Wall clock time and date at job start Mon Mar 8 2021 11:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 116.99748 * 2 1 4 4 O 1.20819 * 120.00225 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99426 * 179.97438 * 3 2 1 6 6 N 1.46496 * 112.85600 * 321.68515 * 5 3 2 7 7 S 1.65596 * 120.00230 * 292.28327 * 6 5 3 8 8 O 1.42097 * 106.39970 * 308.84733 * 7 6 5 9 9 O 1.42098 * 106.40206 * 175.92132 * 7 6 5 10 10 C 1.76207 * 107.21594 * 62.38617 * 7 6 5 11 11 C 1.38237 * 119.99662 * 270.27641 * 10 7 6 12 12 C 1.38246 * 119.99566 * 180.27696 * 11 10 7 13 13 C 1.38226 * 119.99791 * 359.46947 * 12 11 10 14 14 C 1.50703 * 120.00276 * 180.27466 * 13 12 11 15 15 O 1.42905 * 109.46803 * 300.00513 * 14 13 12 16 16 Si 1.86296 * 109.47650 * 179.97438 * 14 13 12 17 17 C 1.38234 * 120.00435 * 0.25609 * 13 12 11 18 18 C 1.38228 * 120.00092 * 90.00330 * 10 7 6 19 19 C 1.53785 * 113.61266 * 190.48932 * 5 3 2 20 20 C 1.53784 * 87.08304 * 219.94121 * 19 5 3 21 21 O 1.42903 * 113.60801 * 270.88402 * 20 19 5 22 22 C 1.52995 * 113.61444 * 140.06634 * 20 19 5 23 23 F 1.39899 * 109.47371 * 59.99521 * 22 20 19 24 24 F 1.39902 * 109.47100 * 179.97438 * 22 20 19 25 25 F 1.39898 * 109.47345 * 299.99628 * 22 20 19 26 26 C 1.53788 * 113.61059 * 92.88927 * 5 3 2 27 27 H 1.09004 * 109.46955 * 59.99776 * 1 2 3 28 28 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47452 * 300.00144 * 1 2 3 30 30 H 0.97000 * 119.99890 * 112.27757 * 6 5 3 31 31 H 1.07994 * 120.00673 * 0.02562 * 11 10 7 32 32 H 1.07993 * 119.99706 * 179.74327 * 12 11 10 33 33 H 1.09007 * 109.46624 * 59.99791 * 14 13 12 34 34 H 0.96693 * 113.99786 * 299.99333 * 15 14 13 35 35 H 1.48495 * 109.99969 * 179.97438 * 16 14 13 36 36 H 1.48494 * 110.00192 * 301.32191 * 16 14 13 37 37 H 1.08004 * 120.00517 * 180.02562 * 17 13 12 38 38 H 1.08003 * 119.99973 * 359.97438 * 18 10 7 39 39 H 1.09001 * 113.61208 * 334.48845 * 19 5 3 40 40 H 1.08994 * 113.61750 * 105.30149 * 19 5 3 41 41 H 0.96703 * 113.99600 * 180.02562 * 21 20 19 42 42 H 1.08997 * 113.60724 * 254.60478 * 26 5 3 43 43 H 1.08990 * 113.61715 * 25.50851 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1895 0.2470 0.8380 7 16 4.0066 0.2962 2.4831 8 8 4.3630 1.6110 2.8872 9 8 4.6371 -0.8712 2.9920 10 6 2.2864 0.1205 2.8220 11 6 1.4793 1.2401 2.8992 12 6 0.1308 1.1026 3.1708 13 6 -0.4125 -0.1551 3.3543 14 6 -1.8837 -0.3055 3.6443 15 8 -2.2047 0.3888 4.8514 16 14 -2.2973 -2.1117 3.8372 17 6 0.3936 -1.2751 3.2716 18 6 1.7430 -1.1373 3.0052 19 6 4.1089 2.6907 0.2570 20 6 5.1740 2.3910 -0.8109 21 8 6.3582 1.7884 -0.2849 22 6 5.4694 3.5767 -1.7316 23 9 5.9336 4.6543 -0.9699 24 9 6.4456 3.2108 -2.6646 25 9 4.2994 3.9493 -2.4021 26 6 4.1782 1.3777 -1.4065 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.7093 -0.4624 0.4288 31 1 1.9029 2.2224 2.7513 32 1 -0.4990 1.9775 3.2351 33 1 -2.4611 0.1130 2.8198 34 1 -1.7265 0.0684 5.6283 35 1 -3.7453 -2.2733 4.1241 36 1 -1.9387 -2.8499 2.5996 37 1 -0.0310 -2.2578 3.4146 38 1 2.3727 -2.0123 2.9401 39 1 3.4156 3.4822 -0.0278 40 1 4.5183 2.8268 1.2579 41 1 7.0320 1.5978 -0.9517 42 1 4.6451 0.4539 -1.7481 43 1 3.5040 1.8107 -2.1453 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18364790_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:11 Heat of formation + Delta-G solvation = -303.905766 kcal Electronic energy + Delta-G solvation = -41341.576280 eV Core-core repulsion = 35454.040917 eV Total energy + Delta-G solvation = -5887.535363 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.077 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -51.28854 -48.82362 -48.76257 -42.52680 -40.89724 -40.41998 -38.51304 -37.74473 -37.67826 -37.14235 -36.79526 -33.88219 -33.08894 -32.24844 -29.60285 -28.50314 -27.56708 -27.25995 -25.61637 -24.13946 -23.05497 -22.56351 -21.52905 -20.67718 -20.19883 -19.65458 -19.57504 -19.29338 -18.96298 -18.76772 -18.20769 -18.14826 -17.49952 -17.29118 -17.04714 -16.56101 -16.37374 -16.14235 -15.87950 -15.73706 -15.68530 -15.60418 -15.19659 -15.18386 -15.11230 -14.93433 -14.89729 -14.82914 -14.66872 -14.53321 -14.22104 -14.17936 -13.97556 -13.80933 -13.74874 -13.36996 -13.31861 -13.14066 -13.03967 -12.83162 -12.68906 -12.49209 -12.28470 -11.99787 -11.95090 -11.86394 -11.81569 -11.56709 -10.86374 -10.66732 -10.32109 -10.15147 -5.01328 -0.92421 -0.44561 0.14708 0.71914 1.21355 1.22814 1.56673 1.58494 1.61938 1.93933 2.22385 2.27066 2.44893 2.49706 2.54841 2.66139 2.85270 3.05238 3.24871 3.36201 3.36692 3.42325 3.49874 3.70360 3.76734 3.93315 4.11366 4.13564 4.14584 4.20218 4.24855 4.31032 4.34314 4.48475 4.54897 4.58111 4.66009 4.75327 4.79797 4.90862 4.94823 5.14047 5.20026 5.65207 5.81739 6.32978 6.42094 6.66546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.456 3.544 4 O -0.502 6.502 5 C 0.168 3.832 6 N -1.064 6.064 7 S 2.702 3.298 8 O -0.972 6.972 9 O -0.967 6.967 10 C -0.682 4.682 11 C -0.033 4.033 12 C -0.117 4.117 13 C -0.058 4.058 14 C -0.084 4.084 15 O -0.553 6.553 16 Si 0.771 3.229 17 C -0.134 4.134 18 C -0.002 4.002 19 C -0.143 4.143 20 C 0.078 3.922 21 O -0.508 6.508 22 C 0.436 3.564 23 F -0.183 7.183 24 F -0.177 7.177 25 F -0.176 7.176 26 C -0.124 4.124 27 H 0.067 0.933 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.443 0.557 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.116 0.884 34 H 0.397 0.603 35 H -0.301 1.301 36 H -0.266 1.266 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.409 0.591 42 H 0.149 0.851 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 -6.642 -2.622 7.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.296 3.704 4 O -0.389 6.389 5 C 0.076 3.924 6 N -0.827 5.827 7 S 2.794 3.206 8 O -0.962 6.962 9 O -0.958 6.958 10 C -0.771 4.771 11 C -0.053 4.053 12 C -0.136 4.136 13 C -0.058 4.058 14 C -0.193 4.193 15 O -0.361 6.361 16 Si 0.675 3.325 17 C -0.152 4.152 18 C -0.021 4.021 19 C -0.181 4.181 20 C 0.034 3.966 21 O -0.317 6.317 22 C 0.382 3.618 23 F -0.165 7.165 24 F -0.158 7.158 25 F -0.157 7.157 26 C -0.162 4.162 27 H 0.086 0.914 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.284 0.716 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.247 0.753 35 H -0.229 1.229 36 H -0.192 1.192 37 H 0.180 0.820 38 H 0.180 0.820 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.263 0.737 42 H 0.167 0.833 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.160 -6.403 -2.100 7.077 hybrid contribution -0.379 0.904 -1.294 1.623 sum -2.539 -5.500 -3.394 6.943 Atomic orbital electron populations 1.23701 0.75452 1.05441 1.02960 1.86530 1.24077 1.31619 1.82804 1.23769 0.91332 0.82340 0.72924 1.90731 1.66384 1.36889 1.44896 1.20546 0.84542 0.90163 0.97196 1.54858 1.65631 1.37775 1.24473 1.01519 0.73837 0.73064 0.72143 1.93542 1.82069 1.39724 1.80856 1.93599 1.74620 1.50133 1.77400 1.30735 1.25535 1.00842 1.19946 1.21033 0.94229 0.97310 0.92717 1.21147 0.94644 0.98076 0.99685 1.20826 0.96717 0.93627 0.94659 1.25412 0.92298 1.11287 0.90309 1.86506 1.68877 1.62887 1.17805 0.93567 0.79701 0.73078 0.86129 1.21401 0.93541 0.98966 1.01294 1.21100 0.95817 0.95411 0.89784 1.24046 0.95466 0.95414 1.03214 1.23127 0.88825 0.90234 0.94426 1.86692 1.26418 1.80266 1.38368 1.21205 0.74548 0.85567 0.80499 1.93226 1.88937 1.58734 1.75585 1.93205 1.63617 1.91311 1.67659 1.93204 1.48319 1.92488 1.81683 1.24116 0.96808 1.02370 0.92926 0.91406 0.85902 0.91883 0.71604 0.85021 0.84853 0.86672 0.75310 1.22918 1.19186 0.82020 0.82046 0.84773 0.85524 0.73718 0.83283 0.84940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.56 113.37 1.20 1.13 16 2 O -0.34 0.79 9.42 -51.44 -0.48 0.31 16 3 C 0.46 -0.06 4.41 71.24 0.31 0.25 16 4 O -0.50 -2.25 15.29 21.99 0.34 -1.91 16 5 C 0.17 -0.49 1.26 3.39 0.00 -0.48 16 6 N -1.06 4.17 5.01 -153.08 -0.77 3.40 16 7 S 2.70 7.03 5.72 -56.49 -0.32 6.71 16 8 O -0.97 -8.14 14.45 -128.00 -1.85 -9.99 16 9 O -0.97 -6.49 17.28 -128.00 -2.21 -8.70 16 10 C -0.68 -0.45 4.03 22.27 0.09 -0.36 16 11 C -0.03 -0.06 7.30 22.27 0.16 0.10 16 12 C -0.12 0.02 7.93 22.27 0.18 0.20 16 13 C -0.06 0.21 4.54 -19.87 -0.09 0.12 16 14 C -0.08 0.38 2.82 71.24 0.20 0.58 16 15 O -0.55 1.36 12.77 -148.98 -1.90 -0.54 16 16 Si 0.77 -4.97 29.79 68.60 2.04 -2.92 16 17 C -0.13 0.74 8.67 22.27 0.19 0.93 16 18 C 0.00 0.01 9.52 22.27 0.21 0.22 16 19 C -0.14 -0.05 6.16 31.12 0.19 0.14 16 20 C 0.08 -0.28 1.36 -10.18 -0.01 -0.29 16 21 O -0.51 2.49 12.91 -148.98 -1.92 0.56 16 22 C 0.44 -0.25 2.85 71.98 0.21 -0.04 16 23 F -0.18 -0.76 17.18 44.97 0.77 0.01 16 24 F -0.18 0.29 16.65 44.97 0.75 1.04 16 25 F -0.18 -0.10 15.77 44.97 0.71 0.61 16 26 C -0.12 0.99 6.65 31.21 0.21 1.20 16 27 H 0.07 -0.26 8.13 -2.38 -0.02 -0.28 16 28 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H 0.06 -0.15 5.21 -2.39 -0.01 -0.16 16 30 H 0.44 -4.26 8.81 -96.75 -0.85 -5.11 16 31 H 0.13 0.41 7.62 -2.91 -0.02 0.38 16 32 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 33 H 0.12 -0.47 7.96 -2.38 -0.02 -0.49 16 34 H 0.40 -3.99 8.70 -74.06 -0.64 -4.64 16 35 H -0.30 -0.66 7.11 99.48 0.71 0.05 16 36 H -0.27 1.12 7.11 99.48 0.71 1.83 16 37 H 0.16 -1.76 4.88 -2.91 -0.01 -1.77 16 38 H 0.16 -1.03 7.62 -2.91 -0.02 -1.05 16 39 H 0.13 0.04 7.09 -2.39 -0.02 0.02 16 40 H 0.13 0.53 5.50 -2.39 -0.01 0.52 16 41 H 0.41 -5.15 8.42 -74.05 -0.62 -5.77 16 42 H 0.15 -2.16 8.10 -2.39 -0.02 -2.17 16 43 H 0.13 -1.15 7.10 -2.39 -0.02 -1.17 16 Total: 0.00 -25.85 375.85 -2.73 -28.58 By element: Atomic # 1 Polarization: -19.93 SS G_CDS: -0.92 Total: -20.86 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 3.05 Total: 3.70 kcal Atomic # 7 Polarization: 4.17 SS G_CDS: -0.77 Total: 3.40 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -8.04 Total: -20.27 kcal Atomic # 9 Polarization: -0.57 SS G_CDS: 2.23 Total: 1.66 kcal Atomic # 14 Polarization: -4.97 SS G_CDS: 2.04 Total: -2.92 kcal Atomic # 16 Polarization: 7.03 SS G_CDS: -0.32 Total: 6.71 kcal Total: -25.85 -2.73 -28.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -275.326 kcal (2) G-P(sol) polarization free energy of solvation -25.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -301.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -303.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds