408 0.82922 0.87173 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 10.44 101.05 1.05 1.04 16 2 O -0.33 0.15 8.36 -35.23 -0.29 -0.15 16 3 C 0.04 -0.03 0.85 -89.67 -0.08 -0.11 16 4 C 0.44 0.36 2.52 37.15 0.09 0.45 16 5 F -0.18 -0.17 15.24 2.25 0.03 -0.14 16 6 F -0.17 -0.45 17.10 2.25 0.04 -0.41 16 7 F -0.17 -0.15 15.83 2.25 0.04 -0.12 16 8 C -0.14 0.40 6.51 -25.92 -0.17 0.23 16 9 C -0.09 0.22 3.84 -89.81 -0.35 -0.12 16 10 H 0.11 -0.41 8.13 -51.93 -0.42 -0.83 16 11 C -0.64 1.64 5.06 37.15 0.19 1.83 16 12 S 2.59 2.16 5.16 -107.50 -0.55 1.60 16 13 O -0.94 -2.51 16.26 -67.03 -1.09 -3.60 16 14 O -0.91 -3.73 18.09 -67.04 -1.21 -4.95 16 15 O -0.66 -0.49 10.05 -51.75 -0.52 -1.01 16 16 C 0.07 -0.01 4.79 -39.22 -0.19 -0.19 16 17 C -0.06 -0.01 8.79 -39.41 -0.35 -0.36 16 18 C -0.07 0.05 6.22 -39.54 -0.25 -0.19 16 19 Br -0.02 0.01 33.70 -68.01 -2.29 -2.28 16 20 C -0.07 0.18 8.41 -39.53 -0.33 -0.16 16 21 C -0.10 0.28 5.39 -104.65 -0.56 -0.28 16 22 C -0.07 0.25 2.82 36.00 0.10 0.35 16 23 O -0.53 1.72 12.76 -35.23 -0.45 1.27 16 24 Si 0.68 -2.53 29.78 -169.99 -5.06 -7.59 16 25 C -0.09 0.20 8.03 -39.43 -0.32 -0.11 16 26 C -0.13 0.16 6.90 -25.77 -0.18 -0.01 16 27 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 28 H 0.06 -0.08 6.25 -51.93 -0.32 -0.40 16 29 H 0.05 -0.21 6.76 -51.93 -0.35 -0.56 16 30 H 0.11 -0.43 8.06 -51.93 -0.42 -0.85 16 31 H 0.10 -0.40 6.70 -51.93 -0.35 -0.75 16 32 H 0.16 -0.48 6.12 -51.92 -0.32 -0.80 16 33 H 0.14 -0.70 6.63 -51.92 -0.34 -1.04 16 34 H 0.16 -0.02 8.06 -52.48 -0.42 -0.44 16 35 H 0.15 -0.62 4.88 -52.49 -0.26 -0.88 16 36 H 0.12 -0.51 7.96 -51.93 -0.41 -0.92 16 37 H 0.38 -2.59 8.70 45.56 0.40 -2.19 16 38 H -0.25 0.09 7.11 56.52 0.40 0.50 16 39 H -0.25 0.38 7.11 56.52 0.40 0.78 16 40 H 0.15 -0.64 7.53 -52.49 -0.40 -1.04 16 41 H 0.11 -0.08 8.10 -51.93 -0.42 -0.50 16 42 H 0.13 -0.32 7.02 -51.93 -0.36 -0.69 16 LS Contribution 386.14 15.07 5.82 5.82 Total: 0.00 -9.69 386.14 -10.89 -20.58 By element: Atomic # 1 Polarization: -7.36 SS G_CDS: -4.02 Total: -11.38 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.32 Total: 2.35 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -3.57 Total: -8.43 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 0.11 Total: -0.67 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: -5.06 Total: -7.59 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -0.55 Total: 1.60 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -2.29 Total: -2.28 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -9.69 -10.89 -20.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -231.032 kcal (2) G-P(sol) polarization free energy of solvation -9.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds