Wall clock time and date at job start Mon Mar 8 2021 10:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81399 * 103.00088 * 2 1 4 4 H 1.08995 * 112.85048 * 316.19650 * 3 2 1 5 5 C 1.53783 * 113.61032 * 87.50217 * 3 2 1 6 6 C 1.53786 * 87.07879 * 139.98017 * 5 3 2 7 7 H 1.09002 * 113.61184 * 89.11275 * 6 5 3 8 8 C 1.52996 * 113.69454 * 220.00632 * 6 5 3 9 9 N 1.46498 * 109.47199 * 272.53780 * 8 6 5 10 10 S 1.65596 * 120.00362 * 164.99769 * 9 8 6 11 11 O 1.42098 * 106.40699 * 178.54047 * 10 9 8 12 12 O 1.42101 * 106.40218 * 311.45784 * 10 9 8 13 13 C 1.76195 * 107.21908 * 64.99584 * 10 9 8 14 14 C 1.33391 * 125.20119 * 89.99875 * 13 10 9 15 15 C 1.50698 * 122.54069 * 0.02562 * 14 13 10 16 16 O 1.42901 * 109.47748 * 74.99277 * 15 14 13 17 17 Si 1.86301 * 109.47387 * 194.99758 * 15 14 13 18 18 C 1.38426 * 114.92417 * 179.97438 * 14 13 10 19 19 C 1.33392 * 114.91932 * 0.02562 * 18 14 13 20 20 S 1.75885 * 125.20646 * 269.69847 * 13 10 9 21 21 C 1.53781 * 113.61454 * 185.00032 * 3 2 1 22 22 H 1.09002 * 109.46881 * 299.99990 * 1 2 3 23 23 H 1.09000 * 109.46946 * 60.00038 * 1 2 3 24 24 H 1.08999 * 109.47514 * 179.97438 * 1 2 3 25 25 H 1.08996 * 113.61199 * 254.52251 * 5 3 2 26 26 H 1.08996 * 113.61879 * 25.43756 * 5 3 2 27 27 H 1.09003 * 109.46797 * 32.53232 * 8 6 5 28 28 H 1.08997 * 109.47412 * 152.53685 * 8 6 5 29 29 H 0.97001 * 119.99663 * 344.99631 * 9 8 6 30 30 H 1.09005 * 109.46661 * 314.99101 * 15 14 13 31 31 H 0.96701 * 113.99309 * 60.00041 * 16 15 14 32 32 H 1.48492 * 110.00245 * 179.97438 * 17 15 14 33 33 H 1.48504 * 109.99508 * 301.31627 * 17 15 14 34 34 H 1.07998 * 122.54068 * 179.97438 * 18 14 13 35 35 H 1.07993 * 125.20758 * 180.02562 * 19 18 14 36 36 H 1.09007 * 113.61545 * 334.56974 * 21 3 2 37 37 H 1.08996 * 113.61597 * 105.38670 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 -0.6952 5 6 2.3008 2.3814 1.4078 6 6 3.5206 3.1737 0.9084 7 1 3.2644 4.1347 0.4625 8 6 4.6490 3.2778 1.9364 9 7 4.4211 4.4424 2.7955 10 16 5.2573 4.5999 4.2160 11 8 4.8429 5.8313 4.7913 12 8 5.1465 3.3523 4.8873 13 6 6.9589 4.7921 3.8011 14 6 7.5691 5.9571 3.5780 15 6 6.8486 7.2782 3.6593 16 8 6.6241 7.6149 5.0298 17 14 7.8854 8.6016 2.8565 18 6 8.9146 5.8608 3.2673 19 6 9.3969 4.6175 3.2374 20 16 8.1144 3.4778 3.6249 21 6 3.7283 2.0519 -0.1228 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.4457 3.0090 1.6588 26 1 2.5395 1.6578 2.1871 27 1 4.6690 2.3747 2.5465 28 1 5.6023 3.3885 1.4197 29 1 3.7803 5.1213 2.5321 30 1 5.8919 7.2027 3.1423 31 1 7.4337 7.6989 5.5518 32 1 7.1856 9.9092 2.9296 33 1 9.2048 8.6926 3.5321 34 1 9.5271 6.7266 3.0636 35 1 10.4196 4.3516 3.0146 36 1 4.3573 1.2380 0.2381 37 1 4.0258 2.4119 -1.1076 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18360574_13652106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:38 Heat of formation + Delta-G solvation = -35.149521 kcal Electronic energy + Delta-G solvation = -22876.041388 eV Core-core repulsion = 19387.335548 eV Total energy + Delta-G solvation = -3488.705841 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.036 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.09640 -40.07079 -38.28538 -37.14296 -36.96200 -35.74947 -31.40259 -29.87708 -28.75500 -27.98684 -26.65099 -24.28506 -23.99909 -21.64315 -20.75335 -19.94202 -19.39605 -18.51173 -18.39084 -17.75298 -16.87900 -16.62939 -16.58179 -16.19791 -15.87643 -15.60228 -15.31272 -15.23596 -15.11024 -14.36969 -14.20614 -14.14122 -14.00586 -13.55180 -13.46816 -13.43217 -13.30687 -13.25513 -13.18810 -12.90196 -12.73162 -12.45528 -12.22297 -11.84640 -11.56106 -11.53705 -11.38178 -10.78606 -10.62982 -10.52559 -10.38110 -9.64704 -8.68373 -4.94797 -0.82132 -0.56158 0.31496 0.72895 0.80871 1.23166 1.26896 1.59134 1.66195 1.97235 1.99813 2.62128 3.34907 3.41120 3.46113 3.50213 3.57477 3.68627 3.82458 4.08254 4.14219 4.20458 4.30212 4.31544 4.37836 4.42869 4.48709 4.67465 4.74008 4.80185 4.84868 4.85946 4.87302 4.91666 5.05204 5.12508 5.13682 5.46526 6.03816 6.51934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.316 6.316 3 C -0.074 4.074 4 H 0.117 0.883 5 C -0.131 4.131 6 C -0.099 4.099 7 H 0.126 0.874 8 C 0.118 3.882 9 N -1.101 6.101 10 S 2.717 3.283 11 O -0.955 6.955 12 O -0.991 6.991 13 C -0.794 4.794 14 C 0.013 3.987 15 C -0.100 4.100 16 O -0.522 6.522 17 Si 0.790 3.210 18 C -0.177 4.177 19 C -0.145 4.145 20 S 0.209 5.791 21 C -0.100 4.100 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.430 0.570 30 H 0.122 0.878 31 H 0.379 0.621 32 H -0.300 1.300 33 H -0.266 1.266 34 H 0.175 0.825 35 H 0.209 0.791 36 H 0.088 0.912 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 1.444 -7.868 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.088 6.088 3 C -0.203 4.203 4 H 0.135 0.865 5 C -0.170 4.170 6 C -0.120 4.120 7 H 0.144 0.856 8 C -0.007 4.007 9 N -0.865 5.865 10 S 2.805 3.195 11 O -0.945 6.945 12 O -0.981 6.981 13 C -0.997 4.997 14 C -0.005 4.005 15 C -0.210 4.210 16 O -0.328 6.328 17 Si 0.692 3.308 18 C -0.206 4.206 19 C -0.282 4.282 20 S 0.475 5.525 21 C -0.140 4.140 22 H 0.100 0.900 23 H 0.104 0.896 24 H 0.121 0.879 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.268 0.732 30 H 0.140 0.860 31 H 0.227 0.773 32 H -0.228 1.228 33 H -0.192 1.192 34 H 0.192 0.808 35 H 0.226 0.774 36 H 0.106 0.894 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.724 -0.561 -6.936 7.892 hybrid contribution -0.558 2.374 0.840 2.579 sum 3.166 1.813 -6.096 7.104 Atomic orbital electron populations 1.23364 0.92052 1.06977 1.05592 1.87141 1.10148 1.13744 1.97774 1.24778 1.01916 0.91964 1.01635 0.86455 1.23435 0.99320 0.99193 0.95099 1.22677 0.94214 0.99630 0.95518 0.85633 1.21543 1.00054 0.86876 0.92276 1.55254 1.56054 1.33592 1.41647 1.00990 0.72768 0.72727 0.73014 1.93685 1.80934 1.44759 1.75132 1.93569 1.86389 1.45848 1.72326 1.35530 1.29421 1.04677 1.30029 1.19285 0.94503 0.94405 0.92352 1.25541 1.07910 0.98789 0.88765 1.86889 1.35307 1.91010 1.19598 0.94139 0.74943 0.73839 0.87910 1.20529 0.94249 0.99674 1.06149 1.26614 1.04910 0.95884 1.00835 1.84488 0.97928 1.06225 1.63817 1.22829 0.92540 0.97865 1.00768 0.89964 0.89576 0.87941 0.90143 0.89913 0.91095 0.89194 0.73178 0.85988 0.77297 1.22778 1.19215 0.80764 0.77375 0.89381 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.20 10.76 113.37 1.22 1.42 16 2 S -0.32 -0.83 22.17 -56.49 -1.25 -2.08 16 3 C -0.07 0.24 4.28 31.12 0.13 0.37 16 4 H 0.12 -0.63 8.14 -2.39 -0.02 -0.65 16 5 C -0.13 0.45 7.22 31.12 0.22 0.67 16 6 C -0.10 0.71 3.78 -10.27 -0.04 0.67 16 7 H 0.13 -1.39 8.12 -2.39 -0.02 -1.41 16 8 C 0.12 -0.55 6.06 86.38 0.52 -0.03 16 9 N -1.10 2.96 6.00 -187.50 -1.12 1.84 16 10 S 2.72 15.38 5.66 -56.49 -0.32 15.06 16 11 O -0.96 -10.78 14.29 -119.53 -1.71 -12.49 16 12 O -0.99 -12.49 17.38 -128.00 -2.22 -14.71 16 13 C -0.79 -1.68 6.54 66.72 0.44 -1.25 16 14 C 0.01 -0.01 5.13 -20.92 -0.11 -0.11 16 15 C -0.10 -0.05 1.79 71.24 0.13 0.08 16 16 O -0.52 -3.20 11.13 -128.50 -1.43 -4.63 16 17 Si 0.79 -3.16 30.46 68.60 2.09 -1.07 16 18 C -0.18 0.86 8.74 21.22 0.19 1.04 16 19 C -0.14 0.88 11.23 66.72 0.75 1.63 16 20 S 0.21 -0.19 23.21 -56.49 -1.31 -1.50 16 21 C -0.10 0.58 7.23 31.12 0.23 0.81 16 22 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 24 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 25 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 26 H 0.08 0.03 7.86 -2.39 -0.02 0.01 16 27 H 0.07 -0.10 7.46 -2.39 -0.02 -0.12 16 28 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 29 H 0.43 -3.01 8.64 -96.75 -0.84 -3.85 16 30 H 0.12 -0.08 7.16 -2.38 -0.02 -0.09 16 31 H 0.38 -0.30 8.70 -74.06 -0.64 -0.94 16 32 H -0.30 -1.26 7.11 99.48 0.71 -0.55 16 33 H -0.27 0.63 6.80 99.48 0.68 1.31 16 34 H 0.18 -1.59 5.53 -2.91 -0.02 -1.60 16 35 H 0.21 -2.64 8.06 -2.91 -0.02 -2.66 16 36 H 0.09 -0.34 8.06 -2.38 -0.02 -0.36 16 37 H 0.10 -0.82 8.14 -2.39 -0.02 -0.84 16 Total: 0.00 -24.08 343.57 -3.97 -28.05 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: -0.36 Total: -13.76 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 3.68 Total: 5.29 kcal Atomic # 7 Polarization: 2.96 SS G_CDS: -1.12 Total: 1.84 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -5.36 Total: -31.83 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: 2.09 Total: -1.07 kcal Atomic # 16 Polarization: 14.36 SS G_CDS: -2.88 Total: 11.48 kcal Total: -24.08 -3.97 -28.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_13652106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.103 kcal (2) G-P(sol) polarization free energy of solvation -24.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds