Wall clock time and date at job start Mon Mar 8 2021 10:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81395 * 103.00008 * 2 1 4 4 H 1.09004 * 112.84703 * 45.34119 * 3 2 1 5 5 C 1.53785 * 113.61543 * 176.52560 * 3 2 1 6 6 C 1.53782 * 87.07823 * 139.98093 * 5 3 2 7 7 H 1.09008 * 113.61093 * 89.12383 * 6 5 3 8 8 C 1.52997 * 113.61623 * 220.01711 * 6 5 3 9 9 N 1.46498 * 109.47278 * 185.00299 * 8 6 5 10 10 S 1.65602 * 120.00344 * 163.58888 * 9 8 6 11 11 O 1.42098 * 106.40551 * 177.30267 * 10 9 8 12 12 O 1.42102 * 106.40025 * 310.22910 * 10 9 8 13 13 C 1.76207 * 107.21524 * 63.76569 * 10 9 8 14 14 C 1.33383 * 122.54168 * 66.91915 * 13 10 9 15 15 C 1.50704 * 125.20288 * 0.02562 * 14 13 10 16 16 O 1.42898 * 109.47247 * 316.94834 * 15 14 13 17 17 Si 1.86292 * 109.47270 * 196.94503 * 15 14 13 18 18 S 1.75882 * 109.59491 * 179.90551 * 14 13 10 19 19 C 1.75883 * 90.97148 * 0.30111 * 18 14 13 20 20 C 1.33395 * 109.58933 * 359.83060 * 19 18 14 21 21 C 1.53779 * 113.61900 * 274.13952 * 3 2 1 22 22 H 1.09004 * 109.46952 * 299.99314 * 1 2 3 23 23 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 24 24 H 1.08993 * 109.47030 * 59.99731 * 1 2 3 25 25 H 1.08993 * 113.61809 * 254.53438 * 5 3 2 26 26 H 1.09002 * 113.61179 * 25.35350 * 5 3 2 27 27 H 1.08992 * 109.47777 * 305.00454 * 8 6 5 28 28 H 1.09004 * 109.47175 * 65.00700 * 8 6 5 29 29 H 0.97004 * 120.00100 * 343.58664 * 9 8 6 30 30 H 1.09001 * 109.47141 * 76.94836 * 15 14 13 31 31 H 0.96697 * 114.00549 * 179.97438 * 16 15 14 32 32 H 1.48504 * 110.00218 * 60.00171 * 17 15 14 33 33 H 1.48500 * 109.99999 * 181.31848 * 17 15 14 34 34 H 1.07998 * 125.20473 * 179.79667 * 19 18 14 35 35 H 1.08001 * 122.52965 * 180.02562 * 20 19 18 36 36 H 1.09002 * 113.60923 * 334.56535 * 21 3 2 37 37 H 1.08995 * 113.61633 * 105.46712 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6293 2.3387 0.7145 5 6 3.7310 2.0513 0.0854 6 6 3.4966 3.1793 -0.9333 7 1 3.2522 4.1376 -0.4750 8 6 4.5968 3.2884 -1.9909 9 7 4.3469 4.4582 -2.8366 10 16 5.5574 5.0642 -3.7905 11 8 4.9894 6.1404 -4.5243 12 8 6.6946 5.2105 -2.9510 13 6 5.9656 3.8193 -4.9688 14 6 5.1204 3.4318 -5.9251 15 6 3.7338 3.9836 -6.1350 16 8 3.0789 4.1191 -4.8722 17 14 2.7603 2.8216 -7.2179 18 16 5.8729 2.1808 -6.9060 19 6 7.3329 2.2501 -5.9277 20 6 7.1855 3.1652 -4.9684 21 6 2.2615 2.3907 -1.4053 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 4.0538 2.4068 1.0639 26 1 4.3503 1.2391 -0.2953 27 1 5.5638 3.3952 -1.4996 28 1 4.5994 2.3889 -2.6066 29 1 3.4723 4.8779 -2.8379 30 1 3.8000 4.9593 -6.6165 31 1 2.1798 4.4702 -4.9309 32 1 2.6626 1.4877 -6.5726 33 1 1.4014 3.3701 -7.4585 34 1 8.2138 1.6441 -6.0800 35 1 7.9595 3.3796 -4.2464 36 1 2.4783 1.6720 -2.1956 37 1 1.3998 3.0196 -1.6284 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18360574_14772022.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:41 Heat of formation + Delta-G solvation = -31.123618 kcal Electronic energy + Delta-G solvation = -23519.539062 eV Core-core repulsion = 20031.007797 eV Total energy + Delta-G solvation = -3488.531264 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.036 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.08585 -39.49991 -38.39513 -37.49873 -36.92333 -35.54298 -31.92993 -29.90619 -28.68063 -27.44622 -26.68318 -24.31388 -23.88169 -21.78028 -20.69143 -19.91157 -18.98168 -18.67409 -18.26232 -17.97290 -17.42525 -16.90497 -16.51104 -16.16115 -15.89186 -15.32631 -15.20329 -14.96640 -14.90955 -14.39427 -14.29499 -14.17574 -13.98900 -13.68145 -13.51763 -13.44844 -13.26629 -13.22580 -13.13732 -12.94628 -12.86785 -12.65706 -12.21955 -11.85368 -11.70471 -11.56731 -11.29217 -10.87384 -10.78714 -10.31835 -10.05347 -9.68419 -8.72214 -5.10209 -0.62931 -0.42862 0.35366 0.66271 0.76961 1.07286 1.16972 1.54753 1.62765 1.84139 2.13025 2.71954 3.11908 3.41637 3.44768 3.48830 3.55233 3.67375 3.82846 4.13663 4.16862 4.27028 4.28526 4.29699 4.38239 4.42193 4.52398 4.70789 4.73995 4.78400 4.82370 4.83701 4.90461 4.96086 5.04694 5.13769 5.16092 5.44992 6.28519 6.45874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.316 6.316 3 C -0.075 4.075 4 H 0.114 0.886 5 C -0.106 4.106 6 C -0.100 4.100 7 H 0.114 0.886 8 C 0.131 3.869 9 N -1.078 6.078 10 S 2.730 3.270 11 O -0.981 6.981 12 O -0.999 6.999 13 C -0.682 4.682 14 C -0.064 4.064 15 C -0.077 4.077 16 O -0.539 6.539 17 Si 0.734 3.266 18 S 0.188 5.812 19 C -0.213 4.213 20 C -0.099 4.099 21 C -0.112 4.112 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.428 0.572 30 H 0.118 0.882 31 H 0.408 0.592 32 H -0.273 1.273 33 H -0.250 1.250 34 H 0.198 0.802 35 H 0.156 0.844 36 H 0.086 0.914 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 -2.038 -3.070 5.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.088 6.088 3 C -0.204 4.204 4 H 0.132 0.868 5 C -0.146 4.146 6 C -0.122 4.122 7 H 0.132 0.868 8 C 0.005 3.995 9 N -0.842 5.842 10 S 2.818 3.182 11 O -0.972 6.972 12 O -0.989 6.989 13 C -0.783 4.783 14 C -0.185 4.185 15 C -0.187 4.187 16 O -0.351 6.351 17 Si 0.633 3.367 18 S 0.452 5.548 19 C -0.348 4.348 20 C -0.127 4.127 21 C -0.152 4.152 22 H 0.102 0.898 23 H 0.121 0.879 24 H 0.103 0.897 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.267 0.733 30 H 0.135 0.865 31 H 0.262 0.738 32 H -0.198 1.198 33 H -0.173 1.173 34 H 0.215 0.785 35 H 0.174 0.826 36 H 0.105 0.895 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.506 -3.833 -4.105 6.621 hybrid contribution -1.230 1.715 1.803 2.776 sum -4.736 -2.118 -2.301 5.676 Atomic orbital electron populations 1.23356 0.91910 1.06970 1.05619 1.87153 1.10231 1.13602 1.97813 1.24773 1.01318 0.92039 1.02266 0.86814 1.22831 0.93001 0.98082 1.00691 1.22656 0.94974 0.98977 0.95568 0.86757 1.21280 0.99237 0.87345 0.91685 1.54927 1.28835 1.43699 1.56755 1.00528 0.72314 0.72621 0.72709 1.93516 1.78404 1.52094 1.73155 1.93535 1.52153 1.85887 1.67319 1.29747 1.03215 1.25270 1.20049 1.24108 0.98243 0.98348 0.97804 1.24698 0.91924 1.08559 0.93528 1.86450 1.34465 1.87938 1.26294 0.94191 0.82353 0.76233 0.83896 1.84078 1.07682 1.32121 1.30960 1.26244 1.03602 1.05103 0.99888 1.19873 0.96003 0.96185 1.00621 1.23328 0.98671 0.98706 0.94510 0.89750 0.87927 0.89726 0.89348 0.89524 0.90779 0.91624 0.73284 0.86461 0.73840 1.19849 1.17349 0.78476 0.82647 0.89547 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.25 10.76 113.37 1.22 1.47 16 2 S -0.32 -0.85 22.17 -56.49 -1.25 -2.10 16 3 C -0.08 0.17 4.27 31.12 0.13 0.31 16 4 H 0.11 -0.45 8.14 -2.38 -0.02 -0.47 16 5 C -0.11 0.29 7.23 31.12 0.23 0.52 16 6 C -0.10 0.47 3.79 -10.21 -0.04 0.43 16 7 H 0.11 -0.75 8.14 -2.38 -0.02 -0.77 16 8 C 0.13 -0.23 6.06 86.38 0.52 0.29 16 9 N -1.08 0.97 4.13 -187.50 -0.77 0.19 16 10 S 2.73 16.92 4.92 -56.49 -0.28 16.65 16 11 O -0.98 -9.95 16.62 -122.48 -2.04 -11.98 16 12 O -1.00 -12.61 16.84 -128.00 -2.16 -14.76 16 13 C -0.68 -2.89 5.75 21.21 0.12 -2.77 16 14 C -0.06 -0.07 5.78 24.59 0.14 0.07 16 15 C -0.08 0.22 2.12 71.24 0.15 0.37 16 16 O -0.54 2.75 7.98 -138.11 -1.10 1.64 16 17 Si 0.73 -3.65 31.12 68.60 2.13 -1.52 16 18 S 0.19 -0.37 20.77 -56.49 -1.17 -1.55 16 19 C -0.21 0.16 11.23 66.72 0.75 0.91 16 20 C -0.10 -0.32 9.69 21.22 0.21 -0.11 16 21 C -0.11 0.51 7.24 31.18 0.23 0.73 16 22 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 23 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 24 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 25 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 26 H 0.09 -0.08 8.06 -2.39 -0.02 -0.10 16 27 H 0.07 -0.01 7.75 -2.39 -0.02 -0.03 16 28 H 0.07 -0.11 7.85 -2.38 -0.02 -0.12 16 29 H 0.43 -2.19 7.55 -96.74 -0.73 -2.92 16 30 H 0.12 -0.49 7.89 -2.39 -0.02 -0.51 16 31 H 0.41 -5.39 8.74 -74.06 -0.65 -6.03 16 32 H -0.27 -0.32 7.11 99.48 0.71 0.39 16 33 H -0.25 0.67 7.11 99.48 0.71 1.38 16 34 H 0.20 -1.22 8.06 -2.91 -0.02 -1.24 16 35 H 0.16 0.42 7.74 -2.91 -0.02 0.40 16 36 H 0.09 -0.16 7.86 -2.39 -0.02 -0.18 16 37 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 Total: 0.00 -20.17 341.18 -3.22 -23.39 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: -0.24 Total: -12.18 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 3.66 Total: 2.22 kcal Atomic # 7 Polarization: 0.97 SS G_CDS: -0.77 Total: 0.19 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -5.29 Total: -25.11 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.13 Total: -1.52 kcal Atomic # 16 Polarization: 15.70 SS G_CDS: -2.70 Total: 13.00 kcal Total: -20.17 -3.22 -23.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_14772022.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.736 kcal (2) G-P(sol) polarization free energy of solvation -20.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds