Wall clock time and date at job start Mon Mar 8 2021 10:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 102.99754 * 2 1 4 4 H 1.09004 * 112.85234 * 316.19506 * 3 2 1 5 5 C 1.53781 * 113.61581 * 87.50409 * 3 2 1 6 6 C 1.53787 * 87.08009 * 139.97999 * 5 3 2 7 7 H 1.08995 * 113.61018 * 89.12069 * 6 5 3 8 8 C 1.53002 * 113.61066 * 220.01952 * 6 5 3 9 9 N 1.46495 * 109.47155 * 272.49519 * 8 6 5 10 10 S 1.65601 * 119.99762 * 165.00285 * 9 8 6 11 11 O 1.42102 * 106.40105 * 178.54625 * 10 9 8 12 12 O 1.42094 * 106.40594 * 311.46091 * 10 9 8 13 13 C 1.76199 * 107.21810 * 65.00605 * 10 9 8 14 14 C 1.33385 * 122.53848 * 95.99805 * 13 10 9 15 15 C 1.50697 * 125.20865 * 0.02562 * 14 13 10 16 16 S 1.75891 * 109.59094 * 179.90298 * 14 13 10 17 17 C 1.75883 * 90.97042 * 0.29996 * 16 14 13 18 18 C 1.50695 * 125.20595 * 179.79423 * 17 16 14 19 19 C 1.33393 * 109.59422 * 359.82767 * 17 16 14 20 20 C 1.50700 * 122.54313 * 179.97438 * 19 17 16 21 21 O 1.42906 * 109.46775 * 76.01322 * 20 19 17 22 22 Si 1.86298 * 109.47018 * 316.02123 * 20 19 17 23 23 C 1.53779 * 87.08128 * 334.56737 * 6 5 3 24 24 H 1.09005 * 109.46832 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46863 * 299.99463 * 1 2 3 26 26 H 1.09002 * 109.47715 * 60.00162 * 1 2 3 27 27 H 1.08994 * 113.61658 * 254.52689 * 5 3 2 28 28 H 1.08999 * 113.61047 * 25.43521 * 5 3 2 29 29 H 1.08996 * 109.47610 * 32.50300 * 8 6 5 30 30 H 1.09003 * 109.46702 * 152.50207 * 8 6 5 31 31 H 0.97004 * 120.00350 * 345.00564 * 9 8 6 32 32 H 1.08997 * 109.46957 * 84.33451 * 15 14 13 33 33 H 1.08994 * 109.47426 * 204.33503 * 15 14 13 34 34 H 1.09001 * 109.46897 * 324.33632 * 15 14 13 35 35 H 1.09007 * 109.47321 * 272.97135 * 18 17 16 36 36 H 1.09002 * 109.47470 * 32.96732 * 18 17 16 37 37 H 1.09001 * 109.47582 * 152.97288 * 18 17 16 38 38 H 1.08992 * 109.47616 * 196.01586 * 20 19 17 39 39 H 0.96708 * 113.99302 * 65.98251 * 21 20 19 40 40 H 1.48504 * 109.99973 * 174.64829 * 22 20 19 41 41 H 1.48501 * 110.00120 * 295.96158 * 22 20 19 42 42 H 1.08999 * 113.61623 * 270.88288 * 23 6 5 43 43 H 1.09000 * 113.61094 * 139.98139 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6108 2.3430 -0.6953 5 6 2.3007 2.3816 1.4077 6 6 3.5205 3.1739 0.9082 7 1 3.2642 4.1348 0.4624 8 6 4.6479 3.2766 1.9376 9 7 4.4202 4.4413 2.7965 10 16 5.2552 4.5976 4.2180 11 8 4.8413 5.8294 4.7931 12 8 5.1426 3.3501 4.8889 13 6 6.9574 4.7885 3.8047 14 6 7.5425 5.9833 3.7078 15 6 6.8574 7.3069 3.9306 16 16 9.2370 5.7774 3.2834 17 6 9.0476 4.0291 3.2520 18 6 10.1416 3.0422 2.9355 19 6 7.7872 3.7102 3.5505 20 6 7.3032 2.2841 3.6061 21 8 7.7633 1.6717 4.8125 22 14 7.9678 1.3452 2.1406 23 6 3.7283 2.0520 -0.1229 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.4456 3.0090 1.6588 28 1 2.5395 1.6578 2.1870 29 1 4.6665 2.3735 2.5475 30 1 5.6018 3.3865 1.4218 31 1 3.7803 5.1209 2.5326 32 1 6.8509 7.5378 4.9958 33 1 7.3935 8.0886 3.3927 34 1 5.8322 7.2515 3.5646 35 1 10.1922 2.8892 1.8574 36 1 11.0956 3.4304 3.2924 37 1 9.9286 2.0932 3.4275 38 1 6.2136 2.2690 3.5835 39 1 7.3830 2.0518 5.6163 40 1 7.6057 -0.0908 2.2507 41 1 7.4188 1.9123 0.8827 42 1 4.3572 1.2382 0.2380 43 1 4.0255 2.4135 -1.1073 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18360574_15065288.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:46 Heat of formation + Delta-G solvation = -45.135503 kcal Electronic energy + Delta-G solvation = -27754.590320 eV Core-core repulsion = 23954.376217 eV Total energy + Delta-G solvation = -3800.214103 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.067 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.39918 -40.13454 -38.70383 -37.16647 -37.02503 -35.91440 -34.31336 -30.79789 -29.93442 -28.94252 -28.04085 -26.78524 -25.90846 -24.14889 -23.27199 -21.24623 -20.56327 -19.91879 -19.11085 -18.52278 -18.21641 -18.01765 -17.17425 -16.87827 -16.73140 -16.19413 -15.85009 -15.49878 -15.44536 -15.21603 -15.11596 -14.74613 -14.42722 -14.31673 -14.20010 -14.16262 -14.09903 -13.61908 -13.56433 -13.53339 -13.44485 -13.43323 -13.37616 -13.08621 -12.85663 -12.70510 -12.49585 -12.23939 -11.97529 -11.76327 -11.70623 -11.49260 -11.25058 -11.11184 -10.86644 -10.63235 -9.98076 -9.53171 -8.76467 -4.89604 -0.88273 -0.44920 0.39226 0.67614 0.73159 0.83388 1.27229 1.53449 1.59108 1.90194 1.93989 2.51605 3.08278 3.30192 3.35499 3.47298 3.54030 3.65256 3.72635 3.79915 3.97958 4.00936 4.06850 4.18544 4.26265 4.27284 4.27936 4.31044 4.48402 4.53245 4.55579 4.64999 4.68703 4.71103 4.73187 4.74009 4.81811 4.90982 4.91884 4.99318 5.06840 5.09250 5.28404 5.32420 5.92093 6.51592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.320 6.320 3 C -0.071 4.071 4 H 0.123 0.877 5 C -0.128 4.128 6 C -0.101 4.101 7 H 0.131 0.869 8 C 0.114 3.886 9 N -1.101 6.101 10 S 2.713 3.287 11 O -0.972 6.972 12 O -0.981 6.981 13 C -0.696 4.696 14 C -0.060 4.060 15 C -0.117 4.117 16 S 0.192 5.808 17 C -0.170 4.170 18 C -0.106 4.106 19 C -0.097 4.097 20 C -0.096 4.096 21 O -0.539 6.539 22 Si 0.759 3.241 23 C -0.108 4.108 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.432 0.568 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.374 0.626 40 H -0.285 1.285 41 H -0.235 1.235 42 H 0.079 0.921 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 4.682 -5.629 7.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 S -0.092 6.092 3 C -0.200 4.200 4 H 0.141 0.859 5 C -0.167 4.167 6 C -0.122 4.122 7 H 0.149 0.851 8 C -0.012 4.012 9 N -0.865 5.865 10 S 2.802 3.198 11 O -0.962 6.962 12 O -0.971 6.971 13 C -0.797 4.797 14 C -0.181 4.181 15 C -0.175 4.175 16 S 0.458 5.542 17 C -0.288 4.288 18 C -0.163 4.163 19 C -0.107 4.107 20 C -0.205 4.205 21 O -0.345 6.345 22 Si 0.658 3.342 23 C -0.148 4.148 24 H 0.121 0.879 25 H 0.102 0.898 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.270 0.730 32 H 0.114 0.886 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.222 0.778 40 H -0.212 1.212 41 H -0.159 1.159 42 H 0.098 0.902 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.877 3.777 -6.116 8.167 hybrid contribution -3.234 0.738 1.060 3.482 sum 0.643 4.514 -5.056 6.808 Atomic orbital electron populations 1.23368 0.91551 1.07083 1.05747 1.87212 1.10643 1.13554 1.97782 1.24742 1.01242 0.92208 1.01768 0.85941 1.23426 0.99154 0.99089 0.95061 1.22719 0.94282 0.99877 0.95357 0.85134 1.21624 0.99869 0.87177 0.92511 1.55200 1.56542 1.33292 1.41441 1.01089 0.73105 0.72666 0.72924 1.93578 1.81831 1.45113 1.75668 1.93532 1.86357 1.44918 1.72264 1.29389 1.26645 0.98449 1.25242 1.24813 0.98679 0.98156 0.96488 1.21018 1.01368 0.90200 1.04899 1.84276 1.05259 1.00356 1.64289 1.24775 0.98604 0.98330 1.07077 1.20617 0.95004 0.95988 1.04699 1.18576 0.93477 0.95057 1.03608 1.25899 1.02402 0.93714 0.98508 1.86606 1.71200 1.61367 1.15373 0.92606 0.93015 0.75927 0.72667 1.22863 0.93180 0.97837 1.00925 0.87866 0.89772 0.89420 0.89345 0.89966 0.91213 0.90490 0.72976 0.88560 0.88022 0.88411 0.86816 0.87762 0.88424 0.90404 0.77780 1.21195 1.15939 0.90246 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.17 10.76 113.37 1.22 1.39 16 2 S -0.32 -1.19 22.17 -56.49 -1.25 -2.44 16 3 C -0.07 0.15 4.28 31.12 0.13 0.28 16 4 H 0.12 -0.61 8.14 -2.39 -0.02 -0.63 16 5 C -0.13 0.34 7.22 31.12 0.22 0.57 16 6 C -0.10 0.53 3.79 -10.27 -0.04 0.49 16 7 H 0.13 -1.29 8.12 -2.39 -0.02 -1.31 16 8 C 0.11 -0.22 5.17 86.38 0.45 0.23 16 9 N -1.10 2.41 6.00 -187.50 -1.12 1.28 16 10 S 2.71 11.98 5.33 -56.49 -0.30 11.68 16 11 O -0.97 -7.36 14.84 -128.00 -1.90 -9.26 16 12 O -0.98 -9.92 14.54 -128.00 -1.86 -11.78 16 13 C -0.70 -2.25 5.86 21.22 0.12 -2.13 16 14 C -0.06 -0.05 6.50 24.59 0.16 0.11 16 15 C -0.12 0.21 8.89 71.23 0.63 0.85 16 16 S 0.19 -0.38 23.31 -56.49 -1.32 -1.69 16 17 C -0.17 0.06 6.11 24.59 0.15 0.21 16 18 C -0.11 0.62 8.25 71.23 0.59 1.20 16 19 C -0.10 -0.31 4.72 -20.92 -0.10 -0.40 16 20 C -0.10 -0.49 1.89 71.24 0.13 -0.36 16 21 O -0.54 -3.93 12.33 -148.98 -1.84 -5.76 16 22 Si 0.76 1.33 27.17 68.60 1.86 3.20 16 23 C -0.11 0.33 7.23 31.12 0.23 0.55 16 24 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 25 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 26 H 0.09 -0.33 8.14 -2.39 -0.02 -0.34 16 27 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.08 0.09 7.85 -2.39 -0.02 0.08 16 29 H 0.07 0.08 6.04 -2.39 -0.01 0.07 16 30 H 0.08 -0.25 7.69 -2.39 -0.02 -0.27 16 31 H 0.43 -3.15 8.64 -96.74 -0.84 -3.98 16 32 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H 0.10 -0.19 6.42 -2.39 -0.02 -0.20 16 35 H 0.11 -1.18 7.06 -2.38 -0.02 -1.20 16 36 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.10 -0.47 5.43 -2.39 -0.01 -0.49 16 38 H 0.08 0.49 2.72 -2.39 -0.01 0.49 16 39 H 0.37 2.05 8.99 -74.05 -0.67 1.39 16 40 H -0.29 -2.51 7.11 99.48 0.71 -1.81 16 41 H -0.24 -0.15 7.11 99.48 0.71 0.55 16 42 H 0.08 0.01 8.06 -2.39 -0.02 -0.01 16 43 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 Total: 0.00 -18.46 370.87 -4.23 -22.69 By element: Atomic # 1 Polarization: -10.50 SS G_CDS: -0.40 Total: -10.91 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 3.90 Total: 2.99 kcal Atomic # 7 Polarization: 2.41 SS G_CDS: -1.12 Total: 1.28 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -5.60 Total: -26.81 kcal Atomic # 14 Polarization: 1.33 SS G_CDS: 1.86 Total: 3.20 kcal Atomic # 16 Polarization: 10.42 SS G_CDS: -2.87 Total: 7.55 kcal Total: -18.46 -4.23 -22.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_15065288.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.441 kcal (2) G-P(sol) polarization free energy of solvation -18.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds