Wall clock time and date at job start Mon Mar 8 2021 10:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81398 * 103.00041 * 2 1 4 4 H 1.09007 * 112.85018 * 43.80535 * 3 2 1 5 5 C 1.53781 * 113.61762 * 175.00198 * 3 2 1 6 6 C 1.53774 * 87.08289 * 140.06569 * 5 3 2 7 7 H 1.09001 * 113.61405 * 89.20498 * 6 5 3 8 8 C 1.53004 * 113.61458 * 220.01953 * 6 5 3 9 9 N 1.46503 * 109.47221 * 184.99997 * 8 6 5 10 10 S 1.65595 * 120.00063 * 165.00034 * 9 8 6 11 11 O 1.42104 * 106.40391 * 311.45940 * 10 9 8 12 12 O 1.42102 * 106.40122 * 178.54437 * 10 9 8 13 13 C 1.76194 * 107.21787 * 65.00096 * 10 9 8 14 14 C 1.38241 * 119.99798 * 90.00149 * 13 10 9 15 15 C 1.38236 * 119.99761 * 180.02562 * 14 13 10 16 16 C 1.38234 * 120.00304 * 359.95108 * 15 14 13 17 17 C 1.50699 * 120.00222 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.46964 * 300.00238 * 17 16 15 19 19 Si 1.86301 * 109.47146 * 180.02562 * 17 16 15 20 20 C 1.38237 * 119.99987 * 0.27953 * 16 15 14 21 21 C 1.38236 * 119.99856 * 359.51311 * 20 16 15 22 22 C 1.53778 * 113.69174 * 272.53816 * 3 2 1 23 23 H 1.08995 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46644 * 299.99501 * 1 2 3 25 25 H 1.08997 * 109.47042 * 59.99528 * 1 2 3 26 26 H 1.09005 * 113.60998 * 25.51871 * 5 3 2 27 27 H 1.08996 * 113.61578 * 254.61987 * 5 3 2 28 28 H 1.09001 * 109.46693 * 65.00457 * 8 6 5 29 29 H 1.09002 * 109.46984 * 305.00161 * 8 6 5 30 30 H 0.97000 * 119.99763 * 345.00753 * 9 8 6 31 31 H 1.07998 * 120.00271 * 359.97438 * 14 13 10 32 32 H 1.07998 * 120.00037 * 179.97438 * 15 14 13 33 33 H 1.09002 * 109.46959 * 60.00209 * 17 16 15 34 34 H 0.96698 * 113.99898 * 299.99550 * 18 17 16 35 35 H 1.48504 * 110.00019 * 58.68329 * 19 17 16 36 36 H 1.48503 * 110.00152 * 180.02562 * 19 17 16 37 37 H 1.07992 * 120.00580 * 179.71903 * 20 16 15 38 38 H 1.07998 * 120.00322 * 180.25022 * 21 20 16 39 39 H 1.09001 * 113.61580 * 105.45922 * 22 3 2 40 40 H 1.08995 * 113.61650 * 334.55725 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0520 0.1228 6 6 3.5202 3.1752 -0.9067 7 1 3.2654 4.1359 -0.4591 8 6 4.6472 3.2797 -1.9362 9 7 4.4190 4.4456 -2.7934 10 16 5.6437 5.0260 -3.7450 11 8 6.7858 5.1359 -2.9065 12 8 5.1035 6.1223 -4.4699 13 6 6.0167 3.7793 -4.9329 14 6 5.3573 3.7628 -6.1478 15 6 5.6496 2.7844 -7.0795 16 6 6.6019 1.8231 -6.7969 17 6 6.9210 0.7569 -7.8130 18 8 5.7417 0.0015 -8.0970 19 14 8.2345 -0.3758 -7.1329 20 6 7.2580 1.8368 -5.5802 21 6 6.9688 2.8177 -4.6501 22 6 2.3003 2.3836 -1.4068 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 4.3572 1.2387 -0.2396 27 1 4.0259 2.4119 1.1076 28 1 4.6656 2.3774 -2.5474 29 1 5.6013 3.3889 -1.4206 30 1 3.5506 4.8777 -2.8035 31 1 4.6132 4.5138 -6.3686 32 1 5.1341 2.7712 -8.0285 33 1 7.2824 1.2243 -8.7289 34 1 5.3642 -0.4432 -7.3257 35 1 7.7657 -0.9950 -5.8672 36 1 8.5586 -1.4315 -8.1258 37 1 7.9987 1.0832 -5.3576 38 1 7.4842 2.8309 -3.7011 39 1 1.4450 3.0113 -1.6568 40 1 2.5387 1.6611 -2.1873 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18360574_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:36 Heat of formation + Delta-G solvation = -49.759744 kcal Electronic energy + Delta-G solvation = -23837.703840 eV Core-core repulsion = 20259.212206 eV Total energy + Delta-G solvation = -3578.491634 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78076 -40.31000 -38.26237 -37.91724 -36.87443 -35.86383 -33.10373 -32.27816 -30.02963 -28.92478 -27.32219 -26.90011 -24.30981 -24.04828 -23.07309 -21.09096 -20.42979 -19.30166 -18.71550 -18.33331 -17.85168 -17.16092 -16.94615 -16.63061 -16.49007 -16.19454 -15.92769 -15.53318 -15.38322 -15.26499 -14.89352 -14.57547 -14.49396 -14.30404 -13.99784 -13.81529 -13.72677 -13.66319 -13.31392 -13.17888 -13.08876 -13.01627 -12.72771 -12.55847 -12.04865 -11.93274 -11.82709 -11.76503 -11.50815 -10.89060 -10.87189 -10.68401 -10.45805 -10.21606 -8.71246 -5.08935 -0.74254 -0.40521 0.11278 0.67259 1.09930 1.45991 1.51992 1.82742 1.85181 2.27571 2.70910 3.14828 3.20335 3.22908 3.26420 3.37484 3.44426 3.56738 3.68802 3.72476 3.89136 4.07962 4.12086 4.12811 4.14850 4.22760 4.30693 4.32042 4.46733 4.52247 4.55972 4.60210 4.64534 4.70123 4.73531 4.81127 4.86963 4.89992 4.91071 5.16101 5.20012 5.61483 5.79774 6.20046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.256 6.256 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.103 4.103 6 C -0.114 4.114 7 H 0.105 0.895 8 C 0.125 3.875 9 N -1.115 6.115 10 S 2.695 3.305 11 O -0.952 6.952 12 O -0.955 6.955 13 C -0.675 4.675 14 C -0.017 4.017 15 C -0.114 4.114 16 C -0.061 4.061 17 C -0.085 4.085 18 O -0.525 6.525 19 Si 0.687 3.313 20 C -0.138 4.138 21 C -0.016 4.016 22 C -0.125 4.125 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.420 0.580 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.377 0.623 35 H -0.257 1.257 36 H -0.253 1.253 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.074 0.926 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.350 -1.694 1.396 2.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.027 6.027 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.143 4.143 6 C -0.135 4.135 7 H 0.124 0.876 8 C -0.001 4.001 9 N -0.876 5.876 10 S 2.784 3.216 11 O -0.941 6.941 12 O -0.945 6.945 13 C -0.761 4.761 14 C -0.036 4.036 15 C -0.133 4.133 16 C -0.062 4.062 17 C -0.194 4.194 18 O -0.332 6.332 19 Si 0.587 3.413 20 C -0.156 4.156 21 C -0.035 4.035 22 C -0.165 4.165 23 H 0.119 0.881 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.255 0.745 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.143 0.857 34 H 0.225 0.775 35 H -0.181 1.181 36 H -0.178 1.178 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.093 0.907 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.208 -2.506 1.124 2.754 hybrid contribution -2.587 0.162 -0.153 2.597 sum -2.379 -2.344 0.971 3.478 Atomic orbital electron populations 1.23371 0.94061 1.06624 1.04975 1.86949 1.07664 1.10461 1.97637 1.24684 1.01122 0.94223 1.01255 0.87555 1.22810 0.93338 0.97926 1.00182 1.22725 0.95361 0.99087 0.96376 0.87642 1.21377 0.99694 0.87218 0.91802 1.55507 1.29977 1.44212 1.57888 1.01909 0.73207 0.73205 0.73251 1.93612 1.49176 1.85285 1.66072 1.93621 1.78971 1.49057 1.72854 1.31007 1.10060 1.20215 1.14837 1.21000 0.95477 0.96160 0.90944 1.21190 0.97805 0.94054 1.00241 1.20694 0.94935 0.95873 0.94687 1.25206 0.95388 0.96325 1.02492 1.86630 1.41429 1.67002 1.38106 0.94869 0.85235 0.81796 0.79395 1.21168 1.00754 0.99948 0.93766 1.20920 0.92549 0.90672 0.99355 1.23429 0.98343 0.99088 0.95604 0.88085 0.90455 0.90421 0.88640 0.89713 0.91246 0.89541 0.74474 0.83907 0.84500 0.85705 0.77484 1.18124 1.17764 0.84506 0.83674 0.90729 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.19 10.76 101.05 1.09 1.28 16 2 S -0.26 -0.06 22.18 -107.50 -2.38 -2.44 16 3 C -0.08 0.17 4.27 -25.92 -0.11 0.06 16 4 H 0.11 -0.25 8.14 -51.92 -0.42 -0.68 16 5 C -0.10 0.28 7.23 -25.92 -0.19 0.09 16 6 C -0.11 0.40 3.78 -89.81 -0.34 0.06 16 7 H 0.11 -0.41 8.14 -51.93 -0.42 -0.84 16 8 C 0.13 -0.39 6.06 -4.04 -0.02 -0.41 16 9 N -1.12 2.70 6.00 -10.61 -0.06 2.63 16 10 S 2.70 1.50 5.74 -107.50 -0.62 0.89 16 11 O -0.95 -3.13 16.75 -57.17 -0.96 -4.08 16 12 O -0.95 -3.39 17.28 -57.17 -0.99 -4.37 16 13 C -0.67 0.04 5.95 -39.58 -0.24 -0.20 16 14 C -0.02 0.00 9.52 -39.58 -0.38 -0.37 16 15 C -0.11 0.04 9.61 -39.58 -0.38 -0.34 16 16 C -0.06 0.05 5.39 -104.62 -0.56 -0.51 16 17 C -0.08 0.11 2.82 36.01 0.10 0.21 16 18 O -0.53 -0.02 12.77 -35.23 -0.45 -0.47 16 19 Si 0.69 -1.31 29.79 -169.99 -5.06 -6.38 16 20 C -0.14 0.18 8.67 -39.58 -0.34 -0.17 16 21 C -0.02 0.01 9.52 -39.58 -0.38 -0.36 16 22 C -0.12 0.38 7.22 -25.92 -0.19 0.19 16 23 H 0.10 -0.19 8.14 -51.93 -0.42 -0.62 16 24 H 0.08 -0.16 8.14 -51.92 -0.42 -0.59 16 25 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 26 H 0.10 -0.24 8.06 -51.93 -0.42 -0.65 16 27 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 28 H 0.07 -0.27 7.84 -51.93 -0.41 -0.68 16 29 H 0.09 -0.26 7.75 -51.93 -0.40 -0.66 16 30 H 0.42 -1.65 8.65 -34.47 -0.30 -1.95 16 31 H 0.14 -0.17 7.62 -52.49 -0.40 -0.57 16 32 H 0.14 -0.16 8.06 -52.49 -0.42 -0.59 16 33 H 0.13 -0.25 7.96 -51.93 -0.41 -0.67 16 34 H 0.38 -1.05 8.70 45.56 0.40 -0.65 16 35 H -0.26 0.05 7.11 56.52 0.40 0.45 16 36 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 37 H 0.14 -0.45 4.88 -52.49 -0.26 -0.71 16 38 H 0.15 -0.34 7.62 -52.49 -0.40 -0.74 16 39 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 40 H 0.10 -0.24 7.86 -51.93 -0.41 -0.65 16 LS Contribution 357.52 15.07 5.39 5.39 Total: 0.00 -9.37 357.52 -12.66 -22.03 By element: Atomic # 1 Polarization: -7.13 SS G_CDS: -5.59 Total: -12.71 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.94 Total: -0.47 kcal Atomic # 7 Polarization: 2.70 SS G_CDS: -0.06 Total: 2.63 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -2.40 Total: -8.93 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.06 Total: -6.38 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -3.00 Total: -1.56 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -9.37 -12.66 -22.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.733 kcal (2) G-P(sol) polarization free energy of solvation -9.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds