Wall clock time and date at job start Mon Mar 8 2021 09:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86305 * 109.47377 * 2 1 4 4 C 1.50694 * 109.47418 * 239.99501 * 2 1 3 5 5 C 1.38184 * 120.00337 * 104.51899 * 4 2 1 6 6 C 1.38249 * 120.10508 * 180.02562 * 5 4 2 7 7 C 1.38357 * 120.11275 * 359.95099 * 6 5 4 8 8 Cl 1.73607 * 119.99763 * 180.02562 * 7 6 5 9 9 C 1.38442 * 120.00823 * 359.79309 * 7 6 5 10 10 F 1.35098 * 120.05754 * 180.25089 * 9 7 6 11 11 C 1.38683 * 120.00688 * 284.54425 * 4 2 1 12 12 O 1.35953 * 120.05174 * 359.95263 * 11 4 2 13 13 S 1.52209 * 113.99946 * 269.93084 * 12 11 4 14 14 O 1.42099 * 104.27528 * 167.60919 * 13 12 11 15 15 O 1.42097 * 104.27554 * 39.74750 * 13 12 11 16 16 C 1.81395 * 104.44722 * 283.67779 * 13 12 11 17 17 H 1.08998 * 112.85425 * 54.51565 * 16 13 12 18 18 C 1.53780 * 113.61216 * 185.70976 * 16 13 12 19 19 C 1.53781 * 87.17167 * 140.02589 * 18 16 13 20 20 H 1.08999 * 113.61383 * 220.06105 * 19 18 16 21 21 O 1.42898 * 113.61643 * 89.16088 * 19 18 16 22 22 C 1.42899 * 114.00184 * 150.00212 * 21 19 18 23 23 C 1.50701 * 109.47379 * 180.02562 * 22 21 19 24 24 C 1.38233 * 119.99775 * 269.72792 * 23 22 21 25 25 C 1.38237 * 119.99854 * 179.80560 * 24 23 22 26 26 C 1.38238 * 120.00134 * 0.39911 * 25 24 23 27 27 C 1.38230 * 119.99667 * 359.85016 * 26 25 24 28 28 C 1.38238 * 120.00563 * 359.95911 * 27 26 25 29 29 C 1.53782 * 113.69259 * 283.24514 * 16 13 12 30 30 H 0.96705 * 113.99691 * 60.00103 * 1 2 3 31 31 H 1.08997 * 109.46958 * 119.99615 * 2 1 3 32 32 H 1.48499 * 109.99916 * 59.99282 * 3 2 1 33 33 H 1.48493 * 110.00022 * 181.31663 * 3 2 1 34 34 H 1.07996 * 119.94463 * 0.02562 * 5 4 2 35 35 H 1.07999 * 119.94626 * 179.97438 * 6 5 4 36 36 H 1.09002 * 113.61668 * 254.61366 * 18 16 13 37 37 H 1.08997 * 113.61714 * 25.43374 * 18 16 13 38 38 H 1.09007 * 109.47088 * 299.99665 * 22 21 19 39 39 H 1.08993 * 109.47745 * 59.99421 * 22 21 19 40 40 H 1.08000 * 120.00376 * 359.97438 * 24 23 22 41 41 H 1.08006 * 119.99775 * 180.22417 * 25 24 23 42 42 H 1.07996 * 120.00233 * 179.83514 * 26 25 24 43 43 H 1.08004 * 120.00075 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.00458 * 179.97438 * 28 27 26 45 45 H 1.08996 * 113.61406 * 334.56136 * 29 16 13 46 46 H 1.09005 * 113.61558 * 105.38007 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2303 5 6 2.4446 0.0170 -2.2872 6 6 2.9056 -0.6327 -3.4171 7 6 2.8556 -2.0132 -3.4931 8 17 3.4359 -2.8259 -4.9132 9 6 2.3472 -2.7469 -2.4349 10 9 2.3026 -4.0953 -2.5060 11 6 1.8783 -2.0944 -1.3023 12 8 1.3740 -2.8114 -0.2631 13 16 2.4141 -3.2173 0.7714 14 8 1.6482 -3.6769 1.8766 15 8 3.2565 -2.0787 0.8867 16 6 3.3072 -4.5943 -0.0009 17 1 3.7098 -4.3409 -0.9815 18 6 4.3308 -5.2643 0.9309 19 6 3.8752 -6.6088 0.3394 20 1 3.7953 -7.4062 1.0782 21 8 4.6070 -6.9998 -0.8240 22 6 4.7180 -8.4144 -0.9927 23 6 5.5049 -8.7111 -2.2433 24 6 4.8516 -8.8562 -3.4528 25 6 5.5738 -9.1244 -4.6006 26 6 6.9485 -9.2555 -4.5375 27 6 7.6012 -9.1154 -3.3271 28 6 6.8795 -8.8434 -2.1799 29 6 2.5336 -5.9232 0.0227 30 1 -0.3933 0.4417 -0.7651 31 1 1.7923 -0.5138 0.8900 32 1 1.5615 2.4679 1.2084 33 1 3.5346 1.7702 -0.0321 34 1 2.4856 1.0946 -2.2303 35 1 3.3058 -0.0616 -4.2418 36 1 5.3651 -5.0124 0.6965 37 1 4.0972 -5.1514 1.9895 38 1 5.2298 -8.8440 -0.1314 39 1 3.7223 -8.8495 -1.0778 40 1 3.7772 -8.7575 -3.5015 41 1 5.0637 -9.2342 -5.5462 42 1 7.5124 -9.4676 -5.4337 43 1 8.6752 -9.2182 -3.2776 44 1 7.3894 -8.7343 -1.2341 45 1 1.8078 -5.9916 0.8329 46 1 2.1157 -6.2024 -0.9446 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18323490_15608174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:51:20 Heat of formation + Delta-G solvation = -121.634978 kcal Electronic energy + Delta-G solvation = -38606.226667 eV Core-core repulsion = 33305.132999 eV Total energy + Delta-G solvation = -5301.093668 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 429.062 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -50.61142 -42.59204 -40.86607 -40.01347 -39.87352 -38.71589 -38.20482 -37.65624 -37.41044 -37.12160 -32.76984 -32.72603 -31.85896 -31.77027 -27.70680 -27.37249 -27.12456 -26.58643 -25.08536 -23.55120 -23.50179 -22.39220 -22.32972 -21.24137 -20.05728 -19.60493 -19.31078 -18.82564 -18.51217 -17.86705 -17.69773 -17.42826 -17.30562 -17.10365 -16.71400 -16.62902 -16.44411 -16.10861 -15.89525 -15.75031 -15.58377 -15.35469 -15.01451 -14.81667 -14.55879 -14.34698 -14.26753 -14.17060 -14.11983 -13.95878 -13.80655 -13.76294 -13.69178 -13.58586 -13.49173 -13.28913 -13.24588 -12.72303 -12.38904 -12.29314 -12.23215 -12.15633 -12.09165 -11.94458 -11.83011 -11.39346 -10.68469 -10.67222 -10.37294 -10.16982 -9.89330 -9.83690 -5.12475 -1.44236 -0.63704 -0.52393 0.25834 0.42140 0.42961 0.78838 1.10445 1.63802 1.78453 1.96142 2.14634 2.32475 2.37295 2.45735 2.73807 2.89024 3.05937 3.12186 3.28689 3.32937 3.41489 3.42734 3.59095 3.65172 3.82932 3.86351 3.98816 4.07127 4.08027 4.11838 4.22870 4.26978 4.29407 4.37175 4.37781 4.51438 4.54965 4.57996 4.59024 4.62048 4.68774 4.70526 4.72935 4.74327 5.01418 5.08334 5.16507 5.48252 5.55441 5.58109 6.02072 6.10406 6.66647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.121 4.121 3 Si 0.823 3.177 4 C -0.074 4.074 5 C -0.080 4.080 6 C -0.038 4.038 7 C -0.065 4.065 8 Cl -0.024 7.024 9 C 0.087 3.913 10 F -0.114 7.114 11 C 0.041 3.959 12 O -0.654 6.654 13 S 2.578 3.422 14 O -0.950 6.950 15 O -0.969 6.969 16 C -0.623 4.623 17 H 0.160 0.840 18 C -0.113 4.113 19 C 0.083 3.917 20 H 0.116 0.884 21 O -0.372 6.372 22 C 0.099 3.901 23 C -0.108 4.108 24 C -0.112 4.112 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.111 4.111 29 C -0.132 4.132 30 H 0.401 0.599 31 H 0.090 0.910 32 H -0.293 1.293 33 H -0.265 1.265 34 H 0.204 0.796 35 H 0.206 0.794 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.134 0.866 45 H 0.117 0.883 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.424 2.446 -6.653 7.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.226 4.226 3 Si 0.723 3.277 4 C -0.077 4.077 5 C -0.098 4.098 6 C -0.057 4.057 7 C -0.093 4.093 8 Cl 0.006 6.994 9 C 0.064 3.936 10 F -0.093 7.093 11 C -0.002 4.002 12 O -0.613 6.613 13 S 2.678 3.322 14 O -0.948 6.948 15 O -0.968 6.968 16 C -0.734 4.734 17 H 0.178 0.822 18 C -0.152 4.152 19 C 0.024 3.976 20 H 0.134 0.866 21 O -0.291 6.291 22 C 0.023 3.977 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.129 4.129 29 C -0.170 4.170 30 H 0.252 0.748 31 H 0.107 0.893 32 H -0.221 1.221 33 H -0.191 1.191 34 H 0.220 0.780 35 H 0.223 0.777 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.147 0.853 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.135 0.865 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.664 3.128 -5.411 6.794 hybrid contribution -0.084 -2.146 0.303 2.169 sum 2.580 0.983 -5.108 5.806 Atomic orbital electron populations 1.86577 1.16045 1.82472 1.50606 1.25983 0.86310 1.14463 0.95876 0.94294 0.78042 0.70178 0.85171 1.20862 0.97227 0.90742 0.98832 1.21478 0.95715 1.02456 0.90108 1.21771 0.94180 0.89993 0.99714 1.21072 1.04033 0.94580 0.89643 1.98454 1.86391 1.79166 1.35428 1.17660 1.03218 0.78126 0.94579 1.91582 1.94001 1.27489 1.96195 1.17938 1.05275 0.90714 0.86277 1.85726 1.58371 1.73000 1.44173 1.06032 0.74205 0.76882 0.75050 1.93607 1.68432 1.83400 1.49350 1.93574 1.69920 1.47538 1.85735 1.32131 1.12941 1.14654 1.13659 0.82241 1.23080 0.99434 0.94597 0.98047 1.22872 0.90160 0.96349 0.88211 0.86621 1.87960 1.74095 1.22982 1.44071 1.21553 0.99517 0.81278 0.95340 1.19787 0.94334 1.01791 0.94893 1.21297 1.00637 0.98777 0.92326 1.21454 0.94748 1.00027 0.98973 1.21538 0.94919 0.98894 0.98711 1.21473 1.01070 0.99892 0.92696 1.21322 0.93419 0.98625 0.99515 1.23370 0.98022 0.89989 1.05650 0.74751 0.89291 1.22094 1.19138 0.77992 0.77749 0.87396 0.86187 0.90470 0.91043 0.85295 0.84480 0.84287 0.84271 0.84836 0.86505 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -2.02 12.88 -148.98 -1.92 -3.93 16 2 C -0.12 -0.50 2.24 71.23 0.16 -0.34 16 3 Si 0.82 -2.50 29.93 68.60 2.05 -0.44 16 4 C -0.07 -0.13 4.66 -19.77 -0.09 -0.22 16 5 C -0.08 0.60 8.65 22.26 0.19 0.79 16 6 C -0.04 0.31 9.83 22.30 0.22 0.53 16 7 C -0.07 0.08 6.32 22.35 0.14 0.22 16 8 Cl -0.02 0.01 28.62 -2.72 -0.08 -0.07 16 9 C 0.09 0.33 6.45 22.47 0.14 0.48 16 10 F -0.11 -0.63 13.79 44.97 0.62 -0.01 16 11 C 0.04 0.26 4.77 22.53 0.11 0.37 16 12 O -0.65 -6.88 9.33 -62.11 -0.58 -7.46 16 13 S 2.58 26.25 4.83 -56.49 -0.27 25.98 16 14 O -0.95 -14.87 17.44 -118.57 -2.07 -16.94 16 15 O -0.97 -12.12 14.30 -118.57 -1.70 -13.82 16 16 C -0.62 -2.47 3.16 31.12 0.10 -2.37 16 17 H 0.16 0.60 5.78 -2.39 -0.01 0.59 16 18 C -0.11 -0.04 7.49 31.12 0.23 0.19 16 19 C 0.08 -0.03 4.38 31.18 0.14 0.11 16 20 H 0.12 -0.62 7.87 -2.39 -0.02 -0.64 16 21 O -0.37 -1.15 10.26 -148.98 -1.53 -2.68 16 22 C 0.10 0.00 5.90 71.24 0.42 0.42 16 23 C -0.11 -0.33 5.51 -19.86 -0.11 -0.44 16 24 C -0.11 -0.35 9.70 22.27 0.22 -0.13 16 25 C -0.13 -0.28 10.05 22.27 0.22 -0.06 16 26 C -0.12 -0.18 10.05 22.27 0.22 0.04 16 27 C -0.13 -0.22 10.05 22.27 0.22 0.01 16 28 C -0.11 -0.27 9.70 22.27 0.22 -0.05 16 29 C -0.13 -0.22 7.41 31.18 0.23 0.01 16 30 H 0.40 -3.18 8.70 -74.05 -0.64 -3.82 16 31 H 0.09 0.98 5.49 -2.39 -0.01 0.97 16 32 H -0.29 -1.39 7.11 99.48 0.71 -0.68 16 33 H -0.27 -0.12 7.11 99.48 0.71 0.58 16 34 H 0.20 -3.31 5.14 -2.91 -0.01 -3.33 16 35 H 0.21 -3.33 8.06 -2.91 -0.02 -3.35 16 36 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.12 -0.31 8.10 -2.39 -0.02 -0.33 16 38 H 0.08 -0.25 8.09 -2.38 -0.02 -0.27 16 39 H 0.07 -0.16 8.08 -2.39 -0.02 -0.18 16 40 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 41 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 42 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 43 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 44 H 0.13 -0.10 8.06 -2.91 -0.02 -0.13 16 45 H 0.12 0.07 7.56 -2.39 -0.02 0.05 16 46 H 0.10 0.15 7.97 -2.38 -0.02 0.14 16 Total: 0.00 -29.18 411.16 -2.03 -31.21 By element: Atomic # 1 Polarization: -11.85 SS G_CDS: 0.45 Total: -11.40 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 2.99 Total: -0.45 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -7.79 Total: -44.82 kcal Atomic # 9 Polarization: -0.63 SS G_CDS: 0.62 Total: -0.01 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.05 Total: -0.44 kcal Atomic # 16 Polarization: 26.25 SS G_CDS: -0.27 Total: 25.98 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -29.18 -2.03 -31.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18323490_15608174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.429 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds