Wall clock time and date at job start Mon Mar 8 2021 10:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81400 * 103.00186 * 2 1 4 4 H 1.08995 * 112.85076 * 45.33664 * 3 2 1 5 5 C 1.53786 * 113.61522 * 176.52925 * 3 2 1 6 6 C 1.53777 * 87.07954 * 140.06170 * 5 3 2 7 7 H 1.09002 * 113.60873 * 89.12164 * 6 5 3 8 8 C 1.52997 * 113.61465 * 219.93348 * 6 5 3 9 9 N 1.46501 * 109.47188 * 185.00691 * 8 6 5 10 10 S 1.65598 * 120.00255 * 164.33703 * 9 8 6 11 11 O 1.42104 * 106.40173 * 178.32677 * 10 9 8 12 12 O 1.42098 * 106.40220 * 311.24182 * 10 9 8 13 13 C 1.76201 * 107.21935 * 64.78479 * 10 9 8 14 14 C 1.38210 * 119.99667 * 64.59028 * 13 10 9 15 15 C 1.50699 * 120.00444 * 359.97438 * 14 13 10 16 16 O 1.42901 * 109.47247 * 284.45905 * 15 14 13 17 17 Si 1.86305 * 109.47366 * 164.45437 * 15 14 13 18 18 C 1.38257 * 119.99809 * 180.02562 * 14 13 10 19 19 C 1.38214 * 119.99989 * 359.97438 * 18 14 13 20 20 C 1.38251 * 120.00153 * 359.95427 * 19 18 14 21 21 C 1.38222 * 119.99618 * 359.85439 * 20 19 18 22 22 C 1.53774 * 87.08631 * 334.56838 * 6 5 3 23 23 H 1.09001 * 109.46916 * 59.99560 * 1 2 3 24 24 H 1.08995 * 109.47375 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46740 * 300.00248 * 1 2 3 26 26 H 1.08991 * 113.61468 * 254.61631 * 5 3 2 27 27 H 1.09004 * 113.61420 * 25.43440 * 5 3 2 28 28 H 1.09003 * 109.47018 * 305.00151 * 8 6 5 29 29 H 1.08998 * 109.47346 * 65.00399 * 8 6 5 30 30 H 0.97003 * 119.99766 * 344.33028 * 9 8 6 31 31 H 1.09007 * 109.46985 * 44.45722 * 15 14 13 32 32 H 0.96700 * 113.99638 * 299.99648 * 16 15 14 33 33 H 1.48500 * 109.99662 * 58.68213 * 17 15 14 34 34 H 1.48499 * 110.00064 * 180.02562 * 17 15 14 35 35 H 1.07999 * 120.00168 * 179.97438 * 18 14 13 36 36 H 1.08002 * 119.99869 * 179.97438 * 19 18 14 37 37 H 1.07997 * 120.00544 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.99635 * 180.20584 * 21 20 19 39 39 H 1.08998 * 113.61684 * 270.88552 * 22 6 5 40 40 H 1.09003 * 113.61909 * 139.97630 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6294 2.3388 0.7144 5 6 3.7311 2.0513 0.0853 6 6 3.4963 3.1806 -0.9317 7 1 3.2520 4.1383 -0.4720 8 6 4.5972 3.2925 -1.9883 9 7 4.3469 4.4636 -2.8322 10 16 5.5520 5.0610 -3.7981 11 8 4.9907 6.1558 -4.5093 12 8 6.7048 5.1778 -2.9755 13 6 5.9201 3.8244 -4.9981 14 6 4.9650 3.4568 -5.9269 15 6 3.6085 4.1131 -5.9130 16 8 2.8360 3.5877 -4.8317 17 14 2.7363 3.7705 -7.5233 18 6 5.2536 2.4860 -6.8681 19 6 6.4975 1.8837 -6.8805 20 6 7.4535 2.2524 -5.9524 21 6 7.1662 3.2257 -5.0139 22 6 2.2639 2.3920 -1.4047 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.0541 2.4054 1.0642 27 1 4.3503 1.2397 -0.2968 28 1 5.5638 3.3996 -1.4959 29 1 4.6013 2.3941 -2.6054 30 1 3.4751 4.8889 -2.8253 31 1 3.7268 5.1892 -5.7857 32 1 2.6905 2.6329 -4.8799 33 1 2.5971 2.3057 -7.7238 34 1 1.3975 4.4130 -7.5224 35 1 4.5071 2.1984 -7.5936 36 1 6.7228 1.1251 -7.6155 37 1 8.4256 1.7821 -5.9622 38 1 7.9141 3.5162 -4.2909 39 1 2.4819 1.6741 -2.1954 40 1 1.4023 3.0211 -1.6286 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18360574_2726874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:15:50 Heat of formation + Delta-G solvation = -41.328537 kcal Electronic energy + Delta-G solvation = -25034.349247 eV Core-core repulsion = 21456.223217 eV Total energy + Delta-G solvation = -3578.126029 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 330.079 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.68971 -40.07412 -38.56304 -37.62383 -37.03784 -35.59226 -32.81307 -32.37644 -29.89161 -28.70032 -26.93619 -26.65109 -24.41577 -23.96604 -22.77854 -20.92813 -20.35387 -19.25668 -18.53490 -18.07188 -17.80306 -17.09803 -16.83231 -16.67116 -16.32426 -15.98223 -15.85320 -15.56668 -15.27218 -15.04831 -14.99212 -14.36757 -14.19336 -14.14897 -13.85898 -13.55707 -13.50128 -13.42249 -13.30688 -13.27957 -13.27125 -12.90347 -12.86801 -12.36691 -11.97088 -11.83952 -11.56164 -11.47867 -11.26921 -10.77375 -10.67839 -10.44772 -10.37426 -10.04898 -8.69976 -4.92703 -0.66123 -0.27233 0.14845 0.78552 1.22411 1.53741 1.63811 1.90455 1.95595 2.38429 2.66554 3.29088 3.35380 3.43961 3.48340 3.49686 3.69365 3.79356 3.85538 4.00125 4.13982 4.25512 4.27602 4.28299 4.30086 4.40360 4.52012 4.53322 4.62472 4.71572 4.80443 4.83800 4.84003 4.85210 4.91069 5.01739 5.06392 5.15092 5.18375 5.31534 5.45682 5.77111 6.15063 6.45837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.309 6.309 3 C -0.078 4.078 4 H 0.109 0.891 5 C -0.104 4.104 6 C -0.102 4.102 7 H 0.108 0.892 8 C 0.132 3.868 9 N -1.088 6.088 10 S 2.705 3.295 11 O -0.987 6.987 12 O -0.993 6.993 13 C -0.666 4.666 14 C -0.016 4.016 15 C -0.140 4.140 16 O -0.520 6.520 17 Si 0.770 3.230 18 C -0.148 4.148 19 C -0.055 4.055 20 C -0.137 4.137 21 C -0.037 4.037 22 C -0.111 4.111 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.428 0.572 31 H 0.136 0.864 32 H 0.387 0.613 33 H -0.260 1.260 34 H -0.297 1.297 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.156 0.844 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.275 -4.276 -2.896 5.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.080 6.080 3 C -0.207 4.207 4 H 0.127 0.873 5 C -0.144 4.144 6 C -0.124 4.124 7 H 0.126 0.874 8 C 0.005 3.995 9 N -0.852 5.852 10 S 2.797 3.203 11 O -0.978 6.978 12 O -0.983 6.983 13 C -0.755 4.755 14 C -0.018 4.018 15 C -0.249 4.249 16 O -0.328 6.328 17 Si 0.673 3.327 18 C -0.166 4.166 19 C -0.072 4.072 20 C -0.155 4.155 21 C -0.057 4.057 22 C -0.150 4.150 23 H 0.103 0.897 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.109 0.891 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.266 0.734 31 H 0.154 0.846 32 H 0.237 0.763 33 H -0.185 1.185 34 H -0.225 1.225 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.174 0.826 38 H 0.161 0.839 39 H 0.115 0.885 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.739 -4.195 -2.975 5.196 hybrid contribution -1.420 -0.152 0.764 1.620 sum -2.160 -4.347 -2.211 5.334 Atomic orbital electron populations 1.23361 0.92194 1.06940 1.05553 1.87079 1.09909 1.13232 1.97805 1.24770 1.01340 0.92213 1.02351 0.87321 1.22827 0.92946 0.98044 1.00561 1.22608 0.95203 0.98823 0.95737 0.87409 1.21337 0.99173 0.87175 0.91769 1.54974 1.29363 1.43919 1.56904 1.01184 0.72595 0.73306 0.73229 1.93515 1.78589 1.51806 1.73854 1.93540 1.50637 1.86248 1.67896 1.30525 1.02932 1.22928 1.19076 1.19960 0.94481 0.94304 0.93038 1.25869 0.91106 1.03511 1.04372 1.86625 1.72626 1.28929 1.44602 0.93462 0.79453 0.79747 0.80025 1.21568 0.98980 0.96903 0.99149 1.21866 0.91965 0.96828 0.96585 1.21700 1.01377 0.97371 0.95099 1.21234 0.94060 0.93039 0.97345 1.23308 0.98431 0.98648 0.94638 0.89712 0.87887 0.89997 0.89626 0.89073 0.90664 0.90583 0.73428 0.84622 0.76327 1.18524 1.22477 0.82926 0.81970 0.82594 0.83896 0.88524 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.30 10.76 113.37 1.22 1.52 16 2 S -0.31 -0.49 22.18 -56.49 -1.25 -1.74 16 3 C -0.08 0.22 4.27 31.12 0.13 0.36 16 4 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 5 C -0.10 0.39 7.23 31.12 0.22 0.62 16 6 C -0.10 0.53 3.78 -10.27 -0.04 0.49 16 7 H 0.11 -0.62 8.14 -2.39 -0.02 -0.64 16 8 C 0.13 -0.45 6.07 86.38 0.52 0.07 16 9 N -1.09 1.10 4.27 -187.49 -0.80 0.30 16 10 S 2.70 14.35 5.07 -56.49 -0.29 14.07 16 11 O -0.99 -10.41 15.51 -128.00 -1.99 -12.40 16 12 O -0.99 -10.92 16.44 -128.00 -2.10 -13.02 16 13 C -0.67 -1.41 5.87 22.27 0.13 -1.28 16 14 C -0.02 0.01 5.25 -19.87 -0.10 -0.09 16 15 C -0.14 0.14 2.03 71.24 0.14 0.29 16 16 O -0.52 1.82 10.59 -148.98 -1.58 0.24 16 17 Si 0.77 -2.59 30.27 68.60 2.08 -0.51 16 18 C -0.15 0.60 8.66 22.27 0.19 0.79 16 19 C -0.05 0.30 10.05 22.27 0.22 0.52 16 20 C -0.14 0.47 10.05 22.27 0.22 0.70 16 21 C -0.04 -0.03 9.55 22.27 0.21 0.18 16 22 C -0.11 0.58 7.23 31.12 0.22 0.81 16 23 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 24 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 26 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.09 -0.26 8.06 -2.38 -0.02 -0.28 16 28 H 0.08 -0.15 7.74 -2.39 -0.02 -0.17 16 29 H 0.08 -0.42 7.85 -2.39 -0.02 -0.43 16 30 H 0.43 -1.22 8.16 -96.74 -0.79 -2.00 16 31 H 0.14 0.34 5.37 -2.38 -0.01 0.33 16 32 H 0.39 -3.55 8.70 -74.06 -0.64 -4.19 16 33 H -0.26 0.77 6.66 99.48 0.66 1.44 16 34 H -0.30 -1.29 7.11 99.48 0.71 -0.58 16 35 H 0.15 -1.18 4.87 -2.91 -0.01 -1.20 16 36 H 0.16 -1.80 8.06 -2.91 -0.02 -1.83 16 37 H 0.16 -1.26 8.06 -2.91 -0.02 -1.28 16 38 H 0.14 0.06 7.34 -2.91 -0.02 0.04 16 39 H 0.10 -0.49 7.86 -2.39 -0.02 -0.51 16 40 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: 0.00 -18.73 347.94 -2.99 -21.72 By element: Atomic # 1 Polarization: -13.26 SS G_CDS: -0.37 Total: -13.63 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 3.31 Total: 4.96 kcal Atomic # 7 Polarization: 1.10 SS G_CDS: -0.80 Total: 0.30 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -5.67 Total: -25.18 kcal Atomic # 14 Polarization: -2.59 SS G_CDS: 2.08 Total: -0.51 kcal Atomic # 16 Polarization: 13.87 SS G_CDS: -1.54 Total: 12.33 kcal Total: -18.73 -2.99 -21.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18360574_2726874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.607 kcal (2) G-P(sol) polarization free energy of solvation -18.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds