Wall clock time and date at job start Mon Mar 8 2021 10:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99754 * 2 1 4 4 H 1.09004 * 112.85234 * 316.19506 * 3 2 1 5 5 C 1.53781 * 113.61581 * 87.50409 * 3 2 1 6 6 C 1.53787 * 87.08009 * 139.97999 * 5 3 2 7 7 H 1.08995 * 113.61018 * 89.12069 * 6 5 3 8 8 C 1.53002 * 113.61066 * 220.01952 * 6 5 3 9 9 N 1.46495 * 109.47155 * 272.49519 * 8 6 5 10 10 S 1.65601 * 119.99762 * 165.00285 * 9 8 6 11 11 O 1.42102 * 106.40105 * 178.54625 * 10 9 8 12 12 O 1.42094 * 106.40594 * 311.46091 * 10 9 8 13 13 C 1.76199 * 107.21810 * 65.00605 * 10 9 8 14 14 C 1.33385 * 122.53848 * 95.99805 * 13 10 9 15 15 C 1.50697 * 125.20865 * 0.02562 * 14 13 10 16 16 S 1.75891 * 109.59094 * 179.90298 * 14 13 10 17 17 C 1.75883 * 90.97042 * 0.29996 * 16 14 13 18 18 C 1.50695 * 125.20595 * 179.79423 * 17 16 14 19 19 C 1.33393 * 109.59422 * 359.82767 * 17 16 14 20 20 C 1.50700 * 122.54313 * 179.97438 * 19 17 16 21 21 O 1.42906 * 109.46775 * 76.01322 * 20 19 17 22 22 Si 1.86298 * 109.47018 * 316.02123 * 20 19 17 23 23 C 1.53779 * 87.08128 * 334.56737 * 6 5 3 24 24 H 1.09005 * 109.46832 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46863 * 299.99463 * 1 2 3 26 26 H 1.09002 * 109.47715 * 60.00162 * 1 2 3 27 27 H 1.08994 * 113.61658 * 254.52689 * 5 3 2 28 28 H 1.08999 * 113.61047 * 25.43521 * 5 3 2 29 29 H 1.08996 * 109.47610 * 32.50300 * 8 6 5 30 30 H 1.09003 * 109.46702 * 152.50207 * 8 6 5 31 31 H 0.97004 * 120.00350 * 345.00564 * 9 8 6 32 32 H 1.08997 * 109.46957 * 84.33451 * 15 14 13 33 33 H 1.08994 * 109.47426 * 204.33503 * 15 14 13 34 34 H 1.09001 * 109.46897 * 324.33632 * 15 14 13 35 35 H 1.09007 * 109.47321 * 272.97135 * 18 17 16 36 36 H 1.09002 * 109.47470 * 32.96732 * 18 17 16 37 37 H 1.09001 * 109.47582 * 152.97288 * 18 17 16 38 38 H 1.08992 * 109.47616 * 196.01586 * 20 19 17 39 39 H 0.96708 * 113.99302 * 65.98251 * 21 20 19 40 40 H 1.48504 * 109.99973 * 174.64829 * 22 20 19 41 41 H 1.48501 * 110.00120 * 295.96158 * 22 20 19 42 42 H 1.08999 * 113.61623 * 270.88288 * 23 6 5 43 43 H 1.09000 * 113.61094 * 139.98139 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3430 -0.6953 5 6 2.3007 2.3816 1.4077 6 6 3.5205 3.1739 0.9082 7 1 3.2642 4.1348 0.4624 8 6 4.6479 3.2766 1.9376 9 7 4.4202 4.4413 2.7965 10 16 5.2552 4.5976 4.2180 11 8 4.8413 5.8294 4.7931 12 8 5.1426 3.3501 4.8889 13 6 6.9574 4.7885 3.8047 14 6 7.5425 5.9833 3.7078 15 6 6.8574 7.3069 3.9306 16 16 9.2370 5.7774 3.2834 17 6 9.0476 4.0291 3.2520 18 6 10.1416 3.0422 2.9355 19 6 7.7872 3.7102 3.5505 20 6 7.3032 2.2841 3.6061 21 8 7.7633 1.6717 4.8125 22 14 7.9678 1.3452 2.1406 23 6 3.7283 2.0520 -0.1229 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.4456 3.0090 1.6588 28 1 2.5395 1.6578 2.1870 29 1 4.6665 2.3735 2.5475 30 1 5.6018 3.3865 1.4218 31 1 3.7803 5.1209 2.5326 32 1 6.8509 7.5378 4.9958 33 1 7.3935 8.0886 3.3927 34 1 5.8322 7.2515 3.5646 35 1 10.1922 2.8892 1.8574 36 1 11.0956 3.4304 3.2924 37 1 9.9286 2.0932 3.4275 38 1 6.2136 2.2690 3.5835 39 1 7.3830 2.0518 5.6163 40 1 7.6057 -0.0908 2.2507 41 1 7.4188 1.9123 0.8827 42 1 4.3572 1.2382 0.2380 43 1 4.0255 2.4135 -1.1073 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18360574_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:47 Heat of formation + Delta-G solvation = -46.110058 kcal Electronic energy + Delta-G solvation = -27754.632580 eV Core-core repulsion = 23954.376217 eV Total energy + Delta-G solvation = -3800.256363 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.067 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.43628 -40.17272 -38.53656 -36.97869 -36.87819 -35.95279 -34.36435 -30.89464 -30.00033 -29.00763 -27.99811 -26.89506 -25.95746 -24.22366 -23.24794 -21.28811 -20.56359 -19.87953 -19.06613 -18.47964 -18.12292 -18.02117 -17.11435 -16.87959 -16.79171 -16.13360 -15.79364 -15.54364 -15.42156 -15.22551 -15.08839 -14.74422 -14.50155 -14.45107 -14.25867 -14.25478 -14.01099 -13.69563 -13.64528 -13.56115 -13.42884 -13.33944 -13.19789 -13.13159 -12.83147 -12.74768 -12.52396 -12.15056 -12.03109 -11.77565 -11.74254 -11.59435 -11.16682 -10.98758 -10.87743 -10.68146 -10.01897 -9.54874 -8.67482 -4.82669 -0.80726 -0.44384 0.36067 0.67478 0.70439 0.86877 1.36800 1.55015 1.60741 1.94093 2.01885 2.60601 3.12336 3.22982 3.25927 3.43327 3.44575 3.53354 3.70902 3.85016 3.90781 3.96154 4.03202 4.13288 4.15997 4.18692 4.20722 4.23493 4.36350 4.42537 4.44688 4.47798 4.55177 4.59398 4.60856 4.65804 4.73485 4.78472 4.83945 4.89628 4.92998 5.02673 5.18733 5.20600 5.73609 6.66489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.254 6.254 3 C -0.084 4.084 4 H 0.108 0.892 5 C -0.125 4.125 6 C -0.113 4.113 7 H 0.106 0.894 8 C 0.120 3.880 9 N -1.113 6.113 10 S 2.705 3.295 11 O -0.951 6.951 12 O -0.950 6.950 13 C -0.688 4.688 14 C -0.050 4.050 15 C -0.111 4.111 16 S 0.161 5.839 17 C -0.168 4.168 18 C -0.097 4.097 19 C -0.079 4.079 20 C -0.080 4.080 21 O -0.528 6.528 22 Si 0.703 3.297 23 C -0.105 4.105 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.421 0.579 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.372 0.628 40 H -0.240 1.240 41 H -0.241 1.241 42 H 0.093 0.907 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.487 3.112 -4.308 5.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.025 6.025 3 C -0.212 4.212 4 H 0.126 0.874 5 C -0.165 4.165 6 C -0.135 4.135 7 H 0.124 0.876 8 C -0.007 4.007 9 N -0.874 5.874 10 S 2.793 3.207 11 O -0.941 6.941 12 O -0.940 6.940 13 C -0.787 4.787 14 C -0.171 4.171 15 C -0.169 4.169 16 S 0.427 5.573 17 C -0.286 4.286 18 C -0.154 4.154 19 C -0.090 4.090 20 C -0.191 4.191 21 O -0.333 6.333 22 Si 0.600 3.400 23 C -0.145 4.145 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.256 0.744 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.221 0.779 40 H -0.164 1.164 41 H -0.165 1.165 42 H 0.112 0.888 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.314 2.175 -4.810 6.233 hybrid contribution -3.064 1.243 0.630 3.366 sum 0.250 3.418 -4.180 5.405 Atomic orbital electron populations 1.23373 0.93982 1.06679 1.04976 1.86989 1.07732 1.10190 1.97630 1.24670 1.00828 0.94484 1.01254 0.87423 1.23449 0.98213 0.99161 0.95652 1.22722 0.95424 0.99156 0.96168 0.87596 1.21549 0.98878 0.87783 0.92442 1.55492 1.56637 1.32968 1.42316 1.01613 0.72847 0.73699 0.72587 1.93611 1.81263 1.44593 1.74675 1.93568 1.85768 1.43742 1.70925 1.29518 1.27048 0.97907 1.24259 1.24587 0.97813 0.98003 0.96731 1.20915 1.01047 0.90141 1.04828 1.84408 1.06486 1.01233 1.65129 1.24399 0.98519 0.97272 1.08412 1.20400 0.95199 0.96764 1.03065 1.18627 0.92752 0.95592 1.01981 1.25640 1.02474 0.92607 0.98357 1.86644 1.70997 1.60830 1.14869 0.93147 0.93791 0.79500 0.73544 1.22825 0.93643 0.97950 1.00060 0.88018 0.90360 0.90472 0.90502 0.88209 0.89829 0.91212 0.74380 0.88156 0.90096 0.88403 0.89182 0.89379 0.88169 0.89669 0.77938 1.16438 1.16471 0.88832 0.89668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.11 10.76 101.05 1.09 1.19 16 2 S -0.25 -0.33 22.17 -107.50 -2.38 -2.71 16 3 C -0.08 0.08 4.28 -25.92 -0.11 -0.03 16 4 H 0.11 -0.20 8.14 -51.93 -0.42 -0.62 16 5 C -0.13 0.18 7.22 -25.92 -0.19 -0.01 16 6 C -0.11 0.26 3.79 -89.80 -0.34 -0.08 16 7 H 0.11 -0.41 8.12 -51.93 -0.42 -0.83 16 8 C 0.12 -0.13 5.17 -4.04 -0.02 -0.15 16 9 N -1.11 1.37 6.00 -10.62 -0.06 1.30 16 10 S 2.70 4.48 5.33 -107.50 -0.57 3.90 16 11 O -0.95 -3.15 14.84 -57.18 -0.85 -4.00 16 12 O -0.95 -3.82 14.54 -57.18 -0.83 -4.65 16 13 C -0.69 -0.96 5.86 -41.21 -0.24 -1.20 16 14 C -0.05 -0.03 6.50 -36.01 -0.23 -0.26 16 15 C -0.11 0.08 8.89 36.00 0.32 0.40 16 16 S 0.16 -0.07 23.31 -107.50 -2.51 -2.57 16 17 C -0.17 -0.03 6.11 -36.00 -0.22 -0.25 16 18 C -0.10 0.22 8.25 36.00 0.30 0.52 16 19 C -0.08 -0.11 4.72 -106.25 -0.50 -0.61 16 20 C -0.08 -0.16 1.89 36.01 0.07 -0.09 16 21 O -0.53 -1.46 12.33 -35.23 -0.43 -1.90 16 22 Si 0.70 0.38 27.17 -169.99 -4.62 -4.23 16 23 C -0.11 0.15 7.23 -25.92 -0.19 -0.03 16 24 H 0.10 -0.13 8.14 -51.92 -0.42 -0.55 16 25 H 0.08 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.08 -0.12 8.14 -51.92 -0.42 -0.55 16 27 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 28 H 0.10 -0.02 7.85 -51.93 -0.41 -0.43 16 29 H 0.08 -0.02 6.04 -51.93 -0.31 -0.34 16 30 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 31 H 0.42 -1.45 8.64 -34.47 -0.30 -1.75 16 32 H 0.10 -0.06 8.14 -51.93 -0.42 -0.48 16 33 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 34 H 0.10 -0.09 6.42 -51.93 -0.33 -0.42 16 35 H 0.09 -0.38 7.06 -51.92 -0.37 -0.75 16 36 H 0.09 -0.31 8.14 -51.93 -0.42 -0.73 16 37 H 0.10 -0.22 5.43 -51.93 -0.28 -0.50 16 38 H 0.09 0.19 2.72 -51.93 -0.14 0.04 16 39 H 0.37 0.59 8.99 45.56 0.41 1.00 16 40 H -0.24 -0.76 7.11 56.52 0.40 -0.36 16 41 H -0.24 -0.13 7.11 56.52 0.40 0.27 16 42 H 0.09 -0.05 8.06 -51.93 -0.42 -0.47 16 43 H 0.08 -0.19 8.14 -51.93 -0.42 -0.62 16 LS Contribution 370.87 15.07 5.59 5.59 Total: 0.00 -7.32 370.87 -12.92 -20.24 By element: Atomic # 1 Polarization: -4.38 SS G_CDS: -5.97 Total: -10.36 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.27 Total: -0.61 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -0.06 Total: 1.30 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -2.11 Total: -10.55 kcal Atomic # 14 Polarization: 0.38 SS G_CDS: -4.62 Total: -4.23 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -5.46 Total: -1.39 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -7.32 -12.92 -20.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.872 kcal (2) G-P(sol) polarization free energy of solvation -7.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds