Wall clock time and date at job start Mon Mar 8 2021 10:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81403 * 102.99905 * 2 1 4 4 H 1.09001 * 112.85063 * 316.19624 * 3 2 1 5 5 C 1.53786 * 113.61378 * 87.50117 * 3 2 1 6 6 C 1.53778 * 87.07963 * 139.97961 * 5 3 2 7 7 H 1.09005 * 113.69234 * 89.12996 * 6 5 3 8 8 C 1.53001 * 113.61642 * 220.01872 * 6 5 3 9 9 N 1.46498 * 109.47089 * 272.49774 * 8 6 5 10 10 S 1.65602 * 119.99612 * 164.71987 * 9 8 6 11 11 O 1.42104 * 106.40175 * 178.81816 * 10 9 8 12 12 O 1.42095 * 106.40656 * 311.73868 * 10 9 8 13 13 C 1.76203 * 107.21635 * 65.28001 * 10 9 8 14 14 C 1.33389 * 122.53640 * 90.02520 * 13 10 9 15 15 S 1.75888 * 109.59047 * 180.02562 * 14 13 10 16 16 C 1.75884 * 90.96938 * 359.97438 * 15 14 13 17 17 C 1.50706 * 125.20315 * 180.02562 * 16 15 14 18 18 O 1.42897 * 109.46985 * 245.02109 * 17 16 15 19 19 Si 1.86309 * 109.46919 * 5.02126 * 17 16 15 20 20 C 1.33387 * 109.59419 * 359.72994 * 16 15 14 21 21 C 1.53781 * 113.61390 * 184.99932 * 3 2 1 22 22 H 1.08994 * 109.47057 * 300.00012 * 1 2 3 23 23 H 1.09004 * 109.46757 * 59.99912 * 1 2 3 24 24 H 1.08996 * 109.46898 * 179.97438 * 1 2 3 25 25 H 1.08999 * 113.60973 * 25.43157 * 5 3 2 26 26 H 1.08995 * 113.61650 * 254.53119 * 5 3 2 27 27 H 1.08996 * 109.47377 * 152.49932 * 8 6 5 28 28 H 1.08999 * 109.46886 * 32.50070 * 8 6 5 29 29 H 0.97001 * 120.00384 * 345.00465 * 9 8 6 30 30 H 1.08002 * 125.20784 * 0.02562 * 14 13 10 31 31 H 1.08997 * 109.47184 * 125.02043 * 17 16 15 32 32 H 0.96708 * 113.99769 * 60.00113 * 18 17 16 33 33 H 1.48498 * 109.99748 * 180.02562 * 19 17 16 34 34 H 1.48505 * 109.99711 * 301.31881 * 19 17 16 35 35 H 1.08000 * 122.54289 * 180.24521 * 20 16 15 36 36 H 1.08998 * 113.61354 * 105.47403 * 21 3 2 37 37 H 1.09001 * 113.61270 * 334.56707 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3430 -0.6953 5 6 2.3008 2.3816 1.4077 6 6 3.5205 3.1738 0.9084 7 1 3.2658 4.1352 0.4624 8 6 4.6479 3.2766 1.9377 9 7 4.4202 4.4413 2.7967 10 16 5.2501 4.5941 4.2215 11 8 4.8327 5.8236 4.7991 12 8 5.1368 3.3443 4.8880 13 6 6.9535 4.7885 3.8147 14 6 7.5103 5.9831 3.6095 15 16 9.2151 5.7812 3.2269 16 6 9.0715 4.0342 3.3721 17 6 10.1962 3.0507 3.1746 18 8 9.9203 2.2342 2.0348 19 14 11.7903 3.9763 2.9043 20 6 7.8165 3.7134 3.6899 21 6 3.7283 2.0520 -0.1228 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 2.5394 1.6578 2.1870 26 1 1.4456 3.0090 1.6589 27 1 5.6018 3.3864 1.4221 28 1 4.6664 2.3734 2.5476 29 1 3.7803 5.1209 2.5328 30 1 6.9935 6.9295 3.6693 31 1 10.2874 2.4207 4.0594 32 1 9.8262 2.7295 1.2096 33 1 12.9072 3.0176 2.7076 34 1 11.6681 4.8629 1.7192 35 1 7.4967 2.6921 3.8347 36 1 4.0256 2.4135 -1.1072 37 1 4.3572 1.2382 0.2381 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18360574_15065232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:44 Heat of formation + Delta-G solvation = -43.165600 kcal Electronic energy + Delta-G solvation = -22425.593000 eV Core-core repulsion = 18936.539556 eV Total energy + Delta-G solvation = -3489.053444 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.036 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.10523 -39.50656 -38.39425 -37.65614 -37.03185 -35.72683 -31.84040 -29.88968 -28.75713 -27.20148 -26.67537 -24.94844 -23.98094 -21.47568 -20.89983 -19.97502 -19.20368 -18.56099 -18.00901 -17.86385 -17.45692 -16.83071 -16.62002 -16.39268 -15.86365 -15.48184 -15.36596 -15.17604 -14.87313 -14.38159 -14.24953 -14.20522 -14.08597 -13.85022 -13.50763 -13.44433 -13.37933 -13.32210 -13.21311 -12.97329 -12.87193 -12.51481 -12.32140 -11.86446 -11.58943 -11.57303 -11.39181 -10.81416 -10.79162 -10.47885 -10.21953 -9.82451 -8.70384 -5.07707 -0.78720 -0.46639 0.34697 0.59277 0.79091 0.98345 1.17698 1.48807 1.64629 1.85050 2.06842 2.67461 3.18949 3.32444 3.42016 3.47979 3.60834 3.67279 3.80813 3.91637 4.12876 4.21868 4.29089 4.30539 4.37025 4.47965 4.49163 4.63607 4.67684 4.78391 4.82860 4.84784 4.87226 4.90941 5.02779 5.04986 5.12272 5.44648 6.05313 6.38963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.318 6.318 3 C -0.075 4.075 4 H 0.116 0.884 5 C -0.128 4.128 6 C -0.100 4.100 7 H 0.123 0.877 8 C 0.122 3.878 9 N -1.102 6.102 10 S 2.726 3.274 11 O -0.984 6.984 12 O -0.985 6.985 13 C -0.693 4.693 14 C -0.085 4.085 15 S 0.188 5.812 16 C -0.230 4.230 17 C -0.041 4.041 18 O -0.538 6.538 19 Si 0.717 3.283 20 C -0.057 4.057 21 C -0.102 4.102 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.430 0.570 30 H 0.204 0.796 31 H 0.135 0.865 32 H 0.389 0.611 33 H -0.274 1.274 34 H -0.253 1.253 35 H 0.152 0.848 36 H 0.094 0.906 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 4.717 -3.977 6.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.090 6.090 3 C -0.203 4.203 4 H 0.134 0.866 5 C -0.168 4.168 6 C -0.121 4.121 7 H 0.141 0.859 8 C -0.004 4.004 9 N -0.865 5.865 10 S 2.814 3.186 11 O -0.974 6.974 12 O -0.975 6.975 13 C -0.794 4.794 14 C -0.224 4.224 15 S 0.451 5.549 16 C -0.348 4.348 17 C -0.153 4.153 18 O -0.346 6.346 19 Si 0.619 3.381 20 C -0.086 4.086 21 C -0.142 4.142 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.121 0.879 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.268 0.732 30 H 0.221 0.779 31 H 0.152 0.848 32 H 0.238 0.762 33 H -0.199 1.199 34 H -0.178 1.178 35 H 0.170 0.830 36 H 0.112 0.888 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.106 4.315 -3.558 6.398 hybrid contribution -2.354 -0.193 -1.093 2.603 sum 0.752 4.122 -4.651 6.260 Atomic orbital electron populations 1.23363 0.91925 1.06995 1.05630 1.87174 1.10272 1.13752 1.97783 1.24778 1.01714 0.91972 1.01841 0.86552 1.23423 0.99256 0.99144 0.94953 1.22675 0.94480 0.99404 0.95567 0.85870 1.21468 0.99568 0.87111 0.92217 1.55187 1.56492 1.33471 1.41375 1.00772 0.72920 0.72292 0.72612 1.93572 1.81704 1.46349 1.75789 1.93564 1.86253 1.45248 1.72453 1.29813 1.26910 0.99138 1.23569 1.26230 0.98872 1.01485 0.95778 1.84363 1.06357 1.00402 1.63731 1.25097 0.99919 0.97922 1.11883 1.24596 1.02085 0.96054 0.92554 1.86627 1.92758 1.36493 1.18738 0.94378 0.74700 0.81008 0.88057 1.19684 0.91711 0.99403 0.97795 1.22824 0.92696 0.97993 1.00678 0.89824 0.89621 0.87936 0.89726 0.89948 0.89722 0.90765 0.73233 0.77901 0.84793 0.76170 1.19944 1.17845 0.83026 0.88784 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.19 10.76 113.37 1.22 1.41 16 2 S -0.32 -0.94 22.17 -56.49 -1.25 -2.19 16 3 C -0.07 0.22 4.28 31.12 0.13 0.35 16 4 H 0.12 -0.58 8.14 -2.39 -0.02 -0.60 16 5 C -0.13 0.48 7.22 31.12 0.22 0.71 16 6 C -0.10 0.72 3.79 -10.27 -0.04 0.68 16 7 H 0.12 -1.34 8.12 -2.38 -0.02 -1.36 16 8 C 0.12 -0.66 6.06 86.38 0.52 -0.13 16 9 N -1.10 5.21 6.00 -187.50 -1.12 4.09 16 10 S 2.73 5.83 5.80 -56.49 -0.33 5.50 16 11 O -0.98 -7.09 17.64 -128.00 -2.26 -9.35 16 12 O -0.99 -9.29 17.08 -128.00 -2.19 -11.48 16 13 C -0.69 0.08 5.87 21.21 0.12 0.21 16 14 C -0.08 0.25 10.70 66.72 0.71 0.97 16 15 S 0.19 -0.77 20.60 -56.49 -1.16 -1.93 16 16 C -0.23 0.36 5.70 24.59 0.14 0.50 16 17 C -0.04 0.09 2.96 71.24 0.21 0.30 16 18 O -0.54 0.05 12.88 -148.98 -1.92 -1.87 16 19 Si 0.72 -2.53 30.98 68.60 2.13 -0.40 16 20 C -0.06 -0.03 9.59 21.21 0.20 0.17 16 21 C -0.10 0.52 7.23 31.12 0.23 0.74 16 22 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 23 H 0.08 -0.31 8.14 -2.39 -0.02 -0.33 16 24 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 25 H 0.08 -0.02 7.85 -2.39 -0.02 -0.04 16 26 H 0.08 -0.43 8.14 -2.39 -0.02 -0.45 16 27 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H 0.07 -0.18 7.44 -2.39 -0.02 -0.20 16 29 H 0.43 -3.83 8.64 -96.74 -0.84 -4.66 16 30 H 0.20 -1.48 8.00 -2.91 -0.02 -1.50 16 31 H 0.13 -0.45 7.96 -2.39 -0.02 -0.47 16 32 H 0.39 -2.48 8.70 -74.05 -0.64 -3.13 16 33 H -0.27 -0.91 7.11 99.48 0.71 -0.20 16 34 H -0.25 0.31 7.11 99.48 0.71 1.02 16 35 H 0.15 0.18 7.96 -2.91 -0.02 0.15 16 36 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.09 -0.24 8.06 -2.39 -0.02 -0.26 16 Total: 0.00 -20.89 351.26 -4.77 -25.65 By element: Atomic # 1 Polarization: -13.59 SS G_CDS: -0.34 Total: -13.93 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 3.68 Total: 5.90 kcal Atomic # 7 Polarization: 5.21 SS G_CDS: -1.12 Total: 4.09 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -6.36 Total: -22.69 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.13 Total: -0.40 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.74 Total: 1.38 kcal Total: -20.89 -4.77 -25.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_15065232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.512 kcal (2) G-P(sol) polarization free energy of solvation -20.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds