Wall clock time and date at job start Mon Mar 8 2021 11:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99748 * 2 1 4 4 O 1.20819 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99426 * 179.97438 * 3 2 1 6 6 N 1.46496 * 112.85600 * 321.68515 * 5 3 2 7 7 S 1.65596 * 120.00230 * 292.28327 * 6 5 3 8 8 O 1.42097 * 106.39970 * 308.84733 * 7 6 5 9 9 O 1.42098 * 106.40206 * 175.92132 * 7 6 5 10 10 C 1.76207 * 107.21594 * 62.38617 * 7 6 5 11 11 C 1.38237 * 119.99662 * 270.27641 * 10 7 6 12 12 C 1.38246 * 119.99566 * 180.27696 * 11 10 7 13 13 C 1.38226 * 119.99791 * 359.46947 * 12 11 10 14 14 C 1.50703 * 120.00276 * 180.27466 * 13 12 11 15 15 O 1.42905 * 109.46803 * 300.00513 * 14 13 12 16 16 Si 1.86296 * 109.47650 * 179.97438 * 14 13 12 17 17 C 1.38234 * 120.00435 * 0.25609 * 13 12 11 18 18 C 1.38228 * 120.00092 * 90.00330 * 10 7 6 19 19 C 1.53785 * 113.61266 * 190.48932 * 5 3 2 20 20 C 1.53784 * 87.08304 * 219.94121 * 19 5 3 21 21 O 1.42903 * 113.60801 * 270.88402 * 20 19 5 22 22 C 1.52995 * 113.61444 * 140.06634 * 20 19 5 23 23 F 1.39899 * 109.47371 * 59.99521 * 22 20 19 24 24 F 1.39902 * 109.47100 * 179.97438 * 22 20 19 25 25 F 1.39898 * 109.47345 * 299.99628 * 22 20 19 26 26 C 1.53788 * 113.61059 * 92.88927 * 5 3 2 27 27 H 1.09004 * 109.46955 * 59.99776 * 1 2 3 28 28 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47452 * 300.00144 * 1 2 3 30 30 H 0.97000 * 119.99890 * 112.27757 * 6 5 3 31 31 H 1.07994 * 120.00673 * 0.02562 * 11 10 7 32 32 H 1.07993 * 119.99706 * 179.74327 * 12 11 10 33 33 H 1.09007 * 109.46624 * 59.99791 * 14 13 12 34 34 H 0.96693 * 113.99786 * 299.99333 * 15 14 13 35 35 H 1.48495 * 109.99969 * 179.97438 * 16 14 13 36 36 H 1.48494 * 110.00192 * 301.32191 * 16 14 13 37 37 H 1.08004 * 120.00517 * 180.02562 * 17 13 12 38 38 H 1.08003 * 119.99973 * 359.97438 * 18 10 7 39 39 H 1.09001 * 113.61208 * 334.48845 * 19 5 3 40 40 H 1.08994 * 113.61750 * 105.30149 * 19 5 3 41 41 H 0.96703 * 113.99600 * 180.02562 * 21 20 19 42 42 H 1.08997 * 113.60724 * 254.60478 * 26 5 3 43 43 H 1.08990 * 113.61715 * 25.50851 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1895 0.2470 0.8380 7 16 4.0066 0.2962 2.4831 8 8 4.3630 1.6110 2.8872 9 8 4.6371 -0.8712 2.9920 10 6 2.2864 0.1205 2.8220 11 6 1.4793 1.2401 2.8992 12 6 0.1308 1.1026 3.1708 13 6 -0.4125 -0.1551 3.3543 14 6 -1.8837 -0.3055 3.6443 15 8 -2.2047 0.3888 4.8514 16 14 -2.2973 -2.1117 3.8372 17 6 0.3936 -1.2751 3.2716 18 6 1.7430 -1.1373 3.0052 19 6 4.1089 2.6907 0.2570 20 6 5.1740 2.3910 -0.8109 21 8 6.3582 1.7884 -0.2849 22 6 5.4694 3.5767 -1.7316 23 9 5.9336 4.6543 -0.9699 24 9 6.4456 3.2108 -2.6646 25 9 4.2994 3.9493 -2.4021 26 6 4.1782 1.3777 -1.4065 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.7093 -0.4624 0.4288 31 1 1.9029 2.2224 2.7513 32 1 -0.4990 1.9775 3.2351 33 1 -2.4611 0.1130 2.8198 34 1 -1.7265 0.0684 5.6283 35 1 -3.7453 -2.2733 4.1241 36 1 -1.9387 -2.8499 2.5996 37 1 -0.0310 -2.2578 3.4146 38 1 2.3727 -2.0123 2.9401 39 1 3.4156 3.4822 -0.0278 40 1 4.5183 2.8268 1.2579 41 1 7.0320 1.5978 -0.9517 42 1 4.6451 0.4539 -1.7481 43 1 3.5040 1.8107 -2.1453 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18364790_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:12 Heat of formation + Delta-G solvation = -297.576410 kcal Electronic energy + Delta-G solvation = -41341.301818 eV Core-core repulsion = 35454.040917 eV Total energy + Delta-G solvation = -5887.260901 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.077 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -51.30183 -48.85644 -48.73401 -42.61194 -40.99852 -40.51205 -38.37842 -37.85124 -37.74193 -37.00068 -36.92377 -33.99224 -33.16979 -32.33437 -29.70203 -28.60605 -27.73434 -27.36381 -25.69279 -24.22602 -23.13325 -22.63930 -21.61609 -20.71112 -20.26882 -19.67746 -19.59524 -19.34543 -19.02007 -18.78521 -18.28872 -18.21124 -17.55821 -17.39521 -17.12615 -16.63178 -16.50015 -16.21899 -15.96345 -15.79780 -15.69869 -15.61006 -15.28656 -15.20312 -15.17277 -14.94645 -14.94332 -14.89745 -14.73963 -14.57307 -14.32040 -14.25222 -14.05707 -13.86378 -13.78929 -13.46326 -13.20868 -13.12234 -13.06032 -12.96169 -12.76173 -12.53879 -12.33326 -12.05324 -12.02868 -11.95506 -11.88683 -11.72353 -10.94238 -10.78415 -10.42896 -10.22767 -5.22005 -0.90855 -0.48614 0.06429 0.66545 1.04722 1.12632 1.41820 1.48590 1.57277 1.77830 2.11017 2.17602 2.29485 2.40247 2.51568 2.55906 2.76734 3.04032 3.18213 3.18333 3.27979 3.32289 3.35179 3.59279 3.66023 3.79485 3.94587 3.97129 4.02422 4.04439 4.05451 4.16307 4.19222 4.23830 4.39832 4.45048 4.53724 4.68928 4.72103 4.82561 4.86086 5.06578 5.10895 5.54569 5.56486 5.93953 6.33924 6.36316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.339 6.339 3 C 0.454 3.546 4 O -0.479 6.479 5 C 0.168 3.832 6 N -1.077 6.077 7 S 2.693 3.307 8 O -0.942 6.942 9 O -0.943 6.943 10 C -0.677 4.677 11 C -0.022 4.022 12 C -0.110 4.110 13 C -0.064 4.064 14 C -0.077 4.077 15 O -0.534 6.534 16 Si 0.689 3.311 17 C -0.139 4.139 18 C 0.002 3.998 19 C -0.130 4.130 20 C 0.071 3.929 21 O -0.499 6.499 22 C 0.438 3.562 23 F -0.168 7.168 24 F -0.179 7.179 25 F -0.171 7.171 26 C -0.136 4.136 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.069 0.931 30 H 0.431 0.569 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.382 0.618 35 H -0.251 1.251 36 H -0.254 1.254 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.394 0.606 42 H 0.117 0.883 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 -4.816 -1.900 5.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C 0.293 3.707 4 O -0.364 6.364 5 C 0.076 3.924 6 N -0.837 5.837 7 S 2.783 3.217 8 O -0.932 6.932 9 O -0.933 6.933 10 C -0.764 4.764 11 C -0.041 4.041 12 C -0.129 4.129 13 C -0.065 4.065 14 C -0.188 4.188 15 O -0.340 6.340 16 Si 0.591 3.409 17 C -0.157 4.157 18 C -0.017 4.017 19 C -0.168 4.168 20 C 0.027 3.973 21 O -0.306 6.306 22 C 0.383 3.617 23 F -0.149 7.149 24 F -0.161 7.161 25 F -0.153 7.153 26 C -0.175 4.175 27 H 0.086 0.914 28 H 0.121 0.879 29 H 0.087 0.913 30 H 0.268 0.732 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.230 0.770 35 H -0.175 1.175 36 H -0.179 1.179 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.245 0.755 42 H 0.135 0.865 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.192 -4.569 -1.373 5.250 hybrid contribution -0.304 0.299 -1.530 1.588 sum -2.496 -4.270 -2.903 5.735 Atomic orbital electron populations 1.23529 0.75891 1.04182 1.03186 1.86533 1.23606 1.32154 1.83113 1.23583 0.90968 0.82477 0.73664 1.90740 1.65808 1.36105 1.43708 1.20568 0.85113 0.90844 0.95900 1.55185 1.65588 1.37430 1.25524 1.02105 0.73717 0.74190 0.71702 1.93572 1.81241 1.38443 1.79904 1.93638 1.73686 1.49545 1.76428 1.30908 1.26375 1.00240 1.18917 1.21070 0.93772 0.97486 0.91799 1.21130 0.94977 0.97478 0.99289 1.20768 0.96445 0.93928 0.95316 1.25229 0.92731 1.10382 0.90453 1.86539 1.68313 1.62206 1.16927 0.94506 0.83160 0.75205 0.88065 1.21153 0.94025 0.98107 1.02432 1.20827 0.95124 0.95499 0.90296 1.24024 0.94609 0.94548 1.03600 1.23239 0.88583 0.90323 0.95205 1.86712 1.26066 1.80533 1.37325 1.20966 0.74737 0.85565 0.80389 1.93259 1.88735 1.57785 1.75154 1.93205 1.63711 1.91415 1.67721 1.93215 1.48108 1.92387 1.81579 1.24046 0.97676 1.01572 0.94234 0.91428 0.87937 0.91271 0.73150 0.84064 0.84459 0.86407 0.77045 1.17534 1.17863 0.84496 0.83608 0.84499 0.83789 0.75546 0.86472 0.85559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.02 16 2 O -0.34 0.32 9.42 -39.26 -0.37 -0.05 16 3 C 0.45 -0.11 4.41 36.00 0.16 0.05 16 4 O -0.48 -0.80 15.29 -18.74 -0.29 -1.08 16 5 C 0.17 -0.25 1.26 -132.16 -0.17 -0.42 16 6 N -1.08 2.08 5.01 0.26 0.00 2.09 16 7 S 2.69 2.39 5.72 -107.50 -0.61 1.78 16 8 O -0.94 -3.03 14.45 -57.17 -0.83 -3.86 16 9 O -0.94 -2.98 17.28 -57.17 -0.99 -3.96 16 10 C -0.68 -0.07 4.03 -39.59 -0.16 -0.23 16 11 C -0.02 -0.01 7.30 -39.58 -0.29 -0.30 16 12 C -0.11 0.05 7.93 -39.58 -0.31 -0.26 16 13 C -0.06 0.10 4.54 -104.63 -0.47 -0.37 16 14 C -0.08 0.16 2.82 36.01 0.10 0.26 16 15 O -0.53 0.63 12.77 -35.23 -0.45 0.18 16 16 Si 0.69 -1.90 29.79 -169.99 -5.06 -6.97 16 17 C -0.14 0.29 8.67 -39.58 -0.34 -0.05 16 18 C 0.00 0.00 9.52 -39.58 -0.38 -0.38 16 19 C -0.13 0.06 6.16 -25.91 -0.16 -0.10 16 20 C 0.07 -0.13 1.36 -89.67 -0.12 -0.25 16 21 O -0.50 1.16 12.91 -35.23 -0.45 0.71 16 22 C 0.44 -0.20 2.85 37.15 0.11 -0.10 16 23 F -0.17 -0.25 17.18 2.25 0.04 -0.21 16 24 F -0.18 0.12 16.65 2.25 0.04 0.16 16 25 F -0.17 -0.01 15.77 2.25 0.04 0.02 16 26 C -0.14 0.48 6.65 -25.77 -0.17 0.31 16 27 H 0.07 -0.13 8.13 -51.93 -0.42 -0.55 16 28 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 29 H 0.07 -0.09 5.21 -51.93 -0.27 -0.36 16 30 H 0.43 -1.88 8.81 -34.47 -0.30 -2.19 16 31 H 0.14 0.03 7.62 -52.49 -0.40 -0.37 16 32 H 0.14 -0.09 8.06 -52.49 -0.42 -0.52 16 33 H 0.12 -0.24 7.96 -51.92 -0.41 -0.65 16 34 H 0.38 -1.84 8.70 45.56 0.40 -1.44 16 35 H -0.25 -0.19 7.11 56.52 0.40 0.21 16 36 H -0.25 0.29 7.11 56.52 0.40 0.69 16 37 H 0.14 -0.57 4.88 -52.48 -0.26 -0.83 16 38 H 0.15 -0.36 7.62 -52.48 -0.40 -0.76 16 39 H 0.14 -0.12 7.09 -51.93 -0.37 -0.49 16 40 H 0.14 0.14 5.50 -51.93 -0.29 -0.15 16 41 H 0.39 -2.32 8.42 45.56 0.38 -1.93 16 42 H 0.12 -0.70 8.10 -51.93 -0.42 -1.12 16 43 H 0.13 -0.49 7.10 -51.93 -0.37 -0.86 16 LS Contribution 375.85 15.07 5.66 5.66 Total: 0.00 -10.83 375.85 -7.59 -18.42 By element: Atomic # 1 Polarization: -8.90 SS G_CDS: -3.17 Total: -12.07 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -1.14 Total: -0.81 kcal Atomic # 7 Polarization: 2.08 SS G_CDS: 0.00 Total: 2.09 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -3.38 Total: -8.07 kcal Atomic # 9 Polarization: -0.14 SS G_CDS: 0.11 Total: -0.03 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.06 Total: -6.97 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -0.61 Total: 1.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -10.83 -7.59 -18.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -279.157 kcal (2) G-P(sol) polarization free energy of solvation -10.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -289.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds