Wall clock time and date at job start Mon Mar 8 2021 10:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47268 * 2 1 4 4 C 1.53004 * 109.46899 * 240.00175 * 2 1 3 5 5 Si 1.86298 * 109.46939 * 120.00360 * 2 1 3 6 6 C 1.86299 * 109.47155 * 299.99991 * 5 2 1 7 7 C 1.86298 * 109.47207 * 179.97438 * 5 2 1 8 8 O 1.63099 * 109.47271 * 59.99880 * 5 2 1 9 9 C 1.42907 * 114.00058 * 179.97438 * 8 5 2 10 10 C 1.53495 * 114.20559 * 209.99477 * 9 8 5 11 11 N 1.47059 * 87.98669 * 220.34799 * 10 9 8 12 12 S 1.65608 * 136.05519 * 207.08940 * 11 10 9 13 13 O 1.42104 * 106.39724 * 203.53814 * 12 11 10 14 14 O 1.42097 * 106.40199 * 336.45725 * 12 11 10 15 15 C 1.76195 * 107.21632 * 89.99983 * 12 11 10 16 16 C 1.38239 * 120.00286 * 269.72172 * 15 12 11 17 17 C 1.38227 * 120.00279 * 179.79052 * 16 15 12 18 18 C 1.38234 * 120.00254 * 0.46621 * 17 16 15 19 19 C 1.50698 * 120.00207 * 179.79356 * 18 17 16 20 20 O 1.42898 * 109.47148 * 119.97962 * 19 18 17 21 21 Si 1.86300 * 109.47325 * 359.97290 * 19 18 17 22 22 H 1.48499 * 109.46783 * 60.00124 * 21 19 18 23 23 H 1.48495 * 109.46984 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47031 * 300.00565 * 21 19 18 25 25 C 1.38236 * 119.99761 * 359.76714 * 18 17 16 26 26 C 1.38238 * 120.00045 * 0.02562 * 25 18 17 27 27 C 1.47066 * 87.88539 * 27.34548 * 11 10 9 28 28 H 1.09003 * 109.47269 * 299.99924 * 1 2 3 29 29 H 1.08999 * 109.47053 * 59.99606 * 1 2 3 30 30 H 1.08995 * 109.47754 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46666 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47405 * 300.00178 * 3 2 1 33 33 H 1.08998 * 109.46643 * 60.00534 * 3 2 1 34 34 H 1.09002 * 109.46792 * 300.00260 * 4 2 1 35 35 H 1.08999 * 109.47089 * 60.00241 * 4 2 1 36 36 H 1.08994 * 109.46835 * 180.02562 * 4 2 1 37 37 H 1.09003 * 109.47367 * 180.02562 * 6 5 2 38 38 H 1.09009 * 109.46750 * 299.99605 * 6 5 2 39 39 H 1.08994 * 109.47127 * 59.99578 * 6 5 2 40 40 H 1.09003 * 109.47347 * 299.99928 * 7 5 2 41 41 H 1.09002 * 109.47264 * 59.99620 * 7 5 2 42 42 H 1.08999 * 109.47322 * 180.02562 * 7 5 2 43 43 H 1.08999 * 113.41349 * 343.19929 * 9 8 5 44 44 H 1.09000 * 113.46461 * 105.56610 * 10 9 8 45 45 H 1.09004 * 113.46973 * 335.12918 * 10 9 8 46 46 H 1.08001 * 119.99420 * 0.02562 * 16 15 12 47 47 H 1.07998 * 120.00044 * 180.25728 * 17 16 15 48 48 H 1.09008 * 109.46951 * 239.97608 * 19 18 17 49 49 H 0.96700 * 113.99958 * 299.99376 * 20 19 18 50 50 H 1.08004 * 120.00182 * 180.02562 * 25 18 17 51 51 H 1.07998 * 120.00137 * 179.97438 * 26 25 18 52 52 H 1.08993 * 113.46789 * 87.43696 * 27 11 10 53 53 H 1.09000 * 113.46381 * 217.87763 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1510 -0.8783 1.5211 6 6 1.5299 -0.0002 3.0422 7 6 4.0139 -0.8790 1.5208 8 8 1.6073 -2.4160 1.5210 9 6 2.0294 -3.1818 2.6513 10 6 2.1847 -4.6831 2.3718 11 7 1.5824 -4.9378 3.6891 12 16 1.6583 -6.1435 4.8218 13 8 0.4611 -6.0553 5.5823 14 8 2.0548 -7.3197 4.1300 15 6 2.9763 -5.7444 5.9208 16 6 4.2557 -6.1981 5.6595 17 6 5.2906 -5.8814 6.5194 18 6 5.0445 -5.1189 7.6458 19 6 6.1718 -4.7775 8.5858 20 8 6.3138 -3.3578 8.6635 21 14 7.7561 -5.5264 7.9533 22 1 8.0555 -4.9843 6.6036 23 1 8.8668 -5.1905 8.8799 24 1 7.6085 -7.0018 7.8725 25 6 3.7642 -4.6692 7.9098 26 6 2.7301 -4.9824 7.0476 27 6 0.8782 -3.6537 3.5548 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4423 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1299 -0.7216 -1.2491 37 1 1.8936 -0.5138 3.9323 38 1 1.8934 1.0275 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3770 -1.3931 0.6308 41 1 4.3777 0.1485 1.5205 42 1 4.3773 -1.3933 2.4105 43 1 2.8687 -2.7377 3.1864 44 1 3.2233 -5.0060 2.2996 45 1 1.5744 -5.0353 1.5401 46 1 4.4473 -6.7970 4.7813 47 1 6.2908 -6.2324 6.3129 48 1 5.9520 -5.1755 9.5765 49 1 6.5108 -2.9352 7.8163 50 1 3.5719 -4.0731 8.7897 51 1 1.7298 -4.6314 7.2541 52 1 -0.0764 -3.7345 3.0349 53 1 0.8037 -3.0997 4.4905 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18362374_13421422.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:46:28 Heat of formation + Delta-G solvation = -129.909212 kcal Electronic energy + Delta-G solvation = -32824.423448 eV Core-core repulsion = 28527.103633 eV Total energy + Delta-G solvation = -4297.319814 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 387.154 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.72088 -40.69071 -38.48693 -37.70908 -37.11773 -36.78202 -36.47393 -33.05207 -32.23463 -29.38621 -29.00098 -28.68670 -27.79145 -27.34741 -27.22670 -26.95563 -24.14439 -23.06541 -22.27043 -20.35019 -20.10360 -19.37354 -18.62586 -18.32124 -18.10973 -17.37005 -16.86918 -16.32315 -16.08337 -16.04905 -15.85660 -15.66534 -15.48254 -15.17759 -14.99626 -14.80231 -14.65097 -14.58630 -14.16633 -14.03010 -13.97026 -13.90685 -13.48095 -13.40794 -13.33282 -13.30347 -13.18011 -13.10229 -13.04660 -12.89325 -12.87852 -12.76168 -12.64983 -12.51140 -12.33438 -12.19995 -11.94281 -11.72718 -11.67526 -11.63829 -11.39871 -11.19706 -10.68693 -10.33528 -10.24701 -10.17945 -10.16439 -10.00373 -0.94343 -0.42091 0.14848 1.09937 1.41924 1.44117 1.48464 1.82910 1.84735 1.88715 2.16963 2.32305 2.52509 2.62788 2.91211 3.40289 3.42914 3.49791 3.67813 3.69580 3.79531 4.00317 4.14211 4.17503 4.18000 4.23043 4.40554 4.43619 4.52048 4.59757 4.62698 4.70983 4.72447 4.77747 4.81509 4.81794 4.85592 4.86530 4.88004 4.88888 4.89973 4.92342 4.97246 5.06024 5.14743 5.15237 5.21439 5.27289 5.34594 5.40647 5.47223 5.50601 5.61956 5.66615 5.66865 5.72520 6.63420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.386 4.386 3 C -0.141 4.141 4 C -0.138 4.138 5 Si 1.318 2.682 6 C -0.518 4.518 7 C -0.518 4.518 8 O -0.615 6.615 9 C 0.077 3.923 10 C 0.117 3.883 11 N -1.047 6.047 12 S 2.735 3.265 13 O -0.979 6.979 14 O -0.979 6.979 15 C -0.677 4.677 16 C -0.022 4.022 17 C -0.152 4.152 18 C -0.062 4.062 19 C -0.085 4.085 20 O -0.546 6.546 21 Si 0.976 3.024 22 H -0.244 1.244 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.115 4.115 26 C -0.025 4.025 27 C 0.101 3.899 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.101 0.899 46 H 0.154 0.846 47 H 0.145 0.855 48 H 0.133 0.867 49 H 0.391 0.609 50 H 0.152 0.848 51 H 0.151 0.849 52 H 0.101 0.899 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 4.818 -0.472 6.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.428 4.428 3 C -0.199 4.199 4 C -0.195 4.195 5 Si 1.448 2.552 6 C -0.620 4.620 7 C -0.620 4.620 8 O -0.572 6.572 9 C 0.017 3.983 10 C -0.008 4.008 11 N -0.889 5.889 12 S 2.830 3.170 13 O -0.970 6.970 14 O -0.970 6.970 15 C -0.766 4.766 16 C -0.041 4.041 17 C -0.171 4.171 18 C -0.063 4.063 19 C -0.196 4.196 20 O -0.353 6.353 21 Si 0.800 3.200 22 H -0.167 1.167 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.133 4.133 26 C -0.044 4.044 27 C -0.024 4.024 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.143 0.857 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.171 0.829 47 H 0.162 0.838 48 H 0.150 0.850 49 H 0.241 0.759 50 H 0.170 0.830 51 H 0.169 0.831 52 H 0.119 0.881 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.099 3.252 -0.140 5.234 hybrid contribution 0.191 0.900 -0.117 0.928 sum 4.290 4.153 -0.258 5.976 Atomic orbital electron populations 1.21552 0.94325 1.01909 1.01707 1.25998 1.00363 1.02943 1.13475 1.21607 1.01271 0.94902 1.02077 1.21552 1.01042 1.00149 0.96739 0.76197 0.62575 0.52546 0.63867 1.27139 1.07098 1.09790 1.18010 1.27112 1.24968 1.05044 1.04848 1.85436 1.78760 1.46598 1.46453 1.23679 0.97022 0.91513 0.86038 1.23079 1.00563 0.93555 0.83564 1.59558 1.60722 1.37377 1.31201 1.00330 0.73247 0.71393 0.72043 1.93557 1.45420 1.86313 1.71701 1.93556 1.84370 1.45082 1.73948 1.30807 1.15426 1.15189 1.15143 1.21082 0.90411 0.93731 0.98870 1.21398 1.00259 1.00207 0.95203 1.20898 0.96386 0.94426 0.94590 1.25149 1.03531 0.87033 1.03852 1.86523 1.93843 1.17371 1.37557 0.85287 0.75386 0.79463 0.79902 1.16693 1.19895 1.18214 1.21361 0.91505 1.00030 1.00445 1.21197 1.00681 0.91620 0.90945 1.23408 0.97675 0.80181 1.01112 0.92046 0.93756 0.92229 0.91801 0.93465 0.91821 0.92206 0.93745 0.92035 0.90627 0.90608 0.90958 0.90963 0.90533 0.90656 0.85733 0.88031 0.88093 0.82878 0.83773 0.84982 0.75916 0.83040 0.83113 0.88063 0.88158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.25 7.85 71.98 0.56 0.82 16 2 C -0.39 1.23 0.53 -10.79 -0.01 1.22 16 3 C -0.14 0.47 7.85 71.98 0.56 1.03 16 4 C -0.14 0.27 7.85 71.98 0.56 0.84 16 5 Si 1.32 -8.61 8.24 68.60 0.57 -8.04 16 6 C -0.52 3.14 8.65 113.37 0.98 4.12 16 7 C -0.52 3.27 8.64 113.37 0.98 4.24 16 8 O -0.61 3.01 8.61 -148.98 -1.28 1.73 16 9 C 0.08 -0.50 3.92 31.02 0.12 -0.38 16 10 C 0.12 -0.53 8.57 83.17 0.71 0.18 16 11 N -1.05 1.28 4.23 -550.11 -2.33 -1.04 16 12 S 2.73 11.91 6.27 -56.49 -0.35 11.55 16 13 O -0.98 -9.91 17.28 -128.00 -2.21 -12.12 16 14 O -0.98 -9.78 17.28 -128.00 -2.21 -11.99 16 15 C -0.68 -0.73 5.97 22.27 0.13 -0.60 16 16 C -0.02 0.01 9.52 22.27 0.21 0.22 16 17 C -0.15 0.34 8.67 22.27 0.19 0.53 16 18 C -0.06 0.17 5.39 -19.87 -0.11 0.06 16 19 C -0.09 0.41 2.82 71.24 0.20 0.61 16 20 O -0.55 2.20 12.77 -148.98 -1.90 0.30 16 21 Si 0.98 -4.25 25.07 68.60 1.72 -2.53 16 22 H -0.24 1.27 7.11 99.48 0.71 1.98 16 23 H -0.27 0.09 7.11 99.48 0.71 0.79 16 24 H -0.26 0.69 7.11 99.48 0.71 1.40 16 25 C -0.11 0.24 9.61 22.27 0.21 0.45 16 26 C -0.03 0.01 9.52 22.27 0.21 0.22 16 27 C 0.10 -0.46 8.58 83.26 0.71 0.26 16 28 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 29 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 -0.10 7.97 -2.39 -0.02 -0.12 16 31 H 0.06 -0.31 7.79 -2.39 -0.02 -0.33 16 32 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.06 -0.30 7.79 -2.39 -0.02 -0.32 16 34 H 0.06 -0.11 7.97 -2.39 -0.02 -0.13 16 35 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 -0.22 7.79 -2.39 -0.02 -0.23 16 37 H 0.07 -0.57 7.96 -2.39 -0.02 -0.59 16 38 H 0.07 -0.45 7.79 -2.38 -0.02 -0.47 16 39 H 0.07 -0.37 7.79 -2.39 -0.02 -0.39 16 40 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 41 H 0.08 -0.47 7.79 -2.39 -0.02 -0.49 16 42 H 0.07 -0.60 7.31 -2.39 -0.02 -0.62 16 43 H 0.13 -1.41 6.50 -2.39 -0.02 -1.43 16 44 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 45 H 0.10 -0.44 8.14 -2.38 -0.02 -0.46 16 46 H 0.15 -0.44 7.61 -2.91 -0.02 -0.47 16 47 H 0.14 -0.80 4.88 -2.91 -0.01 -0.81 16 48 H 0.13 -0.83 7.96 -2.38 -0.02 -0.85 16 49 H 0.39 -4.20 8.70 -74.06 -0.64 -4.84 16 50 H 0.15 -0.72 8.06 -2.91 -0.02 -0.75 16 51 H 0.15 -0.38 7.62 -2.91 -0.02 -0.41 16 52 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 53 H 0.10 -0.81 8.14 -2.39 -0.02 -0.82 16 Total: 0.00 -20.04 436.87 -0.75 -20.78 By element: Atomic # 1 Polarization: -13.47 SS G_CDS: 1.00 Total: -12.47 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.26 Total: 13.84 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -2.33 Total: -1.04 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -7.61 Total: -22.09 kcal Atomic # 14 Polarization: -12.86 SS G_CDS: 2.29 Total: -10.57 kcal Atomic # 16 Polarization: 11.91 SS G_CDS: -0.35 Total: 11.55 kcal Total: -20.04 -0.75 -20.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18362374_13421422.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.125 kcal (2) G-P(sol) polarization free energy of solvation -20.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds