Wall clock time and date at job start Mon Mar 8 2021 11:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99632 * 2 1 4 4 O 1.20822 * 120.00418 * 359.12146 * 3 2 1 5 5 C 1.50702 * 119.99769 * 179.11838 * 3 2 1 6 6 N 1.46500 * 112.85175 * 47.50298 * 5 3 2 7 7 S 1.65602 * 119.99772 * 318.32990 * 6 5 3 8 8 O 1.42096 * 106.40608 * 328.29278 * 7 6 5 9 9 O 1.42101 * 106.40099 * 195.37240 * 7 6 5 10 10 C 1.76208 * 107.21772 * 81.83227 * 7 6 5 11 11 C 1.33386 * 125.20065 * 185.14522 * 10 7 6 12 12 C 1.50701 * 122.54170 * 359.97438 * 11 10 7 13 13 O 1.42898 * 109.46871 * 284.99660 * 12 11 10 14 14 Si 1.86303 * 109.46930 * 164.99667 * 12 11 10 15 15 C 1.38427 * 114.91752 * 179.75308 * 11 10 7 16 16 C 1.33389 * 114.92170 * 0.42910 * 15 11 10 17 17 S 1.75881 * 125.20223 * 5.12677 * 10 7 6 18 18 C 1.53786 * 113.69312 * 276.23636 * 5 3 2 19 19 C 1.53780 * 87.08162 * 220.00729 * 18 5 3 20 20 O 1.42897 * 113.61411 * 270.88263 * 19 18 5 21 21 C 1.52999 * 113.69106 * 139.99175 * 19 18 5 22 22 F 1.39901 * 109.46901 * 322.46252 * 21 19 18 23 23 F 1.39893 * 109.47426 * 82.46120 * 21 19 18 24 24 F 1.39905 * 109.47048 * 202.46622 * 21 19 18 25 25 C 1.53783 * 87.08405 * 25.42936 * 19 18 5 26 26 H 1.08999 * 109.47153 * 184.48689 * 1 2 3 27 27 H 1.09000 * 109.46891 * 304.48244 * 1 2 3 28 28 H 1.08998 * 109.47359 * 64.48229 * 1 2 3 29 29 H 0.96996 * 120.00319 * 138.32471 * 6 5 3 30 30 H 1.08994 * 109.47044 * 44.99810 * 12 11 10 31 31 H 0.96698 * 114.00050 * 299.99556 * 13 12 11 32 32 H 1.48501 * 109.99913 * 58.68079 * 14 12 11 33 33 H 1.48500 * 109.99703 * 179.97438 * 14 12 11 34 34 H 1.07997 * 122.54043 * 180.27983 * 15 11 10 35 35 H 1.08002 * 125.20220 * 179.85834 * 16 15 11 36 36 H 1.09001 * 113.61044 * 334.55826 * 18 5 3 37 37 H 1.08999 * 113.61437 * 105.45633 * 18 5 3 38 38 H 0.96700 * 113.99880 * 277.49769 * 20 19 18 39 39 H 1.08993 * 113.61940 * 220.02066 * 25 19 18 40 40 H 1.08999 * 113.68892 * 89.12165 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0160 5 6 3.5661 1.2750 0.0201 6 7 4.1956 0.3871 -0.9606 7 16 3.6124 -1.1468 -1.1831 8 8 3.1055 -1.5698 0.0752 9 8 4.6151 -1.8578 -1.8959 10 6 2.2253 -1.0259 -2.2630 11 6 1.4256 -2.0376 -2.6037 12 6 1.6264 -3.4390 -2.0872 13 8 2.7354 -4.0398 -2.7588 14 14 0.0899 -4.4438 -2.4041 15 6 0.3943 -1.7017 -3.4638 16 6 0.3619 -0.4191 -3.8287 17 16 1.6833 0.4474 -3.0563 18 6 4.1720 1.1644 1.4292 19 6 5.1677 2.2553 1.0013 20 8 6.3556 1.7407 0.3963 21 6 5.4563 3.2870 2.0937 22 9 4.2821 3.5524 2.8063 23 9 6.4274 2.7836 2.9658 24 9 5.9232 4.4685 1.5076 25 6 4.1081 2.7138 -0.0146 26 1 -0.3633 -1.0245 0.0804 27 1 -0.3633 0.5818 0.8471 28 1 -0.3634 0.4427 -0.9274 29 1 4.9538 0.6977 -1.4796 30 1 1.8246 -3.4064 -1.0159 31 1 2.6278 -4.1018 -3.7178 32 1 -0.2093 -4.4692 -3.8585 33 1 0.2754 -5.8281 -1.8999 34 1 -0.3279 -2.4239 -3.8149 35 1 -0.3669 0.0209 -4.4933 36 1 3.4935 1.4792 2.2221 37 1 4.6397 0.2003 1.6290 38 1 7.0259 1.4507 1.0302 39 1 4.5241 3.0005 -0.9803 40 1 3.4115 3.4522 0.3823 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18364790_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:17 Heat of formation + Delta-G solvation = -280.902887 kcal Electronic energy + Delta-G solvation = -39975.650800 eV Core-core repulsion = 34178.265164 eV Total energy + Delta-G solvation = -5797.385637 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.034 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -51.30685 -48.84900 -48.75567 -42.57739 -40.68391 -40.10959 -38.18692 -37.64348 -37.22151 -36.92394 -36.75416 -34.04740 -31.53021 -29.64312 -28.60981 -28.05506 -27.64182 -25.68229 -24.42655 -22.69038 -21.84468 -21.27532 -20.38352 -20.04125 -19.80956 -19.62775 -19.46873 -19.04373 -18.66682 -18.23198 -17.88205 -17.50450 -17.31728 -16.79461 -16.52613 -16.38031 -16.09796 -15.97582 -15.71057 -15.61542 -15.35936 -15.20602 -15.15629 -15.11087 -14.96211 -14.89976 -14.74369 -14.46072 -14.25029 -14.09926 -13.91295 -13.77010 -13.62880 -13.33437 -13.17095 -13.02719 -12.89625 -12.79285 -12.67478 -12.61772 -12.39298 -12.25792 -12.09932 -11.90314 -11.65999 -11.56569 -10.99870 -10.76676 -10.41933 -9.75846 -5.09880 -0.76736 -0.70183 0.13878 0.45704 0.78970 1.10252 1.10471 1.19563 1.46661 1.49495 1.78335 1.86247 2.08270 2.29538 2.40252 2.52901 2.56085 2.78911 3.11754 3.22010 3.28387 3.38658 3.41733 3.48392 3.87248 3.90578 3.99838 4.05677 4.10361 4.12153 4.20488 4.29152 4.31926 4.43528 4.52040 4.57513 4.60952 4.77020 4.96965 5.12535 5.57237 5.90733 6.29212 6.36608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.333 6.333 3 C 0.451 3.549 4 O -0.472 6.472 5 C 0.176 3.824 6 N -1.089 6.089 7 S 2.715 3.285 8 O -0.915 6.915 9 O -0.928 6.928 10 C -0.745 4.745 11 C 0.004 3.996 12 C -0.104 4.104 13 O -0.512 6.512 14 Si 0.708 3.292 15 C -0.159 4.159 16 C -0.162 4.162 17 S 0.188 5.812 18 C -0.154 4.154 19 C 0.065 3.935 20 O -0.505 6.505 21 C 0.439 3.561 22 F -0.171 7.171 23 F -0.178 7.178 24 F -0.171 7.171 25 C -0.098 4.098 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.434 0.566 30 H 0.133 0.867 31 H 0.379 0.621 32 H -0.254 1.254 33 H -0.249 1.249 34 H 0.156 0.844 35 H 0.178 0.822 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.398 0.602 39 H 0.117 0.883 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 1.386 -1.260 4.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.248 6.248 3 C 0.290 3.710 4 O -0.357 6.357 5 C 0.084 3.916 6 N -0.850 5.850 7 S 2.799 3.201 8 O -0.905 6.905 9 O -0.918 6.918 10 C -0.945 4.945 11 C -0.013 4.013 12 C -0.216 4.216 13 O -0.318 6.318 14 Si 0.607 3.393 15 C -0.190 4.190 16 C -0.299 4.299 17 S 0.454 5.546 18 C -0.193 4.193 19 C 0.021 3.979 20 O -0.313 6.313 21 C 0.384 3.616 22 F -0.152 7.152 23 F -0.159 7.159 24 F -0.152 7.152 25 C -0.137 4.137 26 H 0.128 0.872 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.272 0.728 30 H 0.150 0.850 31 H 0.227 0.773 32 H -0.179 1.179 33 H -0.173 1.173 34 H 0.174 0.826 35 H 0.195 0.805 36 H 0.144 0.856 37 H 0.136 0.864 38 H 0.249 0.751 39 H 0.136 0.864 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.306 1.828 -1.187 4.827 hybrid contribution 0.356 -0.685 -0.948 1.222 sum -3.951 1.143 -2.135 4.634 Atomic orbital electron populations 1.23447 0.75234 1.04761 1.02779 1.86785 1.24462 1.30795 1.82775 1.23268 0.90575 0.83176 0.74000 1.90723 1.65629 1.36061 1.43263 1.20457 0.85497 0.93845 0.91762 1.55589 1.45150 1.33664 1.50623 1.01762 0.72831 0.71463 0.74035 1.93634 1.80351 1.77909 1.38586 1.93687 1.55983 1.67408 1.74725 1.35754 1.27970 1.04134 1.26614 1.18889 0.92434 0.95670 0.94302 1.25360 1.02252 0.92406 1.01558 1.86762 1.39076 1.81297 1.24688 0.94763 0.80654 0.80829 0.83076 1.20325 1.00601 0.96984 1.01055 1.26039 1.02223 0.97638 1.04045 1.84258 1.23277 1.07203 1.39814 1.24280 0.97792 1.01263 0.95966 1.23278 0.88521 0.93119 0.92992 1.86588 1.26219 1.82510 1.35997 1.20950 0.74751 0.82732 0.83146 1.93219 1.47735 1.94406 1.79858 1.93209 1.63981 1.87014 1.71724 1.93249 1.88702 1.49548 1.83679 1.23491 0.94390 0.94253 1.01547 0.87202 0.91082 0.91756 0.72849 0.84956 0.77273 1.17890 1.17286 0.82639 0.80465 0.85617 0.86412 0.75082 0.86429 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.05 10.58 101.05 1.07 1.01 16 2 O -0.33 -0.16 4.30 -47.26 -0.20 -0.36 16 3 C 0.45 0.24 5.41 36.01 0.19 0.43 16 4 O -0.47 -0.82 15.59 -18.75 -0.29 -1.11 16 5 C 0.18 -0.14 1.13 -132.15 -0.15 -0.29 16 6 N -1.09 0.70 5.17 0.27 0.00 0.70 16 7 S 2.72 6.05 4.69 -107.50 -0.50 5.54 16 8 O -0.91 -3.01 14.01 -67.05 -0.94 -3.95 16 9 O -0.93 -5.06 17.86 -57.20 -1.02 -6.08 16 10 C -0.74 -0.65 4.35 29.04 0.13 -0.53 16 11 C 0.00 0.00 5.14 -106.25 -0.55 -0.55 16 12 C -0.10 -0.06 2.33 36.01 0.08 0.03 16 13 O -0.51 -1.17 12.72 -35.23 -0.45 -1.62 16 14 Si 0.71 -1.20 30.45 -169.99 -5.18 -6.37 16 15 C -0.16 0.31 8.74 -41.21 -0.36 -0.05 16 16 C -0.16 0.38 11.23 29.04 0.33 0.71 16 17 S 0.19 -0.17 21.03 -107.50 -2.26 -2.43 16 18 C -0.15 0.25 6.70 -25.92 -0.17 0.07 16 19 C 0.06 -0.13 1.36 -89.81 -0.12 -0.25 16 20 O -0.51 1.38 12.54 -35.23 -0.44 0.94 16 21 C 0.44 -0.31 2.85 37.16 0.11 -0.21 16 22 F -0.17 0.00 15.77 2.25 0.04 0.04 16 23 F -0.18 0.07 16.65 2.25 0.04 0.11 16 24 F -0.17 -0.09 17.18 2.25 0.04 -0.05 16 25 C -0.10 0.21 6.29 -25.92 -0.16 0.04 16 26 H 0.11 -0.43 8.14 -51.93 -0.42 -0.85 16 27 H 0.07 -0.14 8.05 -51.93 -0.42 -0.56 16 28 H 0.06 -0.14 7.93 -51.93 -0.41 -0.56 16 29 H 0.43 -1.01 8.30 -34.47 -0.29 -1.30 16 30 H 0.13 0.11 6.93 -51.93 -0.36 -0.25 16 31 H 0.38 -0.45 8.70 45.56 0.40 -0.05 16 32 H -0.25 0.19 6.81 56.52 0.38 0.58 16 33 H -0.25 -0.38 7.11 56.52 0.40 0.02 16 34 H 0.16 -0.58 5.53 -52.49 -0.29 -0.87 16 35 H 0.18 -0.86 8.06 -52.49 -0.42 -1.28 16 36 H 0.13 -0.29 7.10 -51.93 -0.37 -0.65 16 37 H 0.12 -0.23 8.14 -51.93 -0.42 -0.65 16 38 H 0.40 -2.17 8.42 45.56 0.38 -1.79 16 39 H 0.12 -0.41 8.14 -51.93 -0.42 -0.83 16 40 H 0.14 -0.32 7.17 -51.93 -0.37 -0.69 16 LS Contribution 368.59 15.07 5.55 5.55 Total: 0.00 -10.52 368.59 -7.86 -18.38 By element: Atomic # 1 Polarization: -7.09 SS G_CDS: -2.63 Total: -9.72 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 0.39 Total: 0.43 kcal Atomic # 7 Polarization: 0.70 SS G_CDS: 0.00 Total: 0.70 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -3.35 Total: -12.19 kcal Atomic # 9 Polarization: -0.02 SS G_CDS: 0.11 Total: 0.09 kcal Atomic # 14 Polarization: -1.20 SS G_CDS: -5.18 Total: -6.37 kcal Atomic # 16 Polarization: 5.88 SS G_CDS: -2.77 Total: 3.12 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -10.52 -7.86 -18.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -262.518 kcal (2) G-P(sol) polarization free energy of solvation -10.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -273.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds