Wall clock time and date at job start Mon Mar 8 2021 10:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81395 * 103.00008 * 2 1 4 4 H 1.09004 * 112.84703 * 45.34119 * 3 2 1 5 5 C 1.53785 * 113.61543 * 176.52560 * 3 2 1 6 6 C 1.53782 * 87.07823 * 139.98093 * 5 3 2 7 7 H 1.09008 * 113.61093 * 89.12383 * 6 5 3 8 8 C 1.52997 * 113.61623 * 220.01711 * 6 5 3 9 9 N 1.46498 * 109.47278 * 185.00299 * 8 6 5 10 10 S 1.65602 * 120.00344 * 163.58888 * 9 8 6 11 11 O 1.42098 * 106.40551 * 177.30267 * 10 9 8 12 12 O 1.42102 * 106.40025 * 310.22910 * 10 9 8 13 13 C 1.76207 * 107.21524 * 63.76569 * 10 9 8 14 14 C 1.33383 * 122.54168 * 66.91915 * 13 10 9 15 15 C 1.50704 * 125.20288 * 0.02562 * 14 13 10 16 16 O 1.42898 * 109.47247 * 316.94834 * 15 14 13 17 17 Si 1.86292 * 109.47270 * 196.94503 * 15 14 13 18 18 S 1.75882 * 109.59491 * 179.90551 * 14 13 10 19 19 C 1.75883 * 90.97148 * 0.30111 * 18 14 13 20 20 C 1.33395 * 109.58933 * 359.83060 * 19 18 14 21 21 C 1.53779 * 113.61900 * 274.13952 * 3 2 1 22 22 H 1.09004 * 109.46952 * 299.99314 * 1 2 3 23 23 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47030 * 59.99731 * 1 2 3 25 25 H 1.08993 * 113.61809 * 254.53438 * 5 3 2 26 26 H 1.09002 * 113.61179 * 25.35350 * 5 3 2 27 27 H 1.08992 * 109.47777 * 305.00454 * 8 6 5 28 28 H 1.09004 * 109.47175 * 65.00700 * 8 6 5 29 29 H 0.97004 * 120.00100 * 343.58664 * 9 8 6 30 30 H 1.09001 * 109.47141 * 76.94836 * 15 14 13 31 31 H 0.96697 * 114.00549 * 179.97438 * 16 15 14 32 32 H 1.48504 * 110.00218 * 60.00171 * 17 15 14 33 33 H 1.48500 * 109.99999 * 181.31848 * 17 15 14 34 34 H 1.07998 * 125.20473 * 179.79667 * 19 18 14 35 35 H 1.08001 * 122.52965 * 180.02562 * 20 19 18 36 36 H 1.09002 * 113.60923 * 334.56535 * 21 3 2 37 37 H 1.08995 * 113.61633 * 105.46712 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6293 2.3387 0.7145 5 6 3.7310 2.0513 0.0854 6 6 3.4966 3.1793 -0.9333 7 1 3.2522 4.1376 -0.4750 8 6 4.5968 3.2884 -1.9909 9 7 4.3469 4.4582 -2.8366 10 16 5.5574 5.0642 -3.7905 11 8 4.9894 6.1404 -4.5243 12 8 6.6946 5.2105 -2.9510 13 6 5.9656 3.8193 -4.9688 14 6 5.1204 3.4318 -5.9251 15 6 3.7338 3.9836 -6.1350 16 8 3.0789 4.1191 -4.8722 17 14 2.7603 2.8216 -7.2179 18 16 5.8729 2.1808 -6.9060 19 6 7.3329 2.2501 -5.9277 20 6 7.1855 3.1652 -4.9684 21 6 2.2615 2.3907 -1.4053 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 4.0538 2.4068 1.0639 26 1 4.3503 1.2391 -0.2953 27 1 5.5638 3.3952 -1.4996 28 1 4.5994 2.3889 -2.6066 29 1 3.4723 4.8779 -2.8379 30 1 3.8000 4.9593 -6.6165 31 1 2.1798 4.4702 -4.9309 32 1 2.6626 1.4877 -6.5726 33 1 1.4014 3.3701 -7.4585 34 1 8.2138 1.6441 -6.0800 35 1 7.9595 3.3796 -4.2464 36 1 2.4783 1.6720 -2.1956 37 1 1.3998 3.0196 -1.6284 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18360574_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:42 Heat of formation + Delta-G solvation = -31.984312 kcal Electronic energy + Delta-G solvation = -23519.576384 eV Core-core repulsion = 20031.007797 eV Total energy + Delta-G solvation = -3488.568587 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.036 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.18173 -39.54864 -38.21746 -37.52901 -36.64136 -35.54706 -31.98026 -29.99052 -28.73042 -27.47777 -26.80469 -24.35496 -23.93546 -21.73528 -20.78311 -19.81092 -19.06714 -18.66966 -18.24979 -17.96766 -17.38015 -16.91070 -16.55790 -16.24193 -15.81889 -15.35204 -15.20365 -15.00155 -14.91220 -14.46982 -14.33990 -14.24501 -14.04675 -13.73844 -13.59094 -13.55533 -13.13213 -13.01755 -12.97957 -12.94659 -12.79958 -12.62209 -12.22470 -11.95126 -11.66879 -11.64128 -11.39182 -10.99424 -10.81287 -10.33553 -10.07437 -9.72218 -8.65930 -5.27698 -0.55336 -0.36933 0.32001 0.62443 0.72598 0.97425 1.18365 1.41176 1.57298 1.71380 2.20584 2.76922 3.04281 3.31493 3.37513 3.42720 3.55961 3.56935 3.72965 4.07601 4.09567 4.14846 4.17481 4.20030 4.28260 4.35881 4.46361 4.61987 4.65555 4.71486 4.72327 4.73366 4.80970 4.93204 4.96482 5.07485 5.17306 5.32280 6.05788 6.17583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.257 6.257 3 C -0.085 4.085 4 H 0.105 0.895 5 C -0.104 4.104 6 C -0.110 4.110 7 H 0.103 0.897 8 C 0.133 3.867 9 N -1.090 6.090 10 S 2.721 3.279 11 O -0.957 6.957 12 O -0.963 6.963 13 C -0.667 4.667 14 C -0.053 4.053 15 C -0.067 4.067 16 O -0.531 6.531 17 Si 0.668 3.332 18 S 0.158 5.842 19 C -0.212 4.212 20 C -0.077 4.077 21 C -0.120 4.120 22 H 0.076 0.924 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.419 0.581 30 H 0.112 0.888 31 H 0.392 0.608 32 H -0.236 1.236 33 H -0.236 1.236 34 H 0.176 0.824 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.236 -2.010 -2.507 4.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.028 6.028 3 C -0.214 4.214 4 H 0.123 0.877 5 C -0.143 4.143 6 C -0.132 4.132 7 H 0.121 0.879 8 C 0.006 3.994 9 N -0.852 5.852 10 S 2.806 3.194 11 O -0.947 6.947 12 O -0.953 6.953 13 C -0.766 4.766 14 C -0.174 4.174 15 C -0.178 4.178 16 O -0.340 6.340 17 Si 0.565 3.435 18 S 0.422 5.578 19 C -0.348 4.348 20 C -0.105 4.105 21 C -0.160 4.160 22 H 0.095 0.905 23 H 0.119 0.881 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.255 0.745 30 H 0.129 0.871 31 H 0.242 0.758 32 H -0.160 1.160 33 H -0.159 1.159 34 H 0.194 0.806 35 H 0.176 0.824 36 H 0.115 0.885 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.585 -3.848 -3.554 5.842 hybrid contribution -1.480 1.772 1.631 2.827 sum -4.065 -2.076 -1.923 4.953 Atomic orbital electron populations 1.23356 0.94221 1.06546 1.04877 1.86958 1.07480 1.10708 1.97664 1.24713 1.01186 0.94024 1.01434 0.87684 1.22801 0.93179 0.98086 1.00254 1.22714 0.95550 0.98714 0.96218 0.87907 1.21227 0.98996 0.87686 0.91518 1.55220 1.29045 1.43624 1.57304 1.01171 0.72649 0.72653 0.72877 1.93561 1.78087 1.50433 1.72603 1.93583 1.50435 1.85059 1.66240 1.29923 1.02436 1.24796 1.19460 1.23745 0.97474 0.98172 0.97979 1.24487 0.92486 1.07891 0.92954 1.86498 1.33150 1.87733 1.26654 0.95010 0.83866 0.79425 0.85238 1.84199 1.08403 1.33300 1.31928 1.25904 1.02650 1.05680 1.00557 1.19770 0.95883 0.95152 0.99679 1.23400 0.98212 0.98998 0.95360 0.90506 0.88134 0.90530 0.89856 0.88721 0.90160 0.91663 0.74461 0.87088 0.75776 1.15952 1.15875 0.80649 0.82425 0.88534 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.76 101.05 1.09 1.21 16 2 S -0.26 -0.27 22.17 -107.50 -2.38 -2.66 16 3 C -0.08 0.09 4.27 -25.92 -0.11 -0.02 16 4 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 5 C -0.10 0.15 7.23 -25.92 -0.19 -0.04 16 6 C -0.11 0.24 3.79 -89.72 -0.34 -0.10 16 7 H 0.10 -0.28 8.14 -51.92 -0.42 -0.70 16 8 C 0.13 -0.15 6.06 -4.04 -0.02 -0.17 16 9 N -1.09 0.69 4.13 -10.62 -0.04 0.64 16 10 S 2.72 6.91 4.92 -107.50 -0.53 6.38 16 11 O -0.96 -4.41 16.62 -62.95 -1.05 -5.46 16 12 O -0.96 -5.23 16.84 -57.17 -0.96 -6.19 16 13 C -0.67 -1.15 5.75 -41.21 -0.24 -1.38 16 14 C -0.05 -0.03 5.78 -36.00 -0.21 -0.24 16 15 C -0.07 0.09 2.12 36.01 0.08 0.17 16 16 O -0.53 1.27 7.98 -46.60 -0.37 0.90 16 17 Si 0.67 -1.50 31.12 -169.99 -5.29 -6.79 16 18 S 0.16 -0.12 20.77 -107.50 -2.23 -2.35 16 19 C -0.21 0.07 11.23 29.04 0.33 0.39 16 20 C -0.08 -0.09 9.69 -41.21 -0.40 -0.49 16 21 C -0.12 0.24 7.24 -25.83 -0.19 0.05 16 22 H 0.08 -0.12 8.14 -51.92 -0.42 -0.54 16 23 H 0.10 -0.14 8.14 -51.92 -0.42 -0.56 16 24 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 25 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 26 H 0.09 -0.09 8.06 -51.93 -0.42 -0.51 16 27 H 0.08 -0.05 7.75 -51.93 -0.40 -0.45 16 28 H 0.07 -0.08 7.85 -51.93 -0.41 -0.48 16 29 H 0.42 -1.02 7.55 -34.47 -0.26 -1.28 16 30 H 0.11 -0.21 7.89 -51.93 -0.41 -0.62 16 31 H 0.39 -2.43 8.74 45.56 0.40 -2.03 16 32 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 33 H -0.24 0.23 7.11 56.52 0.40 0.63 16 34 H 0.18 -0.47 8.06 -52.49 -0.42 -0.90 16 35 H 0.16 0.08 7.74 -52.49 -0.41 -0.33 16 36 H 0.10 -0.09 7.86 -51.93 -0.41 -0.50 16 37 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 LS Contribution 341.18 15.07 5.14 5.14 Total: 0.00 -8.51 341.18 -12.82 -21.33 By element: Atomic # 1 Polarization: -5.42 SS G_CDS: -4.89 Total: -10.31 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.20 Total: -0.62 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -0.04 Total: 0.64 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -2.38 Total: -10.75 kcal Atomic # 14 Polarization: -1.50 SS G_CDS: -5.29 Total: -6.79 kcal Atomic # 16 Polarization: 6.51 SS G_CDS: -5.15 Total: 1.36 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -8.51 -12.82 -21.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.658 kcal (2) G-P(sol) polarization free energy of solvation -8.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds