Wall clock time and date at job start Mon Mar 8 2021 10:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47500 * 2 1 4 4 C 1.52998 * 109.46975 * 239.99960 * 2 1 3 5 5 Si 1.86298 * 109.47178 * 120.00111 * 2 1 3 6 6 C 1.86301 * 109.47124 * 299.99885 * 5 2 1 7 7 C 1.86304 * 109.47279 * 179.97438 * 5 2 1 8 8 O 1.63106 * 109.47102 * 59.99720 * 5 2 1 9 9 C 1.42906 * 113.99861 * 179.97438 * 8 5 2 10 10 C 1.53500 * 114.20368 * 150.00114 * 9 8 5 11 11 N 1.47067 * 87.98376 * 139.85228 * 10 9 8 12 12 S 1.65599 * 136.05518 * 152.83928 * 11 10 9 13 13 O 1.42099 * 106.40256 * 336.46568 * 12 11 10 14 14 O 1.42096 * 106.40419 * 203.54118 * 12 11 10 15 15 C 1.76204 * 107.21327 * 90.00327 * 12 11 10 16 16 C 1.33390 * 122.53972 * 90.02540 * 15 12 11 17 17 S 1.75883 * 109.59206 * 179.97438 * 16 15 12 18 18 C 1.75882 * 90.97122 * 0.02562 * 17 16 15 19 19 C 1.50701 * 125.20214 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47079 * 245.02799 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 5.02294 * 19 18 17 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 C 1.33385 * 109.59501 * 0.22562 * 18 17 16 26 26 C 1.47066 * 87.88608 * 333.10115 * 11 10 9 27 27 H 1.09003 * 109.46555 * 300.00015 * 1 2 3 28 28 H 1.08997 * 109.47064 * 59.99637 * 1 2 3 29 29 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47205 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47259 * 300.00244 * 3 2 1 32 32 H 1.08999 * 109.46962 * 59.99704 * 3 2 1 33 33 H 1.09001 * 109.47014 * 299.99947 * 4 2 1 34 34 H 1.08997 * 109.47200 * 59.99847 * 4 2 1 35 35 H 1.09002 * 109.47394 * 180.02562 * 4 2 1 36 36 H 1.09005 * 109.46744 * 179.97438 * 6 5 2 37 37 H 1.08998 * 109.46893 * 299.99574 * 6 5 2 38 38 H 1.09002 * 109.47418 * 59.99955 * 6 5 2 39 39 H 1.09003 * 109.46666 * 300.00004 * 7 5 2 40 40 H 1.08998 * 109.46718 * 60.00195 * 7 5 2 41 41 H 1.09002 * 109.46745 * 180.02562 * 7 5 2 42 42 H 1.09001 * 113.28131 * 16.93461 * 9 8 5 43 43 H 1.08999 * 113.46891 * 25.07225 * 10 9 8 44 44 H 1.08998 * 113.46657 * 254.63779 * 10 9 8 45 45 H 1.08003 * 125.19975 * 0.02562 * 16 15 12 46 46 H 1.09001 * 109.47380 * 125.02195 * 19 18 17 47 47 H 0.96696 * 114.00435 * 59.99627 * 20 19 18 48 48 H 1.07997 * 122.53896 * 179.75112 * 25 18 17 49 49 H 1.08997 * 113.46897 * 141.67892 * 26 11 10 50 50 H 1.08996 * 113.46806 * 272.12104 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5211 9 6 2.0294 -3.1818 2.6514 10 6 1.0420 -4.2790 3.0725 11 7 2.1987 -5.1539 3.3165 12 16 2.5301 -6.4466 4.2969 13 8 1.6281 -6.3616 5.3916 14 8 3.9420 -6.4797 4.4539 15 6 2.0944 -7.9026 3.4052 16 6 2.9582 -8.5488 2.6206 17 16 2.1697 -9.9468 1.9014 18 6 0.6668 -9.5633 2.7306 19 6 -0.6100 -10.3570 2.6262 20 8 -1.6170 -9.5594 2.0004 21 14 -0.3083 -11.8876 1.6078 22 1 0.7382 -12.7166 2.2580 23 1 0.1439 -11.4964 0.2484 24 1 -1.5665 -12.6694 1.5044 25 6 0.8283 -8.4594 3.4616 26 6 2.9337 -4.3713 2.3114 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.8931 -0.5142 3.9322 37 1 1.8935 1.0276 3.0423 38 1 0.4400 0.0000 3.0423 39 1 4.3769 -1.3930 0.6307 40 1 4.3777 0.1486 1.5206 41 1 4.3773 -1.3932 2.4105 42 1 2.3942 -2.5684 3.4754 43 1 0.4020 -4.6222 2.2597 44 1 0.4830 -4.0363 3.9762 45 1 3.9849 -8.2584 2.4533 46 1 -0.9419 -10.6442 3.6240 47 1 -1.3887 -9.2674 1.1073 48 1 0.0325 -8.0339 4.0548 49 1 3.9799 -4.2069 2.5693 50 1 2.8026 -4.7393 1.2939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18362374_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:47:00 Heat of formation + Delta-G solvation = -125.876231 kcal Electronic energy + Delta-G solvation = -30965.522288 eV Core-core repulsion = 26757.529603 eV Total energy + Delta-G solvation = -4207.992685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 393.110 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.88141 -39.52583 -38.24585 -37.60331 -36.90859 -36.88718 -36.64029 -31.88249 -29.56560 -29.16085 -28.82103 -27.91904 -27.48342 -27.28656 -27.11329 -24.92715 -22.50425 -21.36316 -20.46335 -19.71410 -19.19870 -18.77501 -18.40490 -18.01280 -17.67276 -16.87529 -16.44933 -16.15979 -15.98833 -15.79350 -15.59324 -15.18438 -15.02614 -14.92544 -14.75378 -14.56347 -14.32286 -14.17530 -14.07780 -14.03088 -13.66262 -13.48992 -13.36282 -13.29178 -13.19164 -13.18501 -13.07729 -12.98851 -12.98747 -12.94146 -12.78093 -12.51324 -12.50139 -12.45828 -12.20250 -11.83580 -11.77089 -11.61447 -11.56108 -11.38333 -10.71635 -10.44128 -10.39303 -10.19373 -10.13090 -9.90227 -0.88856 -0.52097 0.23013 0.49456 0.95877 0.96228 1.25433 1.29639 1.36797 1.64823 1.75703 1.90619 1.95152 2.34223 2.72726 2.95037 3.23142 3.31964 3.51532 3.53177 3.75438 3.78076 4.05673 4.05989 4.08713 4.25192 4.38402 4.40323 4.40879 4.47339 4.51912 4.54026 4.62225 4.67461 4.68015 4.69605 4.76024 4.79870 4.80720 4.86641 4.94234 5.03318 5.04665 5.05216 5.13739 5.19305 5.28729 5.35670 5.36570 5.44481 5.48914 5.54509 6.33626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.375 4.375 3 C -0.137 4.137 4 C -0.134 4.134 5 Si 1.284 2.716 6 C -0.512 4.512 7 C -0.511 4.511 8 O -0.605 6.605 9 C 0.078 3.922 10 C 0.123 3.877 11 N -1.038 6.038 12 S 2.735 3.265 13 O -0.940 6.940 14 O -0.945 6.945 15 C -0.691 4.691 16 C -0.079 4.079 17 S 0.140 5.860 18 C -0.228 4.228 19 C -0.040 4.040 20 O -0.530 6.530 21 Si 0.895 3.105 22 H -0.234 1.234 23 H -0.234 1.234 24 H -0.224 1.224 25 C -0.040 4.040 26 C 0.106 3.894 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.186 0.814 46 H 0.130 0.870 47 H 0.378 0.622 48 H 0.159 0.841 49 H 0.090 0.910 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.166 1.068 -4.270 4.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.418 4.418 3 C -0.194 4.194 4 C -0.191 4.191 5 Si 1.416 2.584 6 C -0.614 4.614 7 C -0.614 4.614 8 O -0.563 6.563 9 C 0.018 3.982 10 C -0.002 4.002 11 N -0.878 5.878 12 S 2.823 3.177 13 O -0.930 6.930 14 O -0.936 6.936 15 C -0.790 4.790 16 C -0.219 4.219 17 S 0.405 5.595 18 C -0.346 4.346 19 C -0.153 4.153 20 O -0.336 6.336 21 Si 0.714 3.286 22 H -0.157 1.157 23 H -0.157 1.157 24 H -0.146 1.146 25 C -0.068 4.068 26 C -0.020 4.020 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.203 0.797 46 H 0.148 0.852 47 H 0.225 0.775 48 H 0.177 0.823 49 H 0.108 0.892 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.336 -1.327 -4.396 4.604 hybrid contribution -0.074 1.515 0.188 1.528 sum 0.262 0.188 -4.208 4.220 Atomic orbital electron populations 1.21518 0.93745 1.02038 1.01861 1.25787 1.00731 1.02664 1.12634 1.21557 1.00798 0.94886 1.02200 1.21515 1.00622 1.00207 0.96784 0.76808 0.63200 0.53274 0.65110 1.27056 1.07191 1.09587 1.17568 1.27069 1.24742 1.04890 1.04649 1.85435 1.78181 1.46370 1.46312 1.23339 0.95972 0.91117 0.87735 1.22916 0.89281 0.85954 1.02066 1.59976 1.25926 1.45417 1.56487 1.00947 0.73365 0.71002 0.72350 1.93607 1.66226 1.85804 1.47393 1.93604 1.29164 1.86297 1.84522 1.30215 1.02485 1.25891 1.20394 1.25832 1.03102 0.96829 0.96100 1.84496 1.03650 1.26363 1.45037 1.25058 0.99798 1.03319 1.06388 1.24397 0.85098 1.00732 1.05072 1.86560 1.41179 1.71922 1.33897 0.86280 0.83722 0.78040 0.80529 1.15667 1.15663 1.14641 1.19616 0.94984 0.94398 0.97829 1.23129 0.97650 0.88313 0.92886 0.92652 0.92800 0.92104 0.92492 0.92483 0.92489 0.92153 0.92804 0.92672 0.91371 0.90603 0.90677 0.90742 0.90636 0.91318 0.87868 0.88190 0.89019 0.79717 0.85239 0.77484 0.82347 0.89186 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.16 7.85 37.16 0.29 0.45 16 2 C -0.37 0.59 0.53 -90.62 -0.05 0.54 16 3 C -0.14 0.21 7.85 37.16 0.29 0.50 16 4 C -0.13 0.17 7.85 37.16 0.29 0.46 16 5 Si 1.28 -3.28 8.24 -169.99 -1.40 -4.68 16 6 C -0.51 0.96 8.64 101.05 0.87 1.83 16 7 C -0.51 1.08 8.65 101.05 0.87 1.95 16 8 O -0.61 1.23 8.62 -35.23 -0.30 0.92 16 9 C 0.08 -0.18 3.89 -26.35 -0.10 -0.28 16 10 C 0.12 -0.25 8.58 -8.50 -0.07 -0.32 16 11 N -1.04 0.72 4.24 -125.35 -0.53 0.19 16 12 S 2.73 4.84 6.33 -107.50 -0.68 4.16 16 13 O -0.94 -4.24 17.64 -57.17 -1.01 -5.25 16 14 O -0.95 -3.83 17.64 -57.17 -1.01 -4.84 16 15 C -0.69 -0.61 5.89 -41.21 -0.24 -0.85 16 16 C -0.08 0.01 10.70 29.04 0.31 0.32 16 17 S 0.14 -0.05 20.60 -107.50 -2.21 -2.27 16 18 C -0.23 -0.03 5.70 -36.00 -0.21 -0.24 16 19 C -0.04 0.04 2.96 36.01 0.11 0.14 16 20 O -0.53 0.31 12.88 -35.23 -0.45 -0.15 16 21 Si 0.90 -0.99 26.26 -169.99 -4.46 -5.45 16 22 H -0.23 0.09 7.11 56.52 0.40 0.49 16 23 H -0.23 0.27 7.11 56.52 0.40 0.67 16 24 H -0.22 0.04 7.11 56.52 0.40 0.44 16 25 C -0.04 -0.04 9.59 -41.21 -0.40 -0.43 16 26 C 0.11 -0.24 8.57 -8.64 -0.07 -0.31 16 27 H 0.05 -0.09 7.79 -51.93 -0.40 -0.49 16 28 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.06 -0.07 7.96 -51.93 -0.41 -0.49 16 30 H 0.06 -0.12 7.79 -51.93 -0.40 -0.53 16 31 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 32 H 0.06 -0.12 7.79 -51.93 -0.40 -0.52 16 33 H 0.06 -0.08 7.97 -51.93 -0.41 -0.50 16 34 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 35 H 0.05 -0.10 7.79 -51.93 -0.40 -0.50 16 36 H 0.07 -0.14 7.31 -51.93 -0.38 -0.52 16 37 H 0.07 -0.14 7.79 -51.93 -0.40 -0.55 16 38 H 0.07 -0.12 7.79 -51.93 -0.40 -0.53 16 39 H 0.07 -0.15 7.79 -51.93 -0.40 -0.56 16 40 H 0.07 -0.16 7.79 -51.93 -0.40 -0.56 16 41 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 42 H 0.10 -0.38 6.49 -51.93 -0.34 -0.72 16 43 H 0.10 -0.30 8.14 -51.93 -0.42 -0.73 16 44 H 0.09 -0.23 8.14 -51.93 -0.42 -0.66 16 45 H 0.19 -0.41 8.00 -52.48 -0.42 -0.83 16 46 H 0.13 -0.23 7.96 -51.93 -0.41 -0.64 16 47 H 0.38 -1.46 8.70 45.56 0.40 -1.06 16 48 H 0.16 0.08 7.97 -52.49 -0.42 -0.34 16 49 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 50 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 LS Contribution 430.64 15.07 6.49 6.49 Total: 0.00 -8.16 430.64 -11.48 -19.64 By element: Atomic # 1 Polarization: -4.75 SS G_CDS: -7.80 Total: -12.55 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 1.90 Total: 3.77 kcal Atomic # 7 Polarization: 0.72 SS G_CDS: -0.53 Total: 0.19 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -2.77 Total: -9.31 kcal Atomic # 14 Polarization: -4.27 SS G_CDS: -5.86 Total: -10.13 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.89 Total: 1.89 kcal Total LS contribution 6.49 Total: 6.49 kcal Total: -8.16 -11.48 -19.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18362374_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.232 kcal (2) G-P(sol) polarization free energy of solvation -8.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds