Wall clock time and date at job start Mon Mar 8 2021 10:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81398 * 103.00041 * 2 1 4 4 H 1.09007 * 112.85018 * 43.80535 * 3 2 1 5 5 C 1.53781 * 113.61762 * 175.00198 * 3 2 1 6 6 C 1.53774 * 87.08289 * 140.06569 * 5 3 2 7 7 H 1.09001 * 113.61405 * 89.20498 * 6 5 3 8 8 C 1.53004 * 113.61458 * 220.01953 * 6 5 3 9 9 N 1.46503 * 109.47221 * 184.99997 * 8 6 5 10 10 S 1.65595 * 120.00063 * 165.00034 * 9 8 6 11 11 O 1.42104 * 106.40391 * 311.45940 * 10 9 8 12 12 O 1.42102 * 106.40122 * 178.54437 * 10 9 8 13 13 C 1.76194 * 107.21787 * 65.00096 * 10 9 8 14 14 C 1.38241 * 119.99798 * 90.00149 * 13 10 9 15 15 C 1.38236 * 119.99761 * 180.02562 * 14 13 10 16 16 C 1.38234 * 120.00304 * 359.95108 * 15 14 13 17 17 C 1.50699 * 120.00222 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.46964 * 300.00238 * 17 16 15 19 19 Si 1.86301 * 109.47146 * 180.02562 * 17 16 15 20 20 C 1.38237 * 119.99987 * 0.27953 * 16 15 14 21 21 C 1.38236 * 119.99856 * 359.51311 * 20 16 15 22 22 C 1.53778 * 113.69174 * 272.53816 * 3 2 1 23 23 H 1.08995 * 109.47270 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46644 * 299.99501 * 1 2 3 25 25 H 1.08997 * 109.47042 * 59.99528 * 1 2 3 26 26 H 1.09005 * 113.60998 * 25.51871 * 5 3 2 27 27 H 1.08996 * 113.61578 * 254.61987 * 5 3 2 28 28 H 1.09001 * 109.46693 * 65.00457 * 8 6 5 29 29 H 1.09002 * 109.46984 * 305.00161 * 8 6 5 30 30 H 0.97000 * 119.99763 * 345.00753 * 9 8 6 31 31 H 1.07998 * 120.00271 * 359.97438 * 14 13 10 32 32 H 1.07998 * 120.00037 * 179.97438 * 15 14 13 33 33 H 1.09002 * 109.46959 * 60.00209 * 17 16 15 34 34 H 0.96698 * 113.99898 * 299.99550 * 18 17 16 35 35 H 1.48504 * 110.00019 * 58.68329 * 19 17 16 36 36 H 1.48503 * 110.00152 * 180.02562 * 19 17 16 37 37 H 1.07992 * 120.00580 * 179.71903 * 20 16 15 38 38 H 1.07998 * 120.00322 * 180.25022 * 21 20 16 39 39 H 1.09001 * 113.61580 * 105.45922 * 22 3 2 40 40 H 1.08995 * 113.61650 * 334.55725 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 0.6953 5 6 3.7283 2.0520 0.1228 6 6 3.5202 3.1752 -0.9067 7 1 3.2654 4.1359 -0.4591 8 6 4.6472 3.2797 -1.9362 9 7 4.4190 4.4456 -2.7934 10 16 5.6437 5.0260 -3.7450 11 8 6.7858 5.1359 -2.9065 12 8 5.1035 6.1223 -4.4699 13 6 6.0167 3.7793 -4.9329 14 6 5.3573 3.7628 -6.1478 15 6 5.6496 2.7844 -7.0795 16 6 6.6019 1.8231 -6.7969 17 6 6.9210 0.7569 -7.8130 18 8 5.7417 0.0015 -8.0970 19 14 8.2345 -0.3758 -7.1329 20 6 7.2580 1.8368 -5.5802 21 6 6.9688 2.8177 -4.6501 22 6 2.3003 2.3836 -1.4068 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 4.3572 1.2387 -0.2396 27 1 4.0259 2.4119 1.1076 28 1 4.6656 2.3774 -2.5474 29 1 5.6013 3.3889 -1.4206 30 1 3.5506 4.8777 -2.8035 31 1 4.6132 4.5138 -6.3686 32 1 5.1341 2.7712 -8.0285 33 1 7.2824 1.2243 -8.7289 34 1 5.3642 -0.4432 -7.3257 35 1 7.7657 -0.9950 -5.8672 36 1 8.5586 -1.4315 -8.1258 37 1 7.9987 1.0832 -5.3576 38 1 7.4842 2.8309 -3.7011 39 1 1.4450 3.0113 -1.6568 40 1 2.5387 1.6611 -2.1873 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18360574_13421422.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:35 Heat of formation + Delta-G solvation = -50.595291 kcal Electronic energy + Delta-G solvation = -23837.740072 eV Core-core repulsion = 20259.212206 eV Total energy + Delta-G solvation = -3578.527866 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.079 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69926 -40.09764 -38.40781 -37.85913 -37.02836 -35.71578 -33.04191 -32.19435 -29.89165 -28.74413 -27.24978 -26.67130 -24.18215 -23.90112 -23.00902 -20.94123 -20.34450 -19.24955 -18.68202 -18.29763 -17.79871 -17.12424 -16.80769 -16.52303 -16.38981 -16.10396 -15.84625 -15.49025 -15.28293 -15.11289 -14.80540 -14.51593 -14.37086 -14.17834 -13.92992 -13.79877 -13.53799 -13.44118 -13.33587 -13.30128 -13.22027 -12.92129 -12.67370 -12.53883 -11.93798 -11.84648 -11.77243 -11.57442 -11.30692 -10.80779 -10.77552 -10.51899 -10.38565 -10.14150 -8.70424 -4.95942 -0.73999 -0.37813 0.19062 0.78744 1.21900 1.55428 1.64028 1.89742 1.92470 2.32999 2.70690 3.21465 3.29989 3.42547 3.47679 3.47700 3.66991 3.74881 3.82443 3.84651 4.10943 4.19441 4.28455 4.30067 4.31102 4.39461 4.43056 4.50909 4.61871 4.70298 4.79887 4.83652 4.84203 4.84781 4.87175 4.95039 4.98455 5.04680 5.11922 5.24346 5.44639 5.70007 6.03617 6.39095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.313 6.313 3 C -0.077 4.077 4 H 0.112 0.888 5 C -0.104 4.104 6 C -0.104 4.104 7 H 0.114 0.886 8 C 0.120 3.880 9 N -1.104 6.104 10 S 2.712 3.288 11 O -0.981 6.981 12 O -0.988 6.988 13 C -0.678 4.678 14 C -0.027 4.027 15 C -0.123 4.123 16 C -0.062 4.062 17 C -0.090 4.090 18 O -0.544 6.544 19 Si 0.764 3.236 20 C -0.140 4.140 21 C -0.023 4.023 22 C -0.120 4.120 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.429 0.571 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.132 0.868 34 H 0.388 0.612 35 H -0.275 1.275 36 H -0.302 1.302 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.082 0.918 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 -1.625 1.669 2.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.085 6.085 3 C -0.206 4.206 4 H 0.130 0.870 5 C -0.144 4.144 6 C -0.126 4.126 7 H 0.132 0.868 8 C -0.006 4.006 9 N -0.867 5.867 10 S 2.803 3.197 11 O -0.971 6.971 12 O -0.979 6.979 13 C -0.766 4.766 14 C -0.046 4.046 15 C -0.142 4.142 16 C -0.063 4.063 17 C -0.199 4.199 18 O -0.352 6.352 19 Si 0.668 3.332 20 C -0.158 4.158 21 C -0.042 4.042 22 C -0.160 4.160 23 H 0.120 0.880 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.266 0.734 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.237 0.763 35 H -0.201 1.201 36 H -0.230 1.230 37 H 0.174 0.826 38 H 0.177 0.823 39 H 0.101 0.899 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.063 -2.399 1.418 2.787 hybrid contribution -2.575 0.062 -0.254 2.588 sum -2.513 -2.337 1.164 3.624 Atomic orbital electron populations 1.23366 0.92103 1.06951 1.05611 1.87115 1.10050 1.13500 1.97786 1.24770 1.01566 0.92076 1.02141 0.87023 1.22842 0.92837 0.98046 1.00638 1.22662 0.94857 0.99160 0.95878 0.86782 1.21530 0.99973 0.87153 0.91975 1.55219 1.29697 1.44446 1.57366 1.01105 0.72823 0.72847 0.72899 1.93570 1.50721 1.85921 1.66885 1.93571 1.79495 1.51137 1.73664 1.30863 1.10743 1.20265 1.14694 1.21141 0.95855 0.96534 0.91077 1.21323 0.98155 0.94194 1.00483 1.20780 0.94810 0.95753 0.94952 1.25381 0.95205 0.96418 1.02899 1.86600 1.42027 1.67299 1.39249 0.93999 0.83470 0.79354 0.76358 1.21401 1.00897 1.00156 0.93345 1.21181 0.92344 0.90490 1.00158 1.23395 0.98831 0.98936 0.94850 0.87969 0.89843 0.89702 0.88987 0.89296 0.90238 0.89434 0.73433 0.83388 0.84015 0.85036 0.76267 1.20100 1.22962 0.82579 0.82271 0.89912 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.37 10.76 113.37 1.22 1.58 16 2 S -0.31 -0.29 22.18 -56.49 -1.25 -1.54 16 3 C -0.08 0.33 4.27 31.12 0.13 0.47 16 4 H 0.11 -0.60 8.14 -2.38 -0.02 -0.62 16 5 C -0.10 0.61 7.23 31.12 0.22 0.83 16 6 C -0.10 0.81 3.78 -10.27 -0.04 0.77 16 7 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 8 C 0.12 -0.81 6.06 86.38 0.52 -0.29 16 9 N -1.10 5.69 6.00 -187.48 -1.12 4.56 16 10 S 2.71 3.94 5.74 -56.49 -0.32 3.61 16 11 O -0.98 -6.80 16.75 -128.00 -2.14 -8.95 16 12 O -0.99 -7.76 17.28 -128.00 -2.21 -9.98 16 13 C -0.68 0.08 5.95 22.27 0.13 0.21 16 14 C -0.03 0.00 9.52 22.27 0.21 0.21 16 15 C -0.12 0.10 9.61 22.27 0.21 0.31 16 16 C -0.06 0.14 5.39 -19.87 -0.11 0.03 16 17 C -0.09 0.28 2.82 71.24 0.20 0.48 16 18 O -0.54 0.05 12.77 -148.98 -1.90 -1.86 16 19 Si 0.76 -3.17 29.79 68.60 2.04 -1.13 16 20 C -0.14 0.48 8.67 22.27 0.19 0.68 16 21 C -0.02 0.05 9.52 22.27 0.21 0.26 16 22 C -0.12 0.81 7.22 31.12 0.22 1.04 16 23 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 24 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 25 H 0.08 -0.41 8.14 -2.39 -0.02 -0.42 16 26 H 0.09 -0.45 8.06 -2.38 -0.02 -0.47 16 27 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.08 -0.68 7.84 -2.39 -0.02 -0.70 16 29 H 0.09 -0.57 7.75 -2.39 -0.02 -0.59 16 30 H 0.43 -3.57 8.65 -96.75 -0.84 -4.41 16 31 H 0.15 -0.28 7.62 -2.91 -0.02 -0.30 16 32 H 0.14 -0.33 8.06 -2.91 -0.02 -0.35 16 33 H 0.13 -0.60 7.96 -2.39 -0.02 -0.62 16 34 H 0.39 -2.22 8.70 -74.06 -0.64 -2.87 16 35 H -0.27 0.30 7.11 99.48 0.71 1.01 16 36 H -0.30 -1.23 7.11 99.48 0.71 -0.52 16 37 H 0.16 -1.25 4.88 -2.91 -0.01 -1.26 16 38 H 0.16 -0.86 7.62 -2.91 -0.02 -0.88 16 39 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H 0.09 -0.49 7.86 -2.39 -0.02 -0.51 16 Total: 0.00 -21.41 357.52 -3.95 -25.36 By element: Atomic # 1 Polarization: -16.30 SS G_CDS: -0.38 Total: -16.68 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 3.34 Total: 6.59 kcal Atomic # 7 Polarization: 5.69 SS G_CDS: -1.12 Total: 4.56 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -6.26 Total: -20.78 kcal Atomic # 14 Polarization: -3.17 SS G_CDS: 2.04 Total: -1.13 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.58 Total: 2.08 kcal Total: -21.41 -3.95 -25.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_13421422.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.232 kcal (2) G-P(sol) polarization free energy of solvation -21.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds