Wall clock time and date at job start Mon Mar 8 2021 10:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81403 * 102.99905 * 2 1 4 4 H 1.09001 * 112.85063 * 316.19624 * 3 2 1 5 5 C 1.53786 * 113.61378 * 87.50117 * 3 2 1 6 6 C 1.53778 * 87.07963 * 139.97961 * 5 3 2 7 7 H 1.09005 * 113.69234 * 89.12996 * 6 5 3 8 8 C 1.53001 * 113.61642 * 220.01872 * 6 5 3 9 9 N 1.46498 * 109.47089 * 272.49774 * 8 6 5 10 10 S 1.65602 * 119.99612 * 164.71987 * 9 8 6 11 11 O 1.42104 * 106.40175 * 178.81816 * 10 9 8 12 12 O 1.42095 * 106.40656 * 311.73868 * 10 9 8 13 13 C 1.76203 * 107.21635 * 65.28001 * 10 9 8 14 14 C 1.33389 * 122.53640 * 90.02520 * 13 10 9 15 15 S 1.75888 * 109.59047 * 180.02562 * 14 13 10 16 16 C 1.75884 * 90.96938 * 359.97438 * 15 14 13 17 17 C 1.50706 * 125.20315 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.46985 * 245.02109 * 17 16 15 19 19 Si 1.86309 * 109.46919 * 5.02126 * 17 16 15 20 20 C 1.33387 * 109.59419 * 359.72994 * 16 15 14 21 21 C 1.53781 * 113.61390 * 184.99932 * 3 2 1 22 22 H 1.08994 * 109.47057 * 300.00012 * 1 2 3 23 23 H 1.09004 * 109.46757 * 59.99912 * 1 2 3 24 24 H 1.08996 * 109.46898 * 179.97438 * 1 2 3 25 25 H 1.08999 * 113.60973 * 25.43157 * 5 3 2 26 26 H 1.08995 * 113.61650 * 254.53119 * 5 3 2 27 27 H 1.08996 * 109.47377 * 152.49932 * 8 6 5 28 28 H 1.08999 * 109.46886 * 32.50070 * 8 6 5 29 29 H 0.97001 * 120.00384 * 345.00465 * 9 8 6 30 30 H 1.08002 * 125.20784 * 0.02562 * 14 13 10 31 31 H 1.08997 * 109.47184 * 125.02043 * 17 16 15 32 32 H 0.96708 * 113.99769 * 60.00113 * 18 17 16 33 33 H 1.48498 * 109.99748 * 180.02562 * 19 17 16 34 34 H 1.48505 * 109.99711 * 301.31881 * 19 17 16 35 35 H 1.08000 * 122.54289 * 180.24521 * 20 16 15 36 36 H 1.08998 * 113.61354 * 105.47403 * 21 3 2 37 37 H 1.09001 * 113.61270 * 334.56707 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3008 2.3816 1.4077 6 6 3.5205 3.1738 0.9084 7 1 3.2658 4.1352 0.4624 8 6 4.6479 3.2766 1.9377 9 7 4.4202 4.4413 2.7967 10 16 5.2501 4.5941 4.2215 11 8 4.8327 5.8236 4.7991 12 8 5.1368 3.3443 4.8880 13 6 6.9535 4.7885 3.8147 14 6 7.5103 5.9831 3.6095 15 16 9.2151 5.7812 3.2269 16 6 9.0715 4.0342 3.3721 17 6 10.1962 3.0507 3.1746 18 8 9.9203 2.2342 2.0348 19 14 11.7903 3.9763 2.9043 20 6 7.8165 3.7134 3.6899 21 6 3.7283 2.0520 -0.1228 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 2.5394 1.6578 2.1870 26 1 1.4456 3.0090 1.6589 27 1 5.6018 3.3864 1.4221 28 1 4.6664 2.3734 2.5476 29 1 3.7803 5.1209 2.5328 30 1 6.9935 6.9295 3.6693 31 1 10.2874 2.4207 4.0594 32 1 9.8262 2.7295 1.2096 33 1 12.9072 3.0176 2.7076 34 1 11.6681 4.8629 1.7192 35 1 7.4967 2.6921 3.8347 36 1 4.0256 2.4135 -1.1072 37 1 4.3572 1.2382 0.2381 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18360574_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:45 Heat of formation + Delta-G solvation = -42.129460 kcal Electronic energy + Delta-G solvation = -22425.548069 eV Core-core repulsion = 18936.539556 eV Total energy + Delta-G solvation = -3489.008513 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.036 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26671 -39.56494 -38.22901 -37.71009 -36.85566 -35.84152 -31.90315 -29.97079 -28.89482 -27.27264 -26.83843 -24.99511 -24.12299 -21.51344 -21.03524 -20.00135 -19.27396 -18.55062 -18.04426 -17.90885 -17.47654 -16.83953 -16.77330 -16.46774 -15.88664 -15.53442 -15.45547 -15.25059 -14.91691 -14.47206 -14.31562 -14.26805 -14.14622 -13.87959 -13.64880 -13.57901 -13.30712 -13.16127 -13.07590 -12.98009 -12.94513 -12.50217 -12.35944 -12.01987 -11.69855 -11.64672 -11.53843 -10.88552 -10.83745 -10.61162 -10.29346 -9.91299 -8.64150 -5.18960 -0.77386 -0.51919 0.26217 0.52224 0.73460 0.95891 1.08188 1.40811 1.58289 1.77827 2.02806 2.70411 3.12431 3.21594 3.29745 3.31910 3.48605 3.54766 3.64160 3.77683 3.94530 4.15564 4.18081 4.18234 4.21062 4.31920 4.37109 4.46252 4.57925 4.61100 4.66404 4.71302 4.75998 4.84119 4.84675 4.96839 5.01682 5.25415 5.81015 6.18007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.254 6.254 3 C -0.085 4.085 4 H 0.105 0.895 5 C -0.125 4.125 6 C -0.113 4.113 7 H 0.102 0.898 8 C 0.127 3.873 9 N -1.114 6.114 10 S 2.709 3.291 11 O -0.956 6.956 12 O -0.947 6.947 13 C -0.688 4.688 14 C -0.083 4.083 15 S 0.158 5.842 16 C -0.226 4.226 17 C -0.034 4.034 18 O -0.521 6.521 19 Si 0.651 3.349 20 C -0.044 4.044 21 C -0.103 4.103 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.420 0.580 30 H 0.186 0.814 31 H 0.131 0.869 32 H 0.377 0.623 33 H -0.232 1.232 34 H -0.239 1.239 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 3.215 -3.194 4.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.026 6.026 3 C -0.213 4.213 4 H 0.124 0.876 5 C -0.164 4.164 6 C -0.135 4.135 7 H 0.121 0.879 8 C 0.000 4.000 9 N -0.875 5.875 10 S 2.796 3.204 11 O -0.946 6.946 12 O -0.937 6.937 13 C -0.787 4.787 14 C -0.222 4.222 15 S 0.422 5.578 16 C -0.344 4.344 17 C -0.147 4.147 18 O -0.327 6.327 19 Si 0.549 3.451 20 C -0.073 4.073 21 C -0.142 4.142 22 H 0.096 0.904 23 H 0.095 0.905 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.255 0.745 30 H 0.203 0.797 31 H 0.148 0.852 32 H 0.225 0.775 33 H -0.155 1.155 34 H -0.163 1.163 35 H 0.175 0.825 36 H 0.101 0.899 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.072 2.802 -2.782 5.003 hybrid contribution -2.374 0.292 -1.285 2.716 sum 0.698 3.094 -4.068 5.158 Atomic orbital electron populations 1.23371 0.94101 1.06633 1.04948 1.86975 1.07620 1.10338 1.97635 1.24685 1.00996 0.94344 1.01316 0.87636 1.23440 0.98255 0.99172 0.95577 1.22710 0.95591 0.98910 0.96273 0.87947 1.21371 0.98473 0.87826 0.92294 1.55503 1.56636 1.33054 1.42303 1.01601 0.72717 0.73705 0.72408 1.93618 1.80930 1.45504 1.74525 1.93611 1.85492 1.43770 1.70827 1.30057 1.27696 0.98662 1.22289 1.25916 0.98362 1.01090 0.96803 1.84457 1.07085 1.01672 1.64579 1.25012 1.00138 0.97049 1.12200 1.24415 1.01862 0.95894 0.92489 1.86657 1.92674 1.35513 1.17869 0.95152 0.77523 0.83040 0.89344 1.19643 0.91199 0.99415 0.97040 1.22807 0.93491 0.98030 0.99901 0.90364 0.90533 0.88067 0.88132 0.90715 0.91225 0.89532 0.74522 0.79705 0.85179 0.77522 1.15536 1.16337 0.82490 0.89934 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.76 101.05 1.09 1.21 16 2 S -0.25 -0.25 22.17 -107.50 -2.38 -2.63 16 3 C -0.08 0.12 4.28 -25.92 -0.11 0.01 16 4 H 0.11 -0.21 8.14 -51.93 -0.42 -0.64 16 5 C -0.12 0.24 7.22 -25.92 -0.19 0.05 16 6 C -0.11 0.36 3.79 -89.81 -0.34 0.02 16 7 H 0.10 -0.44 8.12 -51.93 -0.42 -0.86 16 8 C 0.13 -0.33 6.06 -4.04 -0.02 -0.35 16 9 N -1.11 2.52 6.00 -10.61 -0.06 2.45 16 10 S 2.71 2.08 5.80 -107.50 -0.62 1.46 16 11 O -0.96 -3.25 17.64 -57.17 -1.01 -4.26 16 12 O -0.95 -3.74 17.08 -57.17 -0.98 -4.72 16 13 C -0.69 0.03 5.87 -41.21 -0.24 -0.21 16 14 C -0.08 0.09 10.70 29.04 0.31 0.40 16 15 S 0.16 -0.23 20.60 -107.50 -2.21 -2.45 16 16 C -0.23 0.14 5.70 -36.00 -0.21 -0.06 16 17 C -0.03 0.04 2.96 36.01 0.11 0.14 16 18 O -0.52 0.06 12.88 -35.23 -0.45 -0.39 16 19 Si 0.65 -1.09 30.98 -169.99 -5.27 -6.35 16 20 C -0.04 -0.01 9.59 -41.21 -0.40 -0.40 16 21 C -0.10 0.24 7.23 -25.92 -0.19 0.06 16 22 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 23 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 24 H 0.10 -0.14 8.14 -51.93 -0.42 -0.56 16 25 H 0.10 -0.08 7.85 -51.93 -0.41 -0.49 16 26 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 27 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 28 H 0.09 -0.15 7.44 -51.93 -0.39 -0.54 16 29 H 0.42 -1.69 8.64 -34.47 -0.30 -1.99 16 30 H 0.19 -0.55 8.00 -52.49 -0.42 -0.97 16 31 H 0.13 -0.23 7.96 -51.93 -0.41 -0.65 16 32 H 0.38 -1.18 8.70 45.56 0.40 -0.78 16 33 H -0.23 -0.27 7.11 56.52 0.40 0.14 16 34 H -0.24 0.05 7.11 56.52 0.40 0.46 16 35 H 0.16 -0.01 7.96 -52.49 -0.42 -0.43 16 36 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 37 H 0.10 -0.17 8.06 -51.93 -0.42 -0.59 16 LS Contribution 351.26 15.07 5.29 5.29 Total: 0.00 -8.86 351.26 -12.83 -21.68 By element: Atomic # 1 Polarization: -5.99 SS G_CDS: -4.94 Total: -10.93 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -0.19 Total: 0.85 kcal Atomic # 7 Polarization: 2.52 SS G_CDS: -0.06 Total: 2.45 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -2.44 Total: -9.37 kcal Atomic # 14 Polarization: -1.09 SS G_CDS: -5.27 Total: -6.35 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -5.22 Total: -3.62 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -8.86 -12.83 -21.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.445 kcal (2) G-P(sol) polarization free energy of solvation -8.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds