Wall clock time and date at job start Mon Mar 8 2021 11:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34226 * 116.99632 * 2 1 4 4 O 1.20822 * 120.00418 * 359.12146 * 3 2 1 5 5 C 1.50702 * 119.99769 * 179.11838 * 3 2 1 6 6 N 1.46500 * 112.85175 * 47.50298 * 5 3 2 7 7 S 1.65602 * 119.99772 * 318.32990 * 6 5 3 8 8 O 1.42096 * 106.40608 * 328.29278 * 7 6 5 9 9 O 1.42101 * 106.40099 * 195.37240 * 7 6 5 10 10 C 1.76208 * 107.21772 * 81.83227 * 7 6 5 11 11 C 1.33386 * 125.20065 * 185.14522 * 10 7 6 12 12 C 1.50701 * 122.54170 * 359.97438 * 11 10 7 13 13 O 1.42898 * 109.46871 * 284.99660 * 12 11 10 14 14 Si 1.86303 * 109.46930 * 164.99667 * 12 11 10 15 15 C 1.38427 * 114.91752 * 179.75308 * 11 10 7 16 16 C 1.33389 * 114.92170 * 0.42910 * 15 11 10 17 17 S 1.75881 * 125.20223 * 5.12677 * 10 7 6 18 18 C 1.53786 * 113.69312 * 276.23636 * 5 3 2 19 19 C 1.53780 * 87.08162 * 220.00729 * 18 5 3 20 20 O 1.42897 * 113.61411 * 270.88263 * 19 18 5 21 21 C 1.52999 * 113.69106 * 139.99175 * 19 18 5 22 22 F 1.39901 * 109.46901 * 322.46252 * 21 19 18 23 23 F 1.39893 * 109.47426 * 82.46120 * 21 19 18 24 24 F 1.39905 * 109.47048 * 202.46622 * 21 19 18 25 25 C 1.53783 * 87.08405 * 25.42936 * 19 18 5 26 26 H 1.08999 * 109.47153 * 184.48689 * 1 2 3 27 27 H 1.09000 * 109.46891 * 304.48244 * 1 2 3 28 28 H 1.08998 * 109.47359 * 64.48229 * 1 2 3 29 29 H 0.96996 * 120.00319 * 138.32471 * 6 5 3 30 30 H 1.08994 * 109.47044 * 44.99810 * 12 11 10 31 31 H 0.96698 * 114.00050 * 299.99556 * 13 12 11 32 32 H 1.48501 * 109.99913 * 58.68079 * 14 12 11 33 33 H 1.48500 * 109.99703 * 179.97438 * 14 12 11 34 34 H 1.07997 * 122.54043 * 180.27983 * 15 11 10 35 35 H 1.08002 * 125.20220 * 179.85834 * 16 15 11 36 36 H 1.09001 * 113.61044 * 334.55826 * 18 5 3 37 37 H 1.08999 * 113.61437 * 105.45633 * 18 5 3 38 38 H 0.96700 * 113.99880 * 277.49769 * 20 19 18 39 39 H 1.08993 * 113.61940 * 220.02066 * 25 19 18 40 40 H 1.08999 * 113.68892 * 89.12165 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4034 2.2093 -0.0160 5 6 3.5661 1.2750 0.0201 6 7 4.1956 0.3871 -0.9606 7 16 3.6124 -1.1468 -1.1831 8 8 3.1055 -1.5698 0.0752 9 8 4.6151 -1.8578 -1.8959 10 6 2.2253 -1.0259 -2.2630 11 6 1.4256 -2.0376 -2.6037 12 6 1.6264 -3.4390 -2.0872 13 8 2.7354 -4.0398 -2.7588 14 14 0.0899 -4.4438 -2.4041 15 6 0.3943 -1.7017 -3.4638 16 6 0.3619 -0.4191 -3.8287 17 16 1.6833 0.4474 -3.0563 18 6 4.1720 1.1644 1.4292 19 6 5.1677 2.2553 1.0013 20 8 6.3556 1.7407 0.3963 21 6 5.4563 3.2870 2.0937 22 9 4.2821 3.5524 2.8063 23 9 6.4274 2.7836 2.9658 24 9 5.9232 4.4685 1.5076 25 6 4.1081 2.7138 -0.0146 26 1 -0.3633 -1.0245 0.0804 27 1 -0.3633 0.5818 0.8471 28 1 -0.3634 0.4427 -0.9274 29 1 4.9538 0.6977 -1.4796 30 1 1.8246 -3.4064 -1.0159 31 1 2.6278 -4.1018 -3.7178 32 1 -0.2093 -4.4692 -3.8585 33 1 0.2754 -5.8281 -1.8999 34 1 -0.3279 -2.4239 -3.8149 35 1 -0.3669 0.0209 -4.4933 36 1 3.4935 1.4792 2.2221 37 1 4.6397 0.2003 1.6290 38 1 7.0259 1.4507 1.0302 39 1 4.5241 3.0005 -0.9803 40 1 3.4115 3.4522 0.3823 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18364790_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:16 Heat of formation + Delta-G solvation = -286.958072 kcal Electronic energy + Delta-G solvation = -39975.913373 eV Core-core repulsion = 34178.265164 eV Total energy + Delta-G solvation = -5797.648209 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.034 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -51.28200 -48.82151 -48.74950 -42.51860 -40.60851 -40.04911 -38.38131 -37.63994 -37.24939 -36.99911 -36.77840 -33.98309 -31.43625 -29.55665 -28.50983 -28.04339 -27.49769 -25.61717 -24.33083 -22.63774 -21.81148 -21.21295 -20.32093 -20.04474 -19.78076 -19.59599 -19.44123 -19.01328 -18.72467 -18.21426 -17.85504 -17.47905 -17.22608 -16.81392 -16.50012 -16.35565 -16.15028 -15.92278 -15.69679 -15.59518 -15.28425 -15.19021 -15.09778 -15.05084 -14.93938 -14.87768 -14.66132 -14.35427 -14.17939 -14.02449 -13.83442 -13.67216 -13.59550 -13.31137 -13.26305 -13.16681 -13.00122 -12.76441 -12.70981 -12.54037 -12.30815 -12.26984 -12.06116 -11.83459 -11.60170 -11.44464 -10.95808 -10.76932 -10.32471 -9.65869 -4.97225 -0.86756 -0.62114 0.20270 0.55537 0.83592 1.18431 1.19958 1.30575 1.56998 1.57109 1.77285 1.94857 2.23900 2.40826 2.45782 2.52200 2.65562 2.83186 3.15782 3.26201 3.34658 3.44329 3.47695 3.52588 3.96691 4.04203 4.13284 4.19339 4.26349 4.29750 4.36488 4.38034 4.48499 4.59282 4.65881 4.72900 4.79275 4.90276 5.11808 5.18182 5.67741 6.23698 6.38118 6.39183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.452 3.548 4 O -0.488 6.488 5 C 0.170 3.830 6 N -1.080 6.080 7 S 2.723 3.277 8 O -0.935 6.935 9 O -0.970 6.970 10 C -0.766 4.766 11 C 0.005 3.995 12 C -0.131 4.131 13 O -0.539 6.539 14 Si 0.803 3.197 15 C -0.164 4.164 16 C -0.147 4.147 17 S 0.185 5.815 18 C -0.158 4.158 19 C 0.076 3.924 20 O -0.509 6.509 21 C 0.439 3.561 22 F -0.176 7.176 23 F -0.180 7.180 24 F -0.178 7.178 25 C -0.097 4.097 26 H 0.129 0.871 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.441 0.559 30 H 0.120 0.880 31 H 0.391 0.609 32 H -0.255 1.255 33 H -0.298 1.298 34 H 0.179 0.821 35 H 0.208 0.792 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.409 0.591 39 H 0.132 0.868 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 1.959 -2.269 6.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.257 6.257 3 C 0.291 3.709 4 O -0.374 6.374 5 C 0.078 3.922 6 N -0.843 5.843 7 S 2.810 3.190 8 O -0.925 6.925 9 O -0.961 6.961 10 C -0.968 4.968 11 C -0.012 4.012 12 C -0.239 4.239 13 O -0.348 6.348 14 Si 0.703 3.297 15 C -0.193 4.193 16 C -0.284 4.284 17 S 0.451 5.549 18 C -0.197 4.197 19 C 0.031 3.969 20 O -0.319 6.319 21 C 0.384 3.616 22 F -0.157 7.157 23 F -0.162 7.162 24 F -0.159 7.159 25 C -0.135 4.135 26 H 0.147 0.853 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.280 0.720 30 H 0.138 0.862 31 H 0.240 0.760 32 H -0.181 1.181 33 H -0.226 1.226 34 H 0.196 0.804 35 H 0.225 0.775 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.263 0.737 39 H 0.150 0.850 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.631 2.425 -2.182 6.507 hybrid contribution 0.778 -0.865 -0.612 1.314 sum -4.852 1.560 -2.794 5.813 Atomic orbital electron populations 1.23711 0.74237 1.06185 1.03161 1.86794 1.25615 1.30751 1.82524 1.23436 0.90955 0.83015 0.73478 1.90706 1.66052 1.36438 1.44179 1.20574 0.85021 0.94534 0.92027 1.55277 1.45339 1.32793 1.50873 1.01082 0.72658 0.71672 0.73621 1.93598 1.80584 1.78734 1.39559 1.93633 1.57837 1.69148 1.75435 1.35456 1.28103 1.05547 1.27721 1.19026 0.92798 0.95027 0.94367 1.25811 1.03359 0.93693 1.01047 1.86720 1.40597 1.81633 1.25852 0.93719 0.78235 0.76560 0.81161 1.20470 1.00448 0.97722 1.00706 1.26435 1.01562 0.97176 1.03258 1.84273 1.24126 1.06618 1.39839 1.24359 0.98033 1.01558 0.95757 1.23142 0.88704 0.92513 0.92516 1.86573 1.26342 1.82388 1.36551 1.21130 0.74465 0.82699 0.83303 1.93207 1.47990 1.94463 1.80041 1.93202 1.64092 1.86989 1.71894 1.93231 1.88799 1.50110 1.83786 1.23559 0.94268 0.93404 1.02307 0.85292 0.91071 0.91110 0.71975 0.86185 0.75955 1.18061 1.22561 0.80418 0.77498 0.85106 0.86321 0.73727 0.84996 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 10.58 113.37 1.20 1.13 16 2 O -0.34 -0.51 4.30 -43.72 -0.19 -0.70 16 3 C 0.45 0.70 5.41 71.24 0.39 1.09 16 4 O -0.49 -1.84 15.59 21.98 0.34 -1.49 16 5 C 0.17 -0.17 1.13 3.39 0.00 -0.17 16 6 N -1.08 0.36 5.17 -153.07 -0.79 -0.44 16 7 S 2.72 16.29 4.69 -56.49 -0.26 16.02 16 8 O -0.93 -7.82 14.01 -118.56 -1.66 -9.49 16 9 O -0.97 -12.75 17.86 -127.97 -2.29 -15.03 16 10 C -0.77 -1.70 4.35 66.72 0.29 -1.41 16 11 C 0.01 0.00 5.14 -20.92 -0.11 -0.11 16 12 C -0.13 -0.24 2.33 71.24 0.17 -0.07 16 13 O -0.54 -3.27 12.72 -148.98 -1.90 -5.16 16 14 Si 0.80 -3.12 30.45 68.60 2.09 -1.03 16 15 C -0.16 0.91 8.74 21.22 0.19 1.10 16 16 C -0.15 1.00 11.23 66.72 0.75 1.75 16 17 S 0.19 -0.42 21.03 -56.49 -1.19 -1.61 16 18 C -0.16 0.40 6.70 31.12 0.21 0.61 16 19 C 0.08 -0.28 1.36 -10.27 -0.01 -0.30 16 20 O -0.51 2.69 12.54 -148.98 -1.87 0.82 16 21 C 0.44 -0.50 2.85 71.98 0.21 -0.30 16 22 F -0.18 -0.07 15.77 44.97 0.71 0.64 16 23 F -0.18 0.09 16.65 44.97 0.75 0.84 16 24 F -0.18 -0.23 17.18 44.97 0.77 0.55 16 25 C -0.10 0.40 6.29 31.12 0.20 0.59 16 26 H 0.13 -1.06 8.14 -2.39 -0.02 -1.08 16 27 H 0.07 -0.27 8.05 -2.39 -0.02 -0.29 16 28 H 0.07 -0.36 7.93 -2.39 -0.02 -0.38 16 29 H 0.44 -1.64 8.30 -96.75 -0.80 -2.44 16 30 H 0.12 0.43 6.93 -2.39 -0.02 0.41 16 31 H 0.39 -0.52 8.70 -74.06 -0.64 -1.16 16 32 H -0.26 0.93 6.81 99.48 0.68 1.61 16 33 H -0.30 -1.25 7.11 99.48 0.71 -0.54 16 34 H 0.18 -1.82 5.53 -2.91 -0.02 -1.84 16 35 H 0.21 -2.70 8.06 -2.91 -0.02 -2.73 16 36 H 0.13 -0.50 7.10 -2.39 -0.02 -0.51 16 37 H 0.12 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.41 -4.38 8.42 -74.06 -0.62 -5.00 16 39 H 0.13 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.14 -0.62 7.17 -2.39 -0.02 -0.64 16 Total: 0.00 -25.19 368.59 -2.89 -28.07 By element: Atomic # 1 Polarization: -15.04 SS G_CDS: -0.87 Total: -15.92 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 3.47 Total: 3.91 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -0.79 Total: -0.44 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -7.56 Total: -31.05 kcal Atomic # 9 Polarization: -0.20 SS G_CDS: 2.23 Total: 2.03 kcal Atomic # 14 Polarization: -3.12 SS G_CDS: 2.09 Total: -1.03 kcal Atomic # 16 Polarization: 15.87 SS G_CDS: -1.45 Total: 14.41 kcal Total: -25.19 -2.89 -28.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -258.886 kcal (2) G-P(sol) polarization free energy of solvation -25.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -286.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds