Wall clock time and date at job start Mon Mar 8 2021 10:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47500 * 2 1 4 4 C 1.52998 * 109.46975 * 239.99960 * 2 1 3 5 5 Si 1.86298 * 109.47178 * 120.00111 * 2 1 3 6 6 C 1.86301 * 109.47124 * 299.99885 * 5 2 1 7 7 C 1.86304 * 109.47279 * 179.97438 * 5 2 1 8 8 O 1.63106 * 109.47102 * 59.99720 * 5 2 1 9 9 C 1.42906 * 113.99861 * 179.97438 * 8 5 2 10 10 C 1.53500 * 114.20368 * 150.00114 * 9 8 5 11 11 N 1.47067 * 87.98376 * 139.85228 * 10 9 8 12 12 S 1.65599 * 136.05518 * 152.83928 * 11 10 9 13 13 O 1.42099 * 106.40256 * 336.46568 * 12 11 10 14 14 O 1.42096 * 106.40419 * 203.54118 * 12 11 10 15 15 C 1.76204 * 107.21327 * 90.00327 * 12 11 10 16 16 C 1.33390 * 122.53972 * 90.02540 * 15 12 11 17 17 S 1.75883 * 109.59206 * 179.97438 * 16 15 12 18 18 C 1.75882 * 90.97122 * 0.02562 * 17 16 15 19 19 C 1.50701 * 125.20214 * 179.97438 * 18 17 16 20 20 O 1.42895 * 109.47079 * 245.02799 * 19 18 17 21 21 Si 1.86301 * 109.47149 * 5.02294 * 19 18 17 22 22 H 1.48506 * 109.47302 * 59.99966 * 21 19 18 23 23 H 1.48503 * 109.47334 * 300.00099 * 21 19 18 24 24 H 1.48500 * 109.47376 * 180.02562 * 21 19 18 25 25 C 1.33385 * 109.59501 * 0.22562 * 18 17 16 26 26 C 1.47066 * 87.88608 * 333.10115 * 11 10 9 27 27 H 1.09003 * 109.46555 * 300.00015 * 1 2 3 28 28 H 1.08997 * 109.47064 * 59.99637 * 1 2 3 29 29 H 1.09001 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47205 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47259 * 300.00244 * 3 2 1 32 32 H 1.08999 * 109.46962 * 59.99704 * 3 2 1 33 33 H 1.09001 * 109.47014 * 299.99947 * 4 2 1 34 34 H 1.08997 * 109.47200 * 59.99847 * 4 2 1 35 35 H 1.09002 * 109.47394 * 180.02562 * 4 2 1 36 36 H 1.09005 * 109.46744 * 179.97438 * 6 5 2 37 37 H 1.08998 * 109.46893 * 299.99574 * 6 5 2 38 38 H 1.09002 * 109.47418 * 59.99955 * 6 5 2 39 39 H 1.09003 * 109.46666 * 300.00004 * 7 5 2 40 40 H 1.08998 * 109.46718 * 60.00195 * 7 5 2 41 41 H 1.09002 * 109.46745 * 180.02562 * 7 5 2 42 42 H 1.09001 * 113.28131 * 16.93461 * 9 8 5 43 43 H 1.08999 * 113.46891 * 25.07225 * 10 9 8 44 44 H 1.08998 * 113.46657 * 254.63779 * 10 9 8 45 45 H 1.08003 * 125.19975 * 0.02562 * 16 15 12 46 46 H 1.09001 * 109.47380 * 125.02195 * 19 18 17 47 47 H 0.96696 * 114.00435 * 59.99627 * 20 19 18 48 48 H 1.07997 * 122.53896 * 179.75112 * 25 18 17 49 49 H 1.08997 * 113.46897 * 141.67892 * 26 11 10 50 50 H 1.08996 * 113.46806 * 272.12104 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 14 2.1510 -0.8782 1.5211 6 6 1.5300 0.0000 3.0423 7 6 4.0140 -0.8789 1.5207 8 8 1.6073 -2.4160 1.5211 9 6 2.0294 -3.1818 2.6514 10 6 1.0420 -4.2790 3.0725 11 7 2.1987 -5.1539 3.3165 12 16 2.5301 -6.4466 4.2969 13 8 1.6281 -6.3616 5.3916 14 8 3.9420 -6.4797 4.4539 15 6 2.0944 -7.9026 3.4052 16 6 2.9582 -8.5488 2.6206 17 16 2.1697 -9.9468 1.9014 18 6 0.6668 -9.5633 2.7306 19 6 -0.6100 -10.3570 2.6262 20 8 -1.6170 -9.5594 2.0004 21 14 -0.3083 -11.8876 1.6078 22 1 0.7382 -12.7166 2.2580 23 1 0.1439 -11.4964 0.2484 24 1 -1.5665 -12.6694 1.5044 25 6 0.8283 -8.4594 3.4616 26 6 2.9337 -4.3713 2.3114 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2491 36 1 1.8931 -0.5142 3.9322 37 1 1.8935 1.0276 3.0423 38 1 0.4400 0.0000 3.0423 39 1 4.3769 -1.3930 0.6307 40 1 4.3777 0.1486 1.5206 41 1 4.3773 -1.3932 2.4105 42 1 2.3942 -2.5684 3.4754 43 1 0.4020 -4.6222 2.2597 44 1 0.4830 -4.0363 3.9762 45 1 3.9849 -8.2584 2.4533 46 1 -0.9419 -10.6442 3.6240 47 1 -1.3887 -9.2674 1.1073 48 1 0.0325 -8.0339 4.0548 49 1 3.9799 -4.2069 2.5693 50 1 2.8026 -4.7393 1.2939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18362374_15065232.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:46:59 Heat of formation + Delta-G solvation = -123.995347 kcal Electronic energy + Delta-G solvation = -30965.440727 eV Core-core repulsion = 26757.529603 eV Total energy + Delta-G solvation = -4207.911124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 393.110 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.72102 -39.50752 -38.45725 -37.54691 -37.10459 -36.77747 -36.48123 -31.85726 -29.39451 -29.00047 -28.71324 -27.78694 -27.34625 -27.23781 -26.94084 -24.92600 -22.37316 -21.35373 -20.33508 -19.70816 -19.16792 -18.75105 -18.28188 -17.99458 -17.67866 -16.91600 -16.37042 -16.03994 -15.90681 -15.68260 -15.55820 -15.12250 -14.98640 -14.79694 -14.64805 -14.51055 -14.18948 -14.15134 -14.02612 -13.92521 -13.48790 -13.41161 -13.33471 -13.31228 -13.22353 -13.11994 -13.04878 -12.98485 -12.88364 -12.87014 -12.69662 -12.51364 -12.42914 -12.32455 -12.16113 -11.68820 -11.63559 -11.60132 -11.40677 -11.20626 -10.64390 -10.34094 -10.24530 -10.11536 -10.00067 -9.88542 -0.95470 -0.52665 0.25682 0.51106 0.93480 1.03562 1.33723 1.42407 1.49140 1.82616 1.83429 1.92372 2.15458 2.51417 2.64614 2.94113 3.36164 3.46843 3.61927 3.67514 3.85602 3.99600 4.11798 4.18329 4.18859 4.44892 4.47818 4.50259 4.54096 4.66688 4.69330 4.73572 4.80492 4.84898 4.85206 4.86647 4.87613 4.88421 4.89235 4.90311 5.01477 5.06968 5.15690 5.16354 5.27777 5.32878 5.41189 5.48382 5.51060 5.60730 5.66566 5.72182 6.58669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.383 4.383 3 C -0.142 4.142 4 C -0.137 4.137 5 Si 1.320 2.680 6 C -0.523 4.523 7 C -0.520 4.520 8 O -0.610 6.610 9 C 0.075 3.925 10 C 0.116 3.884 11 N -1.039 6.039 12 S 2.750 3.250 13 O -0.974 6.974 14 O -0.972 6.972 15 C -0.697 4.697 16 C -0.081 4.081 17 S 0.156 5.844 18 C -0.230 4.230 19 C -0.040 4.040 20 O -0.543 6.543 21 Si 0.919 3.081 22 H -0.244 1.244 23 H -0.230 1.230 24 H -0.238 1.238 25 C -0.053 4.053 26 C 0.100 3.900 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.203 0.797 46 H 0.135 0.865 47 H 0.391 0.609 48 H 0.157 0.843 49 H 0.098 0.902 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 0.970 -4.883 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.425 4.425 3 C -0.199 4.199 4 C -0.194 4.194 5 Si 1.449 2.551 6 C -0.624 4.624 7 C -0.622 4.622 8 O -0.567 6.567 9 C 0.015 3.985 10 C -0.008 4.008 11 N -0.881 5.881 12 S 2.841 3.159 13 O -0.965 6.965 14 O -0.963 6.963 15 C -0.798 4.798 16 C -0.220 4.220 17 S 0.420 5.580 18 C -0.348 4.348 19 C -0.153 4.153 20 O -0.350 6.350 21 Si 0.740 3.260 22 H -0.167 1.167 23 H -0.153 1.153 24 H -0.161 1.161 25 C -0.082 4.082 26 C -0.025 4.025 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.113 0.887 45 H 0.220 0.780 46 H 0.153 0.847 47 H 0.241 0.759 48 H 0.174 0.826 49 H 0.116 0.884 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.677 -1.394 -5.016 5.250 hybrid contribution -0.210 1.556 0.309 1.600 sum 0.467 0.162 -4.707 4.733 Atomic orbital electron populations 1.21555 0.94230 1.02029 1.01690 1.25940 1.00414 1.02842 1.13308 1.21610 1.01288 0.94962 1.02069 1.21549 1.01060 1.00212 0.96607 0.76177 0.62548 0.52571 0.63761 1.27183 1.07123 1.09857 1.18262 1.27155 1.25080 1.05006 1.04920 1.85421 1.78275 1.46564 1.46464 1.23423 0.95819 0.91252 0.88024 1.23118 0.89255 0.85761 1.02692 1.59731 1.26956 1.44707 1.56681 1.00113 0.72272 0.71274 0.72238 1.93558 1.66805 1.86480 1.49622 1.93561 1.30602 1.86886 1.85269 1.30050 1.02830 1.25876 1.21044 1.26120 1.03817 0.96603 0.95436 1.84440 1.03149 1.25925 1.44531 1.25225 1.00423 1.03091 1.06079 1.24470 0.84672 1.00553 1.05573 1.86529 1.41437 1.72006 1.35051 0.85939 0.82509 0.77220 0.80370 1.16706 1.15281 1.16121 1.19687 0.95126 0.94990 0.98416 1.23362 0.98034 0.87880 0.93193 0.92235 0.93610 0.92020 0.91823 0.93315 0.91980 0.92000 0.93657 0.92036 0.91032 0.90583 0.90936 0.90638 0.90638 0.90917 0.86583 0.87128 0.88718 0.77968 0.84733 0.75949 0.82570 0.88415 0.86921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.28 7.85 71.98 0.56 0.85 16 2 C -0.38 1.22 0.53 -10.80 -0.01 1.21 16 3 C -0.14 0.43 7.85 71.98 0.56 0.99 16 4 C -0.14 0.35 7.85 71.98 0.56 0.92 16 5 Si 1.32 -7.50 8.24 68.60 0.57 -6.94 16 6 C -0.52 2.17 8.64 113.37 0.98 3.15 16 7 C -0.52 2.60 8.65 113.37 0.98 3.58 16 8 O -0.61 2.99 8.62 -148.98 -1.28 1.70 16 9 C 0.07 -0.40 3.89 30.84 0.12 -0.28 16 10 C 0.12 -0.50 8.58 83.18 0.71 0.21 16 11 N -1.04 1.53 4.24 -550.99 -2.33 -0.81 16 12 S 2.75 11.56 6.33 -56.49 -0.36 11.21 16 13 O -0.97 -10.02 17.64 -128.00 -2.26 -12.28 16 14 O -0.97 -8.47 17.64 -128.00 -2.26 -10.72 16 15 C -0.70 -1.40 5.89 21.22 0.12 -1.28 16 16 C -0.08 0.06 10.70 66.72 0.71 0.77 16 17 S 0.16 -0.20 20.60 -56.49 -1.16 -1.37 16 18 C -0.23 -0.04 5.70 24.59 0.14 0.10 16 19 C -0.04 0.08 2.96 71.24 0.21 0.29 16 20 O -0.54 0.75 12.88 -148.98 -1.92 -1.17 16 21 Si 0.92 -2.25 26.26 68.60 1.80 -0.45 16 22 H -0.24 0.22 7.11 99.48 0.71 0.93 16 23 H -0.23 0.73 7.11 99.48 0.71 1.43 16 24 H -0.24 0.05 7.11 99.48 0.71 0.76 16 25 C -0.05 -0.12 9.59 21.22 0.20 0.08 16 26 C 0.10 -0.53 8.57 83.09 0.71 0.18 16 27 H 0.06 -0.18 7.79 -2.39 -0.02 -0.20 16 28 H 0.04 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.06 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H 0.06 -0.28 7.79 -2.39 -0.02 -0.30 16 31 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.06 -0.26 7.79 -2.39 -0.02 -0.28 16 33 H 0.06 -0.18 7.97 -2.39 -0.02 -0.20 16 34 H 0.04 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 36 H 0.07 -0.34 7.31 -2.38 -0.02 -0.36 16 37 H 0.08 -0.31 7.79 -2.39 -0.02 -0.33 16 38 H 0.07 -0.25 7.79 -2.39 -0.02 -0.27 16 39 H 0.07 -0.38 7.79 -2.39 -0.02 -0.40 16 40 H 0.07 -0.36 7.79 -2.39 -0.02 -0.38 16 41 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 42 H 0.12 -0.95 6.49 -2.39 -0.02 -0.97 16 43 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H 0.20 -1.03 8.00 -2.91 -0.02 -1.05 16 46 H 0.14 -0.46 7.96 -2.39 -0.02 -0.48 16 47 H 0.39 -3.18 8.70 -74.06 -0.64 -3.83 16 48 H 0.16 0.32 7.97 -2.91 -0.02 0.30 16 49 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 50 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 Total: 0.00 -18.02 430.64 -1.58 -19.61 By element: Atomic # 1 Polarization: -10.61 SS G_CDS: 1.04 Total: -9.57 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 6.59 Total: 10.79 kcal Atomic # 7 Polarization: 1.53 SS G_CDS: -2.33 Total: -0.81 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -7.72 Total: -22.47 kcal Atomic # 14 Polarization: -9.75 SS G_CDS: 2.37 Total: -7.38 kcal Atomic # 16 Polarization: 11.36 SS G_CDS: -1.52 Total: 9.84 kcal Total: -18.02 -1.58 -19.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18362374_15065232.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.389 kcal (2) G-P(sol) polarization free energy of solvation -18.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds