Wall clock time and date at job start Mon Mar 8 2021 10:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47426 * 2 1 4 4 C 1.53008 * 109.46653 * 240.00164 * 2 1 3 5 5 Si 1.86297 * 109.47253 * 120.00392 * 2 1 3 6 6 C 1.86300 * 109.47090 * 299.99829 * 5 2 1 7 7 C 1.86299 * 109.47211 * 179.97438 * 5 2 1 8 8 O 1.63098 * 109.47126 * 59.99947 * 5 2 1 9 9 C 1.42897 * 114.00314 * 180.02562 * 8 5 2 10 10 C 1.53496 * 114.21131 * 210.00044 * 9 8 5 11 11 N 1.47065 * 87.98905 * 220.14362 * 10 9 8 12 12 S 1.65601 * 136.05980 * 207.08501 * 11 10 9 13 13 O 1.42099 * 106.39848 * 336.45311 * 12 11 10 14 14 O 1.42097 * 106.39909 * 203.53658 * 12 11 10 15 15 C 1.76192 * 107.21786 * 89.99525 * 12 11 10 16 16 C 1.33396 * 122.54284 * 293.26976 * 15 12 11 17 17 C 1.50695 * 125.19874 * 0.02562 * 16 15 12 18 18 O 1.42900 * 109.47417 * 244.20750 * 17 16 15 19 19 Si 1.86300 * 109.47006 * 124.20947 * 17 16 15 20 20 H 1.48500 * 109.47264 * 59.99916 * 19 17 16 21 21 H 1.48504 * 109.47411 * 299.99911 * 19 17 16 22 22 H 1.48502 * 109.47232 * 179.97438 * 19 17 16 23 23 S 1.75886 * 109.59489 * 180.26635 * 16 15 12 24 24 C 1.75889 * 90.96839 * 359.68638 * 23 16 15 25 25 C 1.33383 * 109.59560 * 0.31202 * 24 23 16 26 26 C 1.47074 * 87.88307 * 27.33666 * 11 10 9 27 27 H 1.09004 * 109.47297 * 299.99921 * 1 2 3 28 28 H 1.08997 * 109.47488 * 59.99664 * 1 2 3 29 29 H 1.09001 * 109.47501 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47518 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47062 * 300.00597 * 3 2 1 32 32 H 1.09004 * 109.46422 * 60.00153 * 3 2 1 33 33 H 1.08994 * 109.47297 * 299.99963 * 4 2 1 34 34 H 1.09001 * 109.46709 * 60.00553 * 4 2 1 35 35 H 1.09001 * 109.46895 * 179.97438 * 4 2 1 36 36 H 1.09006 * 109.46849 * 180.02562 * 6 5 2 37 37 H 1.08994 * 109.47031 * 300.00003 * 6 5 2 38 38 H 1.08994 * 109.46795 * 60.00187 * 6 5 2 39 39 H 1.08995 * 109.47433 * 300.00435 * 7 5 2 40 40 H 1.09008 * 109.46855 * 60.00029 * 7 5 2 41 41 H 1.08997 * 109.47446 * 179.97438 * 7 5 2 42 42 H 1.09006 * 113.28129 * 343.05875 * 9 8 5 43 43 H 1.09004 * 113.47321 * 105.35980 * 10 9 8 44 44 H 1.09006 * 113.51625 * 334.93005 * 10 9 8 45 45 H 1.08998 * 109.47567 * 4.21006 * 17 16 15 46 46 H 0.96695 * 113.99762 * 294.50367 * 18 17 16 47 47 H 1.07995 * 125.19785 * 180.02562 * 24 23 16 48 48 H 1.08002 * 122.53897 * 179.73429 * 25 24 23 49 49 H 1.08999 * 113.46527 * 87.44141 * 26 11 10 50 50 H 1.09002 * 113.46715 * 217.87770 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2494 5 14 2.1510 -0.8783 1.5210 6 6 1.5300 -0.0002 3.0422 7 6 4.0140 -0.8790 1.5206 8 8 1.6073 -2.4160 1.5210 9 6 2.0285 -3.1815 2.6517 10 6 2.1842 -4.6829 2.3728 11 7 1.5855 -4.9372 3.6918 12 16 1.6651 -6.1421 4.8251 13 8 2.0605 -7.3184 4.1329 14 8 0.4699 -6.0542 5.5886 15 6 2.9858 -5.7415 5.9204 16 6 4.2619 -5.7311 5.5321 17 6 4.7497 -6.0499 4.1424 18 8 5.5583 -7.2275 4.1797 19 14 5.7592 -4.6237 3.4962 20 1 6.9235 -4.3964 4.3894 21 1 4.9189 -3.3998 3.4573 22 1 6.2404 -4.9380 2.1269 23 16 5.2887 -5.2953 6.8920 24 6 3.8849 -5.1379 7.9400 25 6 2.7778 -5.4141 7.2492 26 6 0.8801 -3.6536 3.5586 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6765 -1.7489 -1.2494 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 1.8938 -0.5138 3.9322 37 1 1.8934 1.0274 3.0423 38 1 0.4401 -0.0002 3.0422 39 1 4.3770 -1.3929 0.6306 40 1 4.3777 0.1486 1.5205 41 1 4.3774 -1.3925 2.4108 42 1 2.8690 -2.7365 3.1844 43 1 3.2228 -5.0052 2.2980 44 1 1.5724 -5.0369 1.5429 45 1 3.8951 -6.2167 3.4867 46 1 6.3811 -7.1240 4.6771 47 1 3.9152 -4.8645 8.9843 48 1 1.7937 -5.3848 7.6931 49 1 -0.0758 -3.7353 3.0413 50 1 0.8077 -3.0990 4.4941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18362374_14772022.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:46:45 Heat of formation + Delta-G solvation = -116.880203 kcal Electronic energy + Delta-G solvation = -32505.978685 eV Core-core repulsion = 28298.376098 eV Total energy + Delta-G solvation = -4207.602588 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 393.110 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.84434 -39.62754 -38.59829 -37.71568 -37.17669 -36.79000 -36.55265 -32.03291 -29.43453 -29.02575 -28.77393 -27.79656 -27.62660 -27.33611 -26.96844 -24.58189 -22.60910 -21.60508 -20.34275 -19.86728 -19.37150 -18.93824 -18.51307 -18.11414 -17.51875 -17.05317 -16.13474 -16.08276 -15.91043 -15.67905 -15.63306 -15.32054 -15.04905 -14.84357 -14.74042 -14.66869 -14.55673 -14.23003 -13.95163 -13.75909 -13.54306 -13.47902 -13.40940 -13.35769 -13.26345 -13.17552 -13.10727 -12.97703 -12.89654 -12.87311 -12.74468 -12.60212 -12.34615 -12.32111 -12.14500 -11.75072 -11.65689 -11.64992 -11.42630 -11.26494 -11.01234 -10.36446 -10.26616 -10.19231 -10.02109 -9.78561 -1.06290 -0.63884 0.25032 0.58337 0.78646 0.99317 1.21290 1.31608 1.41268 1.71706 1.78857 1.88151 2.11945 2.46202 2.51378 2.87210 3.06771 3.30089 3.34434 3.56478 3.83797 3.89824 4.03870 4.17152 4.17744 4.20726 4.30358 4.48042 4.50582 4.56899 4.64545 4.69636 4.76145 4.77916 4.83077 4.84940 4.85372 4.86129 4.87769 4.89164 5.05286 5.06230 5.14954 5.15467 5.23406 5.26438 5.40087 5.47169 5.48963 5.55497 5.64127 5.70306 6.38675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.381 4.381 3 C -0.142 4.142 4 C -0.139 4.139 5 Si 1.302 2.698 6 C -0.517 4.517 7 C -0.524 4.524 8 O -0.609 6.609 9 C 0.070 3.930 10 C 0.109 3.891 11 N -1.049 6.049 12 S 2.738 3.262 13 O -0.970 6.970 14 O -0.973 6.973 15 C -0.677 4.677 16 C -0.110 4.110 17 C -0.095 4.095 18 O -0.531 6.531 19 Si 0.905 3.095 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.223 1.223 23 S 0.185 5.815 24 C -0.202 4.202 25 C -0.092 4.092 26 C 0.106 3.894 27 H 0.061 0.939 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.122 0.878 43 H 0.084 0.916 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.390 0.610 47 H 0.204 0.796 48 H 0.164 0.836 49 H 0.110 0.890 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 7.040 0.800 8.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.423 4.423 3 C -0.199 4.199 4 C -0.196 4.196 5 Si 1.433 2.567 6 C -0.619 4.619 7 C -0.626 4.626 8 O -0.566 6.566 9 C 0.010 3.990 10 C -0.016 4.016 11 N -0.891 5.891 12 S 2.830 3.170 13 O -0.961 6.961 14 O -0.963 6.963 15 C -0.780 4.780 16 C -0.232 4.232 17 C -0.204 4.204 18 O -0.338 6.338 19 Si 0.717 3.283 20 H -0.134 1.134 21 H -0.123 1.123 22 H -0.145 1.145 23 S 0.449 5.551 24 C -0.338 4.338 25 C -0.120 4.120 26 C -0.018 4.018 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.140 0.860 43 H 0.102 0.898 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.239 0.761 47 H 0.221 0.779 48 H 0.181 0.819 49 H 0.128 0.872 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.760 6.580 0.443 8.756 hybrid contribution -0.940 0.027 0.789 1.228 sum 4.820 6.607 1.232 8.270 Atomic orbital electron populations 1.21558 0.94217 1.01996 1.01775 1.25916 1.00425 1.02900 1.13103 1.21612 1.01314 0.94818 1.02144 1.21568 1.01108 1.00214 0.96716 0.76482 0.62891 0.52781 0.64512 1.27104 1.07257 1.09822 1.17728 1.27174 1.24967 1.05502 1.04974 1.85427 1.78714 1.46483 1.46025 1.23757 0.97496 0.91255 0.86443 1.23258 0.99839 0.94122 0.84358 1.59623 1.60942 1.37853 1.30712 1.00330 0.73007 0.71590 0.72066 1.93603 1.84179 1.44659 1.73637 1.93539 1.45025 1.86242 1.71519 1.29730 1.13754 1.22331 1.12160 1.25315 0.96606 0.99509 1.01750 1.25515 1.02155 1.00024 0.92746 1.86666 1.36263 1.33662 1.77177 0.86459 0.81456 0.76273 0.84095 1.13409 1.12334 1.14466 1.84193 1.09349 1.62479 0.99047 1.26175 0.94015 1.08240 1.05389 1.19861 1.01727 0.99865 0.90549 1.23416 0.97619 0.79625 1.01147 0.92029 0.93634 0.92152 0.91748 0.93342 0.91810 0.92120 0.93610 0.91970 0.90698 0.90412 0.90721 0.90514 0.89979 0.90851 0.86049 0.89798 0.86434 0.86403 0.76079 0.77937 0.81906 0.87151 0.87817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.29 7.85 71.98 0.56 0.86 16 2 C -0.38 1.28 0.53 -10.79 -0.01 1.27 16 3 C -0.14 0.52 7.85 71.98 0.56 1.08 16 4 C -0.14 0.32 7.85 71.98 0.56 0.88 16 5 Si 1.30 -7.83 8.24 68.60 0.57 -7.27 16 6 C -0.52 3.04 8.65 113.37 0.98 4.02 16 7 C -0.52 3.14 8.64 113.37 0.98 4.12 16 8 O -0.61 2.73 8.61 -148.98 -1.28 1.45 16 9 C 0.07 -0.35 3.92 31.01 0.12 -0.23 16 10 C 0.11 -0.30 8.07 83.18 0.67 0.37 16 11 N -1.05 -0.88 4.15 -549.97 -2.28 -3.17 16 12 S 2.74 20.78 5.59 -56.49 -0.32 20.46 16 13 O -0.97 -13.33 16.31 -128.00 -2.09 -15.42 16 14 O -0.97 -11.92 17.34 -128.00 -2.22 -14.14 16 15 C -0.68 -2.77 5.84 21.22 0.12 -2.64 16 16 C -0.11 -0.20 4.95 24.59 0.12 -0.08 16 17 C -0.09 -0.11 2.64 71.23 0.19 0.07 16 18 O -0.53 -1.32 12.94 -148.98 -1.93 -3.25 16 19 Si 0.91 -3.84 25.81 68.60 1.77 -2.07 16 20 H -0.21 1.35 7.11 99.48 0.71 2.06 16 21 H -0.20 1.67 5.97 99.48 0.59 2.26 16 22 H -0.22 0.76 7.11 99.48 0.71 1.47 16 23 S 0.19 -0.51 22.31 -56.49 -1.26 -1.77 16 24 C -0.20 0.51 11.23 66.72 0.75 1.26 16 25 C -0.09 -0.15 9.69 21.22 0.21 0.06 16 26 C 0.11 -0.40 8.59 83.26 0.72 0.31 16 27 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 28 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.06 -0.12 7.97 -2.39 -0.02 -0.14 16 30 H 0.06 -0.34 7.79 -2.39 -0.02 -0.36 16 31 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.06 -0.33 7.79 -2.39 -0.02 -0.34 16 33 H 0.06 -0.13 7.96 -2.39 -0.02 -0.15 16 34 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 36 H 0.07 -0.54 7.96 -2.38 -0.02 -0.56 16 37 H 0.08 -0.47 7.79 -2.39 -0.02 -0.49 16 38 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 39 H 0.08 -0.44 7.79 -2.39 -0.02 -0.46 16 40 H 0.08 -0.54 7.79 -2.38 -0.02 -0.56 16 41 H 0.07 -0.53 7.04 -2.39 -0.02 -0.55 16 42 H 0.12 -1.13 5.63 -2.38 -0.01 -1.15 16 43 H 0.08 -0.43 4.40 -2.39 -0.01 -0.44 16 44 H 0.12 -0.51 8.14 -2.38 -0.02 -0.53 16 45 H 0.12 0.31 3.38 -2.39 -0.01 0.30 16 46 H 0.39 -2.38 8.60 -74.06 -0.64 -3.02 16 47 H 0.20 -1.70 8.06 -2.91 -0.02 -1.73 16 48 H 0.16 0.06 7.74 -2.91 -0.02 0.04 16 49 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 50 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 Total: 0.00 -19.07 417.70 -1.54 -20.61 By element: Atomic # 1 Polarization: -7.75 SS G_CDS: 0.95 Total: -6.79 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.55 Total: 11.36 kcal Atomic # 7 Polarization: -0.88 SS G_CDS: -2.28 Total: -3.17 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -7.52 Total: -31.37 kcal Atomic # 14 Polarization: -11.68 SS G_CDS: 2.34 Total: -9.34 kcal Atomic # 16 Polarization: 20.27 SS G_CDS: -1.58 Total: 18.69 kcal Total: -19.07 -1.54 -20.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18362374_14772022.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.266 kcal (2) G-P(sol) polarization free energy of solvation -19.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds