Wall clock time and date at job start Mon Mar 8 2021 10:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46891 * 2 1 4 4 C 1.53004 * 109.47030 * 240.00476 * 2 1 3 5 5 Si 1.86293 * 109.47244 * 120.00085 * 2 1 3 6 6 C 1.86300 * 109.47111 * 299.99961 * 5 2 1 7 7 C 1.86303 * 109.47113 * 180.02562 * 5 2 1 8 8 O 1.63096 * 109.47302 * 60.00219 * 5 2 1 9 9 C 1.42900 * 114.00292 * 180.02562 * 8 5 2 10 10 C 1.53499 * 114.20900 * 210.00243 * 9 8 5 11 11 N 1.47060 * 87.98313 * 220.14548 * 10 9 8 12 12 S 1.65603 * 136.05613 * 207.08053 * 11 10 9 13 13 O 1.42102 * 106.40284 * 341.48325 * 12 11 10 14 14 O 1.42097 * 106.40662 * 208.56097 * 12 11 10 15 15 C 1.76208 * 107.21636 * 95.02164 * 12 11 10 16 16 C 1.38208 * 120.00068 * 345.77194 * 15 12 11 17 17 C 1.38262 * 120.00210 * 180.02562 * 16 15 12 18 18 C 1.38211 * 119.99388 * 359.95670 * 17 16 15 19 19 C 1.38254 * 120.00512 * 359.97438 * 18 17 16 20 20 C 1.38214 * 120.00123 * 0.09923 * 19 18 17 21 21 C 1.50693 * 120.00429 * 179.97438 * 20 19 18 22 22 O 1.42898 * 109.47414 * 254.84603 * 21 20 19 23 23 Si 1.86302 * 109.46998 * 14.84774 * 21 20 19 24 24 H 1.48504 * 109.47246 * 59.99709 * 23 21 20 25 25 H 1.48494 * 109.47320 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47262 * 299.99869 * 23 21 20 27 27 C 1.47065 * 87.88769 * 27.33939 * 11 10 9 28 28 H 1.09003 * 109.47121 * 299.99366 * 1 2 3 29 29 H 1.08994 * 109.47562 * 60.00177 * 1 2 3 30 30 H 1.09000 * 109.46727 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47480 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47244 * 300.00370 * 3 2 1 33 33 H 1.08998 * 109.47117 * 59.99776 * 3 2 1 34 34 H 1.09003 * 109.46589 * 299.99710 * 4 2 1 35 35 H 1.09001 * 109.47194 * 59.99575 * 4 2 1 36 36 H 1.08995 * 109.46839 * 180.02562 * 4 2 1 37 37 H 1.09000 * 109.47211 * 179.97438 * 6 5 2 38 38 H 1.09000 * 109.47280 * 300.00352 * 6 5 2 39 39 H 1.09000 * 109.47324 * 60.00648 * 6 5 2 40 40 H 1.09005 * 109.46858 * 299.99782 * 7 5 2 41 41 H 1.09000 * 109.47108 * 59.99752 * 7 5 2 42 42 H 1.09001 * 109.47348 * 180.02562 * 7 5 2 43 43 H 1.09003 * 113.27720 * 343.06445 * 9 8 5 44 44 H 1.08992 * 113.47050 * 105.36212 * 10 9 8 45 45 H 1.09002 * 113.51784 * 334.93343 * 10 9 8 46 46 H 1.08003 * 120.00086 * 359.97438 * 16 15 12 47 47 H 1.07995 * 120.00100 * 179.97438 * 17 16 15 48 48 H 1.08001 * 119.99397 * 179.72428 * 18 17 16 49 49 H 1.08001 * 120.00073 * 180.02562 * 19 18 17 50 50 H 1.08999 * 109.47434 * 134.84530 * 21 20 19 51 51 H 0.96702 * 114.00157 * 175.00219 * 22 21 20 52 52 H 1.09001 * 113.46973 * 87.44098 * 27 11 10 53 53 H 1.09001 * 113.46792 * 217.87678 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 14 2.1511 -0.8782 1.5210 6 6 1.5301 0.0000 3.0422 7 6 4.0141 -0.8775 1.5214 8 8 1.6075 -2.4159 1.5211 9 6 2.0287 -3.1814 2.6519 10 6 2.1845 -4.6827 2.3730 11 7 1.5858 -4.9369 3.6919 12 16 1.6653 -6.1418 4.8253 13 8 2.1740 -7.2882 4.1572 14 8 0.4209 -6.1303 5.5112 15 6 2.8873 -5.6695 6.0037 16 6 3.7639 -4.6405 5.7157 17 6 4.7231 -4.2703 6.6401 18 6 4.8046 -4.9287 7.8525 19 6 3.9268 -5.9570 8.1413 20 6 2.9690 -6.3282 7.2166 21 6 2.0126 -7.4494 7.5310 22 8 2.3891 -8.6165 6.7974 23 14 2.0671 -7.8187 9.3562 24 1 1.6758 -6.6058 10.1186 25 1 1.1242 -8.9232 9.6662 26 1 3.4444 -8.2210 9.7390 27 6 0.8803 -3.6535 3.5586 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4427 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 1.6767 -1.7489 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7215 -1.2491 37 1 1.8931 -0.5141 3.9322 38 1 1.8933 1.0277 3.0422 39 1 0.4401 -0.0001 3.0423 40 1 4.3778 -1.3911 0.6314 41 1 4.3770 0.1503 1.5216 42 1 4.3775 -1.3917 2.4111 43 1 2.8691 -2.7361 3.1845 44 1 3.2231 -5.0049 2.2983 45 1 1.5729 -5.0368 1.5431 46 1 3.7002 -4.1262 4.7681 47 1 5.4083 -3.4665 6.4148 48 1 5.5567 -4.6424 8.5728 49 1 3.9904 -6.4712 9.0889 50 1 1.0016 -7.1543 7.2501 51 1 1.8634 -9.4003 7.0083 52 1 -0.0756 -3.7352 3.0413 53 1 0.8078 -3.0988 4.4941 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18362374_2726874.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:51:53 Heat of formation + Delta-G solvation = -121.851346 kcal Electronic energy + Delta-G solvation = -33479.494151 eV Core-core repulsion = 29182.523752 eV Total energy + Delta-G solvation = -4296.970399 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 387.154 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.79079 -40.65061 -38.39290 -37.86757 -37.02143 -36.77669 -36.50961 -33.04615 -32.48144 -29.38250 -28.98629 -28.74449 -27.78414 -27.34334 -27.00238 -26.97555 -24.46635 -23.00364 -22.14591 -20.34404 -20.04906 -19.24590 -18.74260 -18.47131 -18.19662 -17.22885 -17.11002 -16.93035 -16.16740 -15.95591 -15.69265 -15.58718 -15.35954 -15.23795 -15.00733 -14.79870 -14.66704 -14.55380 -14.21023 -14.03490 -13.90749 -13.59912 -13.48039 -13.39369 -13.28797 -13.27607 -13.23403 -13.18633 -13.08889 -13.04572 -12.88627 -12.87145 -12.74704 -12.32834 -12.27325 -12.16147 -11.97079 -11.71783 -11.64390 -11.61503 -11.39449 -11.20960 -10.54776 -10.47197 -10.29120 -10.20743 -10.09404 -9.99869 -0.90932 -0.32998 0.07748 0.94877 1.36892 1.41289 1.43927 1.75823 1.82786 1.83661 2.18320 2.32119 2.49478 2.54704 3.04988 3.18837 3.45235 3.54514 3.63055 3.69864 3.90959 3.98656 4.09437 4.17831 4.18487 4.19765 4.31980 4.37895 4.52103 4.54028 4.57601 4.70370 4.70729 4.74070 4.78376 4.84568 4.86664 4.87466 4.89819 4.90141 4.90615 4.92551 5.06642 5.12227 5.15191 5.15655 5.23925 5.27824 5.31351 5.41196 5.47771 5.50978 5.59660 5.69273 5.72516 5.74745 6.55755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.387 4.387 3 C -0.141 4.141 4 C -0.138 4.138 5 Si 1.316 2.684 6 C -0.519 4.519 7 C -0.518 4.518 8 O -0.615 6.615 9 C 0.079 3.921 10 C 0.113 3.887 11 N -1.051 6.051 12 S 2.730 3.270 13 O -0.970 6.970 14 O -0.980 6.980 15 C -0.667 4.667 16 C -0.038 4.038 17 C -0.130 4.130 18 C -0.060 4.060 19 C -0.154 4.154 20 C 0.000 4.000 21 C -0.170 4.170 22 O -0.556 6.556 23 Si 0.998 3.002 24 H -0.245 1.245 25 H -0.246 1.246 26 H -0.243 1.243 27 C 0.099 3.901 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.043 0.957 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.132 0.868 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.163 0.837 47 H 0.173 0.827 48 H 0.168 0.832 49 H 0.145 0.855 50 H 0.093 0.907 51 H 0.401 0.599 52 H 0.102 0.898 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 6.218 1.984 7.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.429 4.429 3 C -0.198 4.198 4 C -0.195 4.195 5 Si 1.446 2.554 6 C -0.621 4.621 7 C -0.620 4.620 8 O -0.572 6.572 9 C 0.020 3.980 10 C -0.012 4.012 11 N -0.894 5.894 12 S 2.825 3.175 13 O -0.960 6.960 14 O -0.971 6.971 15 C -0.755 4.755 16 C -0.057 4.057 17 C -0.148 4.148 18 C -0.078 4.078 19 C -0.173 4.173 20 C -0.002 4.002 21 C -0.277 4.277 22 O -0.365 6.365 23 Si 0.817 3.183 24 H -0.169 1.169 25 H -0.169 1.169 26 H -0.166 1.166 27 C -0.026 4.026 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.149 0.851 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.181 0.819 47 H 0.190 0.810 48 H 0.185 0.815 49 H 0.163 0.837 50 H 0.111 0.889 51 H 0.252 0.748 52 H 0.120 0.880 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.573 5.321 2.589 6.912 hybrid contribution -0.135 0.266 -0.192 0.355 sum 3.438 5.587 2.397 6.984 Atomic orbital electron populations 1.21555 0.94414 1.01870 1.01690 1.26021 1.00307 1.03004 1.13557 1.21604 1.01317 0.94853 1.02053 1.21555 1.01093 1.00119 0.96746 0.76242 0.62850 0.52420 0.63879 1.27140 1.07062 1.09863 1.18041 1.27094 1.24583 1.05206 1.05120 1.85436 1.78859 1.46660 1.46248 1.23693 0.97003 0.91257 0.86062 1.23163 1.00761 0.93838 0.83394 1.59572 1.61019 1.37667 1.31102 1.00563 0.73451 0.71285 0.72212 1.93576 1.81526 1.46451 1.74494 1.93508 1.42782 1.86145 1.74641 1.30612 1.20963 1.10458 1.13485 1.21336 0.91687 0.92193 1.00437 1.21825 0.98609 1.01032 0.93370 1.21902 0.96352 0.92059 0.97443 1.21520 0.95816 0.99779 1.00148 1.19012 0.94960 0.93393 0.92818 1.25820 0.99863 0.87726 1.14319 1.86531 1.63182 1.20062 1.66736 0.84995 0.81396 0.81754 0.70188 1.16854 1.16945 1.16646 1.23466 0.97938 0.79934 1.01265 0.92034 0.93800 0.92289 0.91712 0.93551 0.91793 0.92263 0.93808 0.91951 0.90352 0.90519 0.91086 0.90968 0.90439 0.90151 0.85065 0.87932 0.88015 0.81930 0.81000 0.81467 0.83747 0.88893 0.74833 0.87978 0.87969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.24 7.85 71.98 0.56 0.81 16 2 C -0.39 1.27 0.53 -10.79 -0.01 1.27 16 3 C -0.14 0.50 7.85 71.98 0.56 1.06 16 4 C -0.14 0.27 7.85 71.98 0.56 0.83 16 5 Si 1.32 -9.26 8.24 68.60 0.57 -8.70 16 6 C -0.52 3.49 8.65 113.37 0.98 4.48 16 7 C -0.52 3.81 8.64 113.37 0.98 4.79 16 8 O -0.61 3.14 8.61 -148.98 -1.28 1.86 16 9 C 0.08 -0.53 3.79 31.01 0.12 -0.42 16 10 C 0.11 -0.37 8.51 83.18 0.71 0.34 16 11 N -1.05 -1.14 3.23 -550.09 -1.78 -2.91 16 12 S 2.73 25.03 5.31 -56.49 -0.30 24.73 16 13 O -0.97 -15.48 17.64 -127.24 -2.24 -17.72 16 14 O -0.98 -13.24 15.76 -128.00 -2.02 -15.26 16 15 C -0.67 -4.08 5.83 22.27 0.13 -3.95 16 16 C -0.04 0.05 9.56 22.27 0.21 0.26 16 17 C -0.13 0.58 10.05 22.27 0.22 0.80 16 18 C -0.06 0.18 10.05 22.27 0.22 0.40 16 19 C -0.15 -0.34 8.66 22.27 0.19 -0.15 16 20 C 0.00 0.00 5.29 -19.87 -0.11 -0.11 16 21 C -0.17 -1.15 2.04 71.23 0.15 -1.00 16 22 O -0.56 -4.46 12.40 -148.98 -1.85 -6.30 16 23 Si 1.00 0.98 25.41 68.60 1.74 2.73 16 24 H -0.25 -0.22 7.11 99.48 0.71 0.48 16 25 H -0.25 -0.08 7.11 99.48 0.71 0.63 16 26 H -0.24 -0.11 6.74 99.48 0.67 0.56 16 27 C 0.10 -0.36 8.59 83.26 0.72 0.35 16 28 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 29 H 0.04 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 -0.09 7.96 -2.39 -0.02 -0.11 16 31 H 0.06 -0.34 7.79 -2.39 -0.02 -0.36 16 32 H 0.05 -0.07 8.14 -2.39 -0.02 -0.09 16 33 H 0.06 -0.32 7.79 -2.39 -0.02 -0.34 16 34 H 0.06 -0.10 7.97 -2.39 -0.02 -0.12 16 35 H 0.04 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 -0.22 7.79 -2.39 -0.02 -0.24 16 37 H 0.08 -0.69 7.96 -2.39 -0.02 -0.71 16 38 H 0.08 -0.51 7.79 -2.39 -0.02 -0.53 16 39 H 0.07 -0.39 7.79 -2.39 -0.02 -0.41 16 40 H 0.07 -0.45 7.79 -2.38 -0.02 -0.47 16 41 H 0.08 -0.56 7.79 -2.39 -0.02 -0.58 16 42 H 0.08 -0.80 7.31 -2.39 -0.02 -0.82 16 43 H 0.13 -1.74 6.00 -2.39 -0.01 -1.76 16 44 H 0.10 -0.68 8.14 -2.39 -0.02 -0.70 16 45 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 46 H 0.16 -1.35 6.65 -2.91 -0.02 -1.37 16 47 H 0.17 -2.03 8.06 -2.91 -0.02 -2.06 16 48 H 0.17 -1.61 8.06 -2.91 -0.02 -1.63 16 49 H 0.15 -0.16 4.89 -2.91 -0.01 -0.18 16 50 H 0.09 0.75 5.57 -2.39 -0.01 0.73 16 51 H 0.40 -0.56 8.62 -74.06 -0.64 -1.19 16 52 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 53 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 Total: 0.00 -24.86 429.64 0.03 -24.83 By element: Atomic # 1 Polarization: -13.98 SS G_CDS: 0.98 Total: -13.00 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.21 Total: 9.76 kcal Atomic # 7 Polarization: -1.14 SS G_CDS: -1.78 Total: -2.91 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -7.39 Total: -37.43 kcal Atomic # 14 Polarization: -8.28 SS G_CDS: 2.31 Total: -5.97 kcal Atomic # 16 Polarization: 25.03 SS G_CDS: -0.30 Total: 24.73 kcal Total: -24.86 0.03 -24.83 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18362374_2726874.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.023 kcal (2) G-P(sol) polarization free energy of solvation -24.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds