Wall clock time and date at job start Mon Mar 8 2021 10:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00136 * 2 1 4 4 C 1.52988 * 112.90775 * 66.09974 * 3 2 1 5 5 F 1.39893 * 109.47739 * 283.54008 * 4 3 2 6 6 F 1.39904 * 109.46988 * 43.53875 * 4 3 2 7 7 F 1.39904 * 109.46960 * 163.53444 * 4 3 2 8 8 C 1.53782 * 113.61045 * 294.85112 * 3 2 1 9 9 C 1.53776 * 87.17480 * 270.92653 * 8 3 2 10 10 H 1.09004 * 113.61597 * 219.98014 * 9 8 3 11 11 C 1.52994 * 113.61768 * 89.07787 * 9 8 3 12 12 S 1.81403 * 109.47414 * 175.00080 * 11 9 8 13 13 O 1.42097 * 110.54328 * 291.62201 * 12 11 9 14 14 O 1.42103 * 110.53985 * 68.37538 * 12 11 9 15 15 O 1.52206 * 104.44894 * 179.97438 * 12 11 9 16 16 C 1.35901 * 113.99640 * 75.00008 * 15 12 11 17 17 C 1.38686 * 120.05139 * 90.00280 * 16 15 12 18 18 C 1.38253 * 119.93956 * 179.97438 * 17 16 15 19 19 Br 1.89096 * 119.98679 * 179.97438 * 18 17 16 20 20 C 1.38345 * 120.03052 * 0.02562 * 18 17 16 21 21 C 1.38262 * 120.10093 * 359.97438 * 20 18 17 22 22 C 1.50698 * 119.96535 * 180.02562 * 21 20 18 23 23 O 1.42902 * 109.47474 * 120.00574 * 22 21 20 24 24 Si 1.86301 * 109.47490 * 0.02562 * 22 21 20 25 25 C 1.38130 * 120.07017 * 359.70633 * 21 20 18 26 26 C 1.53787 * 87.08196 * 334.52715 * 9 8 3 27 27 H 1.09004 * 109.47170 * 182.64627 * 1 2 3 28 28 H 1.08993 * 109.47089 * 302.64865 * 1 2 3 29 29 H 1.08997 * 109.47135 * 62.64992 * 1 2 3 30 30 H 1.09005 * 113.61334 * 156.33864 * 8 3 2 31 31 H 1.08994 * 113.61933 * 25.51848 * 8 3 2 32 32 H 1.09002 * 109.47120 * 295.00328 * 11 9 8 33 33 H 1.09005 * 109.47224 * 54.99873 * 11 9 8 34 34 H 1.08004 * 120.03544 * 359.97438 * 17 16 15 35 35 H 1.08000 * 119.94495 * 179.97438 * 20 18 17 36 36 H 1.09004 * 109.47311 * 240.00212 * 22 21 20 37 37 H 0.96698 * 113.99317 * 300.00422 * 23 22 21 38 38 H 1.48493 * 110.00402 * 180.02562 * 24 22 21 39 39 H 1.48507 * 109.99685 * 301.32397 * 24 22 21 40 40 H 1.08001 * 120.02145 * 180.27214 * 25 21 20 41 41 H 1.09001 * 113.61548 * 139.98083 * 26 9 8 42 42 H 1.08997 * 113.61467 * 270.88583 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7309 2.0817 1.2884 5 9 0.4146 2.5552 1.2716 6 9 1.9086 1.2371 2.3895 7 9 2.6142 3.1625 1.3824 8 6 1.7198 2.1090 -1.2786 9 6 2.9940 1.4835 -1.8700 10 1 3.5889 2.1802 -2.4607 11 6 2.7487 0.1540 -2.5863 12 16 4.2886 -0.4074 -3.3635 13 8 4.6442 0.4482 -4.4409 14 8 5.2409 -0.7750 -2.3749 15 8 3.9180 -1.7224 -4.0344 16 6 3.1921 -1.5762 -5.1739 17 6 3.8353 -1.4605 -6.3971 18 6 3.0945 -1.3124 -7.5550 19 35 3.9702 -1.1538 -9.2234 20 6 1.7129 -1.2791 -7.4934 21 6 1.0701 -1.3944 -6.2748 22 6 -0.4351 -1.3583 -6.2113 23 8 -0.9177 -2.5803 -5.6492 24 14 -1.1244 -1.1511 -7.9297 25 6 1.8059 -1.5491 -5.1161 26 6 3.4912 1.3214 -0.4238 27 1 -0.3634 -1.0266 0.0474 28 1 -0.3633 0.5544 0.8652 29 1 -0.3633 0.4721 -0.9128 30 1 1.7867 3.1882 -1.1407 31 1 0.8062 1.8033 -1.7884 32 1 2.4132 -0.5910 -1.8648 33 1 1.9839 0.2891 -3.3512 34 1 4.9140 -1.4860 -6.4452 35 1 1.1355 -1.1630 -8.3988 36 1 -0.7527 -0.5218 -5.5888 37 1 -0.6720 -3.3687 -6.1525 38 1 -2.6081 -1.1134 -7.8807 39 1 -0.6048 0.1002 -8.5378 40 1 1.3028 -1.6435 -4.1650 41 1 4.0076 0.3787 -0.2426 42 1 4.0423 2.1853 -0.0522 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_17850310_17541816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:20:17 Heat of formation + Delta-G solvation = -252.046718 kcal Electronic energy + Delta-G solvation = -37746.794549 eV Core-core repulsion = 32034.024204 eV Total energy + Delta-G solvation = -5712.770345 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 460.993 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -51.28760 -48.82259 -48.75496 -42.46499 -41.47637 -40.01019 -38.51090 -37.56636 -37.44896 -37.31568 -33.74684 -32.40385 -31.87194 -30.52145 -28.40772 -27.90287 -27.16186 -26.82946 -25.00746 -23.66548 -23.08809 -21.67046 -20.72025 -19.99338 -19.59771 -19.50283 -19.28738 -18.92163 -18.68201 -18.16349 -17.59192 -17.29904 -17.00938 -16.52364 -16.50715 -16.23268 -15.87693 -15.70720 -15.63915 -15.54973 -15.39794 -15.20329 -15.10951 -14.94555 -14.90064 -14.73091 -14.68995 -14.50524 -14.35438 -14.25283 -13.81994 -13.53707 -13.40218 -13.31784 -13.28070 -13.19185 -13.06994 -12.93445 -12.36196 -12.24264 -12.19531 -12.18231 -11.99331 -11.93964 -11.48066 -11.45666 -10.84962 -10.62347 -10.24456 -10.06128 -4.99470 -1.27175 -0.39672 -0.28680 0.30578 0.84789 1.25807 1.49493 1.63217 1.93828 2.00800 2.04486 2.35399 2.51548 2.57440 2.73828 2.81027 3.07034 3.15261 3.22468 3.27588 3.40514 3.47607 3.56367 3.59916 3.73769 3.82383 3.92776 4.04329 4.17647 4.27076 4.30633 4.36969 4.41747 4.44887 4.51833 4.57889 4.62852 4.64334 4.72033 4.72903 4.81395 4.85151 4.88011 5.28680 5.68532 6.74153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.344 6.344 3 C 0.037 3.963 4 C 0.432 3.568 5 F -0.182 7.182 6 F -0.188 7.188 7 F -0.176 7.176 8 C -0.127 4.127 9 C -0.096 4.096 10 H 0.125 0.875 11 C -0.623 4.623 12 S 2.588 3.412 13 O -0.969 6.969 14 O -0.958 6.958 15 O -0.663 6.663 16 C 0.056 3.944 17 C -0.076 4.076 18 C -0.079 4.079 19 Br -0.024 7.024 20 C -0.068 4.068 21 C -0.088 4.088 22 C -0.061 4.061 23 O -0.546 6.546 24 Si 0.749 3.251 25 C -0.083 4.083 26 C -0.138 4.138 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.117 0.883 32 H 0.167 0.833 33 H 0.173 0.827 34 H 0.146 0.854 35 H 0.165 0.835 36 H 0.136 0.864 37 H 0.399 0.601 38 H -0.292 1.292 39 H -0.277 1.277 40 H 0.178 0.822 41 H 0.098 0.902 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -0.921 -4.800 8.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 O -0.262 6.262 3 C -0.005 4.005 4 C 0.378 3.622 5 F -0.164 7.164 6 F -0.169 7.169 7 F -0.158 7.158 8 C -0.165 4.165 9 C -0.116 4.116 10 H 0.143 0.857 11 C -0.752 4.752 12 S 2.688 3.312 13 O -0.968 6.968 14 O -0.956 6.956 15 O -0.622 6.622 16 C 0.014 3.986 17 C -0.098 4.098 18 C -0.159 4.159 19 Br 0.062 6.938 20 C -0.088 4.088 21 C -0.089 4.089 22 C -0.172 4.172 23 O -0.354 6.354 24 Si 0.654 3.346 25 C -0.104 4.104 26 C -0.175 4.175 27 H 0.132 0.868 28 H 0.063 0.937 29 H 0.095 0.905 30 H 0.143 0.857 31 H 0.136 0.864 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.164 0.836 35 H 0.182 0.818 36 H 0.153 0.847 37 H 0.249 0.751 38 H -0.219 1.219 39 H -0.203 1.203 40 H 0.195 0.805 41 H 0.117 0.883 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.007 -0.367 -5.611 8.228 hybrid contribution -0.314 0.539 1.868 1.969 sum -6.321 0.172 -3.743 7.348 Atomic orbital electron populations 1.23352 0.78501 1.05414 1.02209 1.88041 1.22243 1.22053 1.93843 1.24117 0.99932 0.86647 0.89832 1.21499 0.74179 0.78715 0.87833 1.93179 1.37022 1.89329 1.96844 1.93194 1.94999 1.71067 1.57673 1.93175 1.68840 1.57167 1.96611 1.23644 0.99546 1.01431 0.91861 1.21810 1.00038 0.94334 0.95412 0.85744 1.30693 1.21694 1.08301 1.14547 1.05586 0.77926 0.72996 0.74724 1.93642 1.82941 1.67910 1.52283 1.93620 1.59112 1.80886 1.61963 1.85751 1.73994 1.58793 1.43710 1.18095 0.90100 1.08343 0.82060 1.21410 1.01996 0.96088 0.90350 1.21617 0.95147 1.06870 0.92239 1.96877 1.78683 1.96816 1.21410 1.21472 0.92164 0.95931 0.99201 1.20341 0.97491 0.99677 0.91397 1.25089 0.89041 0.91579 1.11513 1.86513 1.77419 1.15951 1.55501 0.93838 0.77784 0.86272 0.76693 1.21595 0.89889 0.96692 1.02184 1.23689 0.91705 1.06890 0.95239 0.86775 0.93726 0.90533 0.85695 0.86447 0.81476 0.80948 0.83596 0.81824 0.84731 0.75078 1.21938 1.20333 0.80484 0.88336 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 10.44 113.37 1.18 1.18 16 2 O -0.34 0.65 8.36 -148.98 -1.25 -0.60 16 3 C 0.04 -0.09 0.85 -10.18 -0.01 -0.10 16 4 C 0.43 0.69 2.52 71.98 0.18 0.87 16 5 F -0.18 -0.27 15.24 44.97 0.69 0.41 16 6 F -0.19 -1.13 17.10 44.97 0.77 -0.36 16 7 F -0.18 -0.33 15.83 44.97 0.71 0.38 16 8 C -0.13 1.01 6.51 31.12 0.20 1.21 16 9 C -0.10 0.59 3.84 -10.27 -0.04 0.55 16 10 H 0.12 -1.06 8.13 -2.39 -0.02 -1.08 16 11 C -0.62 4.12 5.06 71.98 0.36 4.48 16 12 S 2.59 6.01 5.16 -56.49 -0.29 5.72 16 13 O -0.97 -6.11 16.26 -118.57 -1.93 -8.04 16 14 O -0.96 -9.67 18.09 -118.57 -2.15 -11.81 16 15 O -0.66 -1.37 10.05 -61.53 -0.62 -1.99 16 16 C 0.06 -0.02 4.79 22.50 0.11 0.09 16 17 C -0.08 -0.09 8.79 22.38 0.20 0.10 16 18 C -0.08 0.11 6.22 22.30 0.14 0.25 16 19 Br -0.02 0.01 33.70 -20.37 -0.69 -0.67 16 20 C -0.07 0.40 8.41 22.30 0.19 0.59 16 21 C -0.09 0.68 5.39 -19.89 -0.11 0.58 16 22 C -0.06 0.60 2.82 71.24 0.20 0.81 16 23 O -0.55 4.96 12.76 -148.98 -1.90 3.06 16 24 Si 0.75 -6.35 29.78 68.60 2.04 -4.31 16 25 C -0.08 0.53 8.03 22.37 0.18 0.71 16 26 C -0.14 0.36 6.90 31.21 0.22 0.57 16 27 H 0.11 -0.95 8.14 -2.39 -0.02 -0.97 16 28 H 0.04 -0.15 6.25 -2.39 -0.01 -0.17 16 29 H 0.08 -0.79 6.76 -2.39 -0.02 -0.81 16 30 H 0.12 -1.23 8.06 -2.38 -0.02 -1.25 16 31 H 0.12 -1.39 6.70 -2.39 -0.02 -1.40 16 32 H 0.17 -1.30 6.12 -2.39 -0.01 -1.31 16 33 H 0.17 -2.27 6.63 -2.39 -0.02 -2.29 16 34 H 0.15 0.29 8.06 -2.91 -0.02 0.26 16 35 H 0.16 -1.59 4.88 -2.91 -0.01 -1.60 16 36 H 0.14 -1.58 7.96 -2.38 -0.02 -1.60 16 37 H 0.40 -6.37 8.70 -74.06 -0.64 -7.01 16 38 H -0.29 0.17 7.11 99.48 0.71 0.88 16 39 H -0.28 1.05 7.11 99.48 0.71 1.76 16 40 H 0.18 -2.07 7.53 -2.91 -0.02 -2.10 16 41 H 0.10 -0.03 8.10 -2.39 -0.02 -0.05 16 42 H 0.13 -0.64 7.02 -2.39 -0.02 -0.66 16 Total: 0.00 -24.63 386.14 -1.08 -25.72 By element: Atomic # 1 Polarization: -19.91 SS G_CDS: 0.52 Total: -19.39 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 3.00 Total: 11.89 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -7.84 Total: -19.39 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 2.17 Total: 0.43 kcal Atomic # 14 Polarization: -6.35 SS G_CDS: 2.04 Total: -4.31 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -0.29 Total: 5.72 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.67 kcal Total: -24.63 -1.08 -25.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_17850310_17541816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.328 kcal (2) G-P(sol) polarization free energy of solvation -24.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds