Wall clock time and date at job start Mon Mar 8 2021 10:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.08995 * 112.85048 * 316.19650 * 3 2 1 5 5 C 1.53783 * 113.61032 * 87.50217 * 3 2 1 6 6 C 1.53786 * 87.07879 * 139.98017 * 5 3 2 7 7 H 1.09002 * 113.61184 * 89.11275 * 6 5 3 8 8 C 1.52996 * 113.69454 * 220.00632 * 6 5 3 9 9 N 1.46498 * 109.47199 * 272.53780 * 8 6 5 10 10 S 1.65596 * 120.00362 * 164.99769 * 9 8 6 11 11 O 1.42098 * 106.40699 * 178.54047 * 10 9 8 12 12 O 1.42101 * 106.40218 * 311.45784 * 10 9 8 13 13 C 1.76195 * 107.21908 * 64.99584 * 10 9 8 14 14 C 1.33391 * 125.20119 * 89.99875 * 13 10 9 15 15 C 1.50698 * 122.54069 * 0.02562 * 14 13 10 16 16 O 1.42901 * 109.47748 * 74.99277 * 15 14 13 17 17 Si 1.86301 * 109.47387 * 194.99758 * 15 14 13 18 18 C 1.38426 * 114.92417 * 179.97438 * 14 13 10 19 19 C 1.33392 * 114.91932 * 0.02562 * 18 14 13 20 20 S 1.75885 * 125.20646 * 269.69847 * 13 10 9 21 21 C 1.53781 * 113.61454 * 185.00032 * 3 2 1 22 22 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 23 23 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 24 24 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 25 25 H 1.08996 * 113.61199 * 254.52251 * 5 3 2 26 26 H 1.08996 * 113.61879 * 25.43756 * 5 3 2 27 27 H 1.09003 * 109.46797 * 32.53232 * 8 6 5 28 28 H 1.08997 * 109.47412 * 152.53685 * 8 6 5 29 29 H 0.97001 * 119.99663 * 344.99631 * 9 8 6 30 30 H 1.09005 * 109.46661 * 314.99101 * 15 14 13 31 31 H 0.96701 * 113.99309 * 60.00041 * 16 15 14 32 32 H 1.48492 * 110.00245 * 179.97438 * 17 15 14 33 33 H 1.48504 * 109.99508 * 301.31627 * 17 15 14 34 34 H 1.07998 * 122.54068 * 179.97438 * 18 14 13 35 35 H 1.07993 * 125.20758 * 180.02562 * 19 18 14 36 36 H 1.09007 * 113.61545 * 334.56974 * 21 3 2 37 37 H 1.08996 * 113.61597 * 105.38670 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 -0.6952 5 6 2.3008 2.3814 1.4078 6 6 3.5206 3.1737 0.9084 7 1 3.2644 4.1347 0.4625 8 6 4.6490 3.2778 1.9364 9 7 4.4211 4.4424 2.7955 10 16 5.2573 4.5999 4.2160 11 8 4.8429 5.8313 4.7913 12 8 5.1465 3.3523 4.8873 13 6 6.9589 4.7921 3.8011 14 6 7.5691 5.9571 3.5780 15 6 6.8486 7.2782 3.6593 16 8 6.6241 7.6149 5.0298 17 14 7.8854 8.6016 2.8565 18 6 8.9146 5.8608 3.2673 19 6 9.3969 4.6175 3.2374 20 16 8.1144 3.4778 3.6249 21 6 3.7283 2.0519 -0.1228 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.4457 3.0090 1.6588 26 1 2.5395 1.6578 2.1871 27 1 4.6690 2.3747 2.5465 28 1 5.6023 3.3885 1.4197 29 1 3.7803 5.1213 2.5321 30 1 5.8919 7.2027 3.1423 31 1 7.4337 7.6989 5.5518 32 1 7.1856 9.9092 2.9296 33 1 9.2048 8.6926 3.5321 34 1 9.5271 6.7266 3.0636 35 1 10.4196 4.3516 3.0146 36 1 4.3573 1.2380 0.2381 37 1 4.0258 2.4119 -1.1076 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18360574_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:38 Heat of formation + Delta-G solvation = -33.915012 kcal Electronic energy + Delta-G solvation = -22875.987856 eV Core-core repulsion = 19387.335548 eV Total energy + Delta-G solvation = -3488.652308 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.036 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.24777 -40.11929 -38.05351 -37.07515 -36.73113 -35.82515 -31.47458 -29.96134 -28.87548 -27.98941 -26.82214 -24.37162 -24.13715 -21.64217 -20.88880 -19.93244 -19.41723 -18.44018 -18.36229 -17.76054 -16.85514 -16.78189 -16.56785 -16.22936 -15.87308 -15.57085 -15.42275 -15.29176 -15.17231 -14.46269 -14.26718 -14.20300 -14.08009 -13.64426 -13.57035 -13.51092 -13.20601 -13.06903 -12.95450 -12.91194 -12.67223 -12.48285 -12.18577 -12.00563 -11.67306 -11.59587 -11.53586 -10.83575 -10.63042 -10.62766 -10.45914 -9.70124 -8.63353 -5.06768 -0.82067 -0.51581 0.27687 0.61549 0.74371 1.14625 1.16496 1.49525 1.59129 1.89381 2.01679 2.72603 3.25613 3.32115 3.37090 3.43631 3.48826 3.54851 3.66703 3.92518 3.96851 4.07750 4.18992 4.19473 4.21854 4.32505 4.34344 4.47790 4.61761 4.62318 4.67600 4.71763 4.76812 4.80475 4.85680 4.97919 5.00411 5.26878 5.84863 6.44319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.255 6.255 3 C -0.084 4.084 4 H 0.106 0.894 5 C -0.125 4.125 6 C -0.112 4.112 7 H 0.104 0.896 8 C 0.124 3.876 9 N -1.114 6.114 10 S 2.708 3.292 11 O -0.922 6.922 12 O -0.951 6.951 13 C -0.776 4.776 14 C 0.007 3.993 15 C -0.075 4.075 16 O -0.492 6.492 17 Si 0.692 3.308 18 C -0.169 4.169 19 C -0.164 4.164 20 S 0.226 5.774 21 C -0.103 4.103 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.100 0.900 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.420 0.580 30 H 0.121 0.879 31 H 0.369 0.631 32 H -0.250 1.250 33 H -0.256 1.256 34 H 0.155 0.845 35 H 0.178 0.822 36 H 0.096 0.904 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.268 0.609 -6.347 6.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.026 6.026 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.165 4.165 6 C -0.134 4.134 7 H 0.122 0.878 8 C -0.003 4.003 9 N -0.875 5.875 10 S 2.792 3.208 11 O -0.911 6.911 12 O -0.941 6.941 13 C -0.976 4.976 14 C -0.011 4.011 15 C -0.188 4.188 16 O -0.296 6.296 17 Si 0.592 3.408 18 C -0.199 4.199 19 C -0.302 4.302 20 S 0.494 5.506 21 C -0.142 4.142 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.256 0.744 30 H 0.139 0.861 31 H 0.215 0.785 32 H -0.175 1.175 33 H -0.181 1.181 34 H 0.172 0.828 35 H 0.196 0.804 36 H 0.114 0.886 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.470 -1.365 -5.427 6.117 hybrid contribution -0.159 2.625 0.375 2.657 sum 2.311 1.260 -5.052 5.697 Atomic orbital electron populations 1.23370 0.94096 1.06623 1.04959 1.86954 1.07637 1.10404 1.97638 1.24686 1.01035 0.94300 1.01305 0.87588 1.23444 0.98306 0.99192 0.95578 1.22703 0.95482 0.98989 0.96210 0.87801 1.21398 0.98629 0.87856 0.92378 1.55585 1.56273 1.33026 1.42636 1.01764 0.72282 0.74168 0.72574 1.93732 1.79940 1.43838 1.73630 1.93621 1.85502 1.44438 1.70565 1.35851 1.30081 1.03694 1.27988 1.19167 0.93798 0.95011 0.93132 1.25072 1.06770 0.97433 0.89476 1.86930 1.33855 1.90726 1.18127 0.95193 0.77555 0.78261 0.89840 1.20345 0.94902 0.98658 1.05972 1.26234 1.04255 0.96850 1.02850 1.84389 0.97169 1.05757 1.63332 1.22809 0.93451 0.98012 0.99956 0.90372 0.90516 0.88083 0.90699 0.88195 0.89711 0.91123 0.74438 0.86110 0.78489 1.17484 1.18089 0.82824 0.80441 0.88580 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.76 101.05 1.09 1.22 16 2 S -0.26 -0.20 22.17 -107.50 -2.38 -2.59 16 3 C -0.08 0.13 4.28 -25.92 -0.11 0.02 16 4 H 0.11 -0.23 8.14 -51.93 -0.42 -0.66 16 5 C -0.13 0.24 7.22 -25.92 -0.19 0.05 16 6 C -0.11 0.37 3.78 -89.81 -0.34 0.03 16 7 H 0.10 -0.47 8.12 -51.93 -0.42 -0.89 16 8 C 0.12 -0.30 6.06 -4.05 -0.02 -0.32 16 9 N -1.11 1.80 6.00 -10.62 -0.06 1.74 16 10 S 2.71 5.62 5.66 -107.50 -0.61 5.01 16 11 O -0.92 -4.34 14.29 -66.03 -0.94 -5.28 16 12 O -0.95 -4.90 17.38 -57.17 -0.99 -5.90 16 13 C -0.78 -0.66 6.54 29.04 0.19 -0.47 16 14 C 0.01 0.00 5.13 -106.25 -0.55 -0.55 16 15 C -0.08 -0.02 1.79 36.00 0.06 0.05 16 16 O -0.49 -1.26 11.13 -56.66 -0.63 -1.89 16 17 Si 0.69 -1.08 30.46 -169.99 -5.18 -6.26 16 18 C -0.17 0.25 8.74 -41.21 -0.36 -0.11 16 19 C -0.16 0.33 11.23 29.04 0.33 0.66 16 20 S 0.23 -0.08 23.21 -107.50 -2.50 -2.58 16 21 C -0.10 0.27 7.23 -25.92 -0.19 0.09 16 22 H 0.08 -0.12 8.14 -51.92 -0.42 -0.54 16 23 H 0.08 -0.14 8.14 -51.92 -0.42 -0.56 16 24 H 0.10 -0.15 8.14 -51.92 -0.42 -0.57 16 25 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 26 H 0.10 -0.07 7.86 -51.93 -0.41 -0.48 16 27 H 0.08 -0.12 7.46 -51.93 -0.39 -0.51 16 28 H 0.07 -0.27 8.14 -51.93 -0.42 -0.70 16 29 H 0.42 -1.50 8.64 -34.47 -0.30 -1.80 16 30 H 0.12 -0.07 7.16 -51.93 -0.37 -0.44 16 31 H 0.37 -0.30 8.70 45.56 0.40 0.10 16 32 H -0.25 -0.44 7.11 56.52 0.40 -0.04 16 33 H -0.26 0.06 6.80 56.52 0.38 0.44 16 34 H 0.15 -0.48 5.53 -52.49 -0.29 -0.77 16 35 H 0.18 -0.83 8.06 -52.49 -0.42 -1.26 16 36 H 0.10 -0.21 8.06 -51.93 -0.42 -0.63 16 37 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 LS Contribution 343.57 15.07 5.18 5.18 Total: 0.00 -9.52 343.57 -13.00 -22.52 By element: Atomic # 1 Polarization: -5.81 SS G_CDS: -4.80 Total: -10.61 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.09 Total: 0.66 kcal Atomic # 7 Polarization: 1.80 SS G_CDS: -0.06 Total: 1.74 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -2.57 Total: -13.07 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.18 Total: -6.26 kcal Atomic # 16 Polarization: 5.33 SS G_CDS: -5.49 Total: -0.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -9.52 -13.00 -22.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.392 kcal (2) G-P(sol) polarization free energy of solvation -9.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds