Wall clock time and date at job start Mon Mar 8 2021 10:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47426 * 2 1 4 4 C 1.53008 * 109.46653 * 240.00164 * 2 1 3 5 5 Si 1.86297 * 109.47253 * 120.00392 * 2 1 3 6 6 C 1.86300 * 109.47090 * 299.99829 * 5 2 1 7 7 C 1.86299 * 109.47211 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47126 * 59.99947 * 5 2 1 9 9 C 1.42897 * 114.00314 * 180.02562 * 8 5 2 10 10 C 1.53496 * 114.21131 * 210.00044 * 9 8 5 11 11 N 1.47065 * 87.98905 * 220.14362 * 10 9 8 12 12 S 1.65601 * 136.05980 * 207.08501 * 11 10 9 13 13 O 1.42099 * 106.39848 * 336.45311 * 12 11 10 14 14 O 1.42097 * 106.39909 * 203.53658 * 12 11 10 15 15 C 1.76192 * 107.21786 * 89.99525 * 12 11 10 16 16 C 1.33396 * 122.54284 * 293.26976 * 15 12 11 17 17 C 1.50695 * 125.19874 * 0.02562 * 16 15 12 18 18 O 1.42900 * 109.47417 * 244.20750 * 17 16 15 19 19 Si 1.86300 * 109.47006 * 124.20947 * 17 16 15 20 20 H 1.48500 * 109.47264 * 59.99916 * 19 17 16 21 21 H 1.48504 * 109.47411 * 299.99911 * 19 17 16 22 22 H 1.48502 * 109.47232 * 179.97438 * 19 17 16 23 23 S 1.75886 * 109.59489 * 180.26635 * 16 15 12 24 24 C 1.75889 * 90.96839 * 359.68638 * 23 16 15 25 25 C 1.33383 * 109.59560 * 0.31202 * 24 23 16 26 26 C 1.47074 * 87.88307 * 27.33666 * 11 10 9 27 27 H 1.09004 * 109.47297 * 299.99921 * 1 2 3 28 28 H 1.08997 * 109.47488 * 59.99664 * 1 2 3 29 29 H 1.09001 * 109.47501 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47518 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47062 * 300.00597 * 3 2 1 32 32 H 1.09004 * 109.46422 * 60.00153 * 3 2 1 33 33 H 1.08994 * 109.47297 * 299.99963 * 4 2 1 34 34 H 1.09001 * 109.46709 * 60.00553 * 4 2 1 35 35 H 1.09001 * 109.46895 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.46849 * 180.02562 * 6 5 2 37 37 H 1.08994 * 109.47031 * 300.00003 * 6 5 2 38 38 H 1.08994 * 109.46795 * 60.00187 * 6 5 2 39 39 H 1.08995 * 109.47433 * 300.00435 * 7 5 2 40 40 H 1.09008 * 109.46855 * 60.00029 * 7 5 2 41 41 H 1.08997 * 109.47446 * 179.97438 * 7 5 2 42 42 H 1.09006 * 113.28129 * 343.05875 * 9 8 5 43 43 H 1.09004 * 113.47321 * 105.35980 * 10 9 8 44 44 H 1.09006 * 113.51625 * 334.93005 * 10 9 8 45 45 H 1.08998 * 109.47567 * 4.21006 * 17 16 15 46 46 H 0.96695 * 113.99762 * 294.50367 * 18 17 16 47 47 H 1.07995 * 125.19785 * 180.02562 * 24 23 16 48 48 H 1.08002 * 122.53897 * 179.73429 * 25 24 23 49 49 H 1.08999 * 113.46527 * 87.44141 * 26 11 10 50 50 H 1.09002 * 113.46715 * 217.87770 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2494 5 14 2.1510 -0.8783 1.5210 6 6 1.5300 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6073 -2.4160 1.5210 9 6 2.0285 -3.1815 2.6517 10 6 2.1842 -4.6829 2.3728 11 7 1.5855 -4.9372 3.6918 12 16 1.6651 -6.1421 4.8251 13 8 2.0605 -7.3184 4.1329 14 8 0.4699 -6.0542 5.5886 15 6 2.9858 -5.7415 5.9204 16 6 4.2619 -5.7311 5.5321 17 6 4.7497 -6.0499 4.1424 18 8 5.5583 -7.2275 4.1797 19 14 5.7592 -4.6237 3.4962 20 1 6.9235 -4.3964 4.3894 21 1 4.9189 -3.3998 3.4573 22 1 6.2404 -4.9380 2.1269 23 16 5.2887 -5.2953 6.8920 24 6 3.8849 -5.1379 7.9400 25 6 2.7778 -5.4141 7.2492 26 6 0.8801 -3.6536 3.5586 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6765 -1.7489 -1.2494 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.8938 -0.5138 3.9322 37 1 1.8934 1.0274 3.0423 38 1 0.4401 -0.0002 3.0422 39 1 4.3770 -1.3929 0.6306 40 1 4.3777 0.1486 1.5205 41 1 4.3774 -1.3925 2.4108 42 1 2.8690 -2.7365 3.1844 43 1 3.2228 -5.0052 2.2980 44 1 1.5724 -5.0369 1.5429 45 1 3.8951 -6.2167 3.4867 46 1 6.3811 -7.1240 4.6771 47 1 3.9152 -4.8645 8.9843 48 1 1.7937 -5.3848 7.6931 49 1 -0.0758 -3.7353 3.0413 50 1 0.8077 -3.0990 4.4941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18362374_14772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:46:47 Heat of formation + Delta-G solvation = -118.435189 kcal Electronic energy + Delta-G solvation = -32506.046115 eV Core-core repulsion = 28298.376098 eV Total energy + Delta-G solvation = -4207.670017 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 393.110 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.97763 -39.63883 -38.35836 -37.69633 -36.93296 -36.88603 -36.70137 -32.06048 -29.63628 -29.21637 -28.86008 -27.94873 -27.69660 -27.47094 -27.08594 -24.59766 -22.69306 -21.62868 -20.48424 -19.80397 -19.39293 -18.89762 -18.66837 -18.12490 -17.51099 -16.96041 -16.26050 -16.15831 -15.99150 -15.72648 -15.70695 -15.31492 -15.11010 -14.98016 -14.85315 -14.77448 -14.57431 -14.34805 -14.14078 -13.79651 -13.71683 -13.57636 -13.43542 -13.38271 -13.22744 -13.17346 -13.13260 -13.02224 -13.00963 -12.93859 -12.78373 -12.61316 -12.48484 -12.43522 -12.35239 -11.88065 -11.80021 -11.69878 -11.57796 -11.44586 -11.07881 -10.49789 -10.41642 -10.23145 -10.17503 -9.84162 -0.94656 -0.62763 0.20947 0.52573 0.69065 0.98521 1.02574 1.15123 1.22702 1.55099 1.59330 1.88569 1.89759 2.28224 2.64197 2.91508 2.99477 3.19541 3.24089 3.42389 3.67457 3.79009 3.92640 4.03556 4.03640 4.12251 4.18975 4.33692 4.38000 4.43598 4.47032 4.52476 4.53609 4.60443 4.61272 4.64932 4.73458 4.74275 4.78182 4.81167 4.92406 5.02961 5.03091 5.03412 5.10490 5.13095 5.25839 5.30664 5.32829 5.41954 5.42642 5.49440 6.17087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.372 4.372 3 C -0.137 4.137 4 C -0.135 4.135 5 Si 1.277 2.723 6 C -0.510 4.510 7 C -0.515 4.515 8 O -0.602 6.602 9 C 0.068 3.932 10 C 0.121 3.879 11 N -1.047 6.047 12 S 2.729 3.271 13 O -0.932 6.932 14 O -0.940 6.940 15 C -0.668 4.668 16 C -0.099 4.099 17 C -0.078 4.078 18 O -0.510 6.510 19 Si 0.898 3.102 20 H -0.226 1.226 21 H -0.225 1.225 22 H -0.217 1.217 23 S 0.150 5.850 24 C -0.206 4.206 25 C -0.072 4.072 26 C 0.115 3.885 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.375 0.625 47 H 0.178 0.822 48 H 0.162 0.838 49 H 0.107 0.893 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 5.690 -0.062 6.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.416 4.416 3 C -0.195 4.195 4 C -0.192 4.192 5 Si 1.409 2.591 6 C -0.612 4.612 7 C -0.617 4.617 8 O -0.559 6.559 9 C 0.009 3.991 10 C -0.004 4.004 11 N -0.888 5.888 12 S 2.818 3.182 13 O -0.922 6.922 14 O -0.931 6.931 15 C -0.768 4.768 16 C -0.220 4.220 17 C -0.189 4.189 18 O -0.314 6.314 19 Si 0.714 3.286 20 H -0.148 1.148 21 H -0.148 1.148 22 H -0.139 1.139 23 S 0.414 5.586 24 C -0.342 4.342 25 C -0.100 4.100 26 C -0.010 4.010 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.131 0.869 45 H 0.146 0.854 46 H 0.222 0.778 47 H 0.196 0.804 48 H 0.179 0.821 49 H 0.125 0.875 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.369 5.235 -0.406 6.831 hybrid contribution -0.526 0.446 1.073 1.276 sum 3.843 5.682 0.667 6.892 Atomic orbital electron populations 1.21521 0.93650 1.02128 1.01898 1.25756 1.00802 1.02606 1.12475 1.21562 1.00761 0.94888 1.02241 1.21528 1.00613 1.00329 0.96764 0.76936 0.63184 0.53475 0.65512 1.27043 1.07285 1.09549 1.17327 1.27105 1.24958 1.05066 1.04590 1.85439 1.78480 1.46133 1.45895 1.23704 0.97174 0.91688 0.86571 1.23000 0.99094 0.93334 0.85010 1.59901 1.60386 1.37876 1.30598 1.01100 0.73282 0.71711 0.72114 1.93657 1.83687 1.42109 1.72747 1.93591 1.43214 1.85599 1.70665 1.29955 1.13982 1.20877 1.11955 1.25132 0.96429 0.99626 1.00818 1.25190 1.01749 0.99085 0.92913 1.86713 1.35253 1.32752 1.76687 0.86524 0.81189 0.76586 0.84347 1.14797 1.14795 1.13892 1.84339 1.10277 1.63617 1.00370 1.25810 0.94447 1.09673 1.04277 1.19754 1.00939 0.98656 0.90678 1.23161 0.97267 0.80497 1.00064 0.92645 0.92731 0.92019 0.92532 0.92408 0.92489 0.92005 0.92711 0.92694 0.91438 0.90601 0.90533 0.90538 0.90376 0.91545 0.87995 0.90816 0.86906 0.85380 0.77784 0.80427 0.82075 0.87544 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.17 7.85 37.15 0.29 0.46 16 2 C -0.37 0.62 0.53 -90.62 -0.05 0.57 16 3 C -0.14 0.24 7.85 37.16 0.29 0.53 16 4 C -0.14 0.17 7.85 37.16 0.29 0.47 16 5 Si 1.28 -3.23 8.24 -169.99 -1.40 -4.64 16 6 C -0.51 1.19 8.65 101.05 0.87 2.06 16 7 C -0.52 1.13 8.64 101.05 0.87 2.00 16 8 O -0.60 1.15 8.61 -35.23 -0.30 0.84 16 9 C 0.07 -0.15 3.92 -26.08 -0.10 -0.25 16 10 C 0.12 -0.18 8.07 -8.51 -0.07 -0.25 16 11 N -1.05 -0.07 4.15 -125.03 -0.52 -0.59 16 12 S 2.73 8.10 5.59 -107.50 -0.60 7.50 16 13 O -0.93 -5.28 16.31 -57.17 -0.93 -6.21 16 14 O -0.94 -4.82 17.34 -57.17 -0.99 -5.81 16 15 C -0.67 -1.16 5.84 -41.20 -0.24 -1.40 16 16 C -0.10 -0.09 4.95 -36.00 -0.18 -0.27 16 17 C -0.08 -0.04 2.64 36.00 0.10 0.06 16 18 O -0.51 -0.47 12.94 -35.23 -0.46 -0.93 16 19 Si 0.90 -1.36 25.81 -169.99 -4.39 -5.75 16 20 H -0.23 0.49 7.11 56.52 0.40 0.89 16 21 H -0.23 0.67 5.97 56.52 0.34 1.00 16 22 H -0.22 0.30 7.11 56.52 0.40 0.70 16 23 S 0.15 -0.11 22.31 -107.50 -2.40 -2.51 16 24 C -0.21 0.14 11.23 29.04 0.33 0.47 16 25 C -0.07 -0.05 9.69 -41.21 -0.40 -0.45 16 26 C 0.12 -0.21 8.59 -8.37 -0.07 -0.28 16 27 H 0.05 -0.10 7.79 -51.93 -0.40 -0.51 16 28 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 29 H 0.06 -0.08 7.97 -51.93 -0.41 -0.49 16 30 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 31 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 32 H 0.06 -0.13 7.79 -51.93 -0.40 -0.54 16 33 H 0.06 -0.08 7.96 -51.93 -0.41 -0.49 16 34 H 0.05 -0.04 8.14 -51.93 -0.42 -0.47 16 35 H 0.05 -0.10 7.79 -51.93 -0.40 -0.51 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.18 7.79 -51.93 -0.40 -0.59 16 38 H 0.08 -0.17 7.79 -51.93 -0.40 -0.57 16 39 H 0.08 -0.17 7.79 -51.93 -0.40 -0.57 16 40 H 0.08 -0.19 7.79 -51.92 -0.40 -0.60 16 41 H 0.07 -0.16 7.04 -51.93 -0.37 -0.53 16 42 H 0.10 -0.38 5.63 -51.93 -0.29 -0.68 16 43 H 0.07 -0.20 4.40 -51.93 -0.23 -0.43 16 44 H 0.11 -0.28 8.14 -51.93 -0.42 -0.71 16 45 H 0.13 0.09 3.38 -51.93 -0.18 -0.08 16 46 H 0.38 -1.18 8.60 45.56 0.39 -0.79 16 47 H 0.18 -0.57 8.06 -52.49 -0.42 -0.99 16 48 H 0.16 -0.04 7.74 -52.49 -0.41 -0.44 16 49 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 50 H 0.09 -0.30 8.14 -51.93 -0.42 -0.72 16 LS Contribution 417.70 15.07 6.29 6.29 Total: 0.00 -7.84 417.70 -11.13 -18.98 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: -7.37 Total: -10.90 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 1.93 Total: 3.72 kcal Atomic # 7 Polarization: -0.07 SS G_CDS: -0.52 Total: -0.59 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -2.68 Total: -12.10 kcal Atomic # 14 Polarization: -4.60 SS G_CDS: -5.79 Total: -10.39 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -3.00 Total: 4.99 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -7.84 -11.13 -18.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18362374_14772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.458 kcal (2) G-P(sol) polarization free energy of solvation -7.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds