Wall clock time and date at job start Mon Mar 8 2021 11:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 117.00225 * 2 1 4 4 O 1.20827 * 119.99947 * 5.09832 * 3 2 1 5 5 C 1.50698 * 120.00040 * 185.10293 * 3 2 1 6 6 N 1.46500 * 112.90809 * 26.78184 * 5 3 2 7 7 S 1.65602 * 119.99711 * 286.97031 * 6 5 3 8 8 O 1.42095 * 106.40617 * 46.88996 * 7 6 5 9 9 O 1.42103 * 106.40174 * 179.81155 * 7 6 5 10 10 C 1.76198 * 107.21785 * 293.34785 * 7 6 5 11 11 C 1.33390 * 122.54212 * 279.94432 * 10 7 6 12 12 C 1.50703 * 125.20006 * 0.02850 * 11 10 7 13 13 O 1.42896 * 109.47196 * 24.54933 * 12 11 10 14 14 Si 1.86303 * 109.46852 * 144.55187 * 12 11 10 15 15 S 1.75887 * 109.59562 * 179.90455 * 11 10 7 16 16 C 1.75886 * 90.96828 * 0.30349 * 15 11 10 17 17 C 1.33391 * 109.59644 * 359.82757 * 16 15 11 18 18 C 1.54053 * 113.69386 * 255.45694 * 5 3 2 19 19 C 1.53781 * 87.07596 * 220.05368 * 18 5 3 20 20 O 1.42899 * 113.68792 * 270.87126 * 19 18 5 21 21 C 1.52997 * 113.61690 * 139.97545 * 19 18 5 22 22 F 1.39898 * 109.47086 * 322.50496 * 21 19 18 23 23 F 1.39902 * 109.47154 * 82.50111 * 21 19 18 24 24 F 1.39901 * 109.47372 * 202.50218 * 21 19 18 25 25 C 1.53779 * 113.61207 * 158.03288 * 5 3 2 26 26 H 1.08999 * 109.47183 * 64.61050 * 1 2 3 27 27 H 1.09000 * 109.47358 * 184.60830 * 1 2 3 28 28 H 1.09000 * 109.47355 * 304.61214 * 1 2 3 29 29 H 0.96999 * 120.00144 * 106.97163 * 6 5 3 30 30 H 1.09003 * 109.46645 * 264.55183 * 12 11 10 31 31 H 0.96701 * 113.99751 * 52.28939 * 13 12 11 32 32 H 1.48510 * 109.99648 * 185.16321 * 14 12 11 33 33 H 1.48492 * 110.00048 * 306.48198 * 14 12 11 34 34 H 1.08003 * 125.20342 * 179.86557 * 16 15 11 35 35 H 1.07992 * 122.54005 * 180.02562 * 17 16 15 36 36 H 1.08995 * 113.61789 * 105.50379 * 18 5 3 37 37 H 1.08997 * 113.68562 * 334.60864 * 18 5 3 38 38 H 0.96702 * 113.99964 * 277.53374 * 20 19 18 39 39 H 1.08991 * 113.61591 * 25.43473 * 25 5 3 40 40 H 1.09000 * 113.61199 * 254.60703 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4071 2.2074 0.0930 5 6 3.5618 1.2771 -0.1161 6 7 4.1422 0.1304 -0.8192 7 16 4.2162 -1.3467 -0.0743 8 8 2.9354 -1.5719 0.4986 9 8 4.8185 -2.2358 -1.0049 10 6 5.3436 -1.1963 1.2714 11 6 6.6666 -1.2428 1.1077 12 6 7.3729 -1.4246 -0.2112 13 8 6.5246 -0.9789 -1.2712 14 14 8.9472 -0.4284 -0.2149 15 16 7.4608 -1.0560 2.6659 16 6 5.9053 -0.9305 3.4772 17 6 4.9234 -1.0268 2.5794 18 6 4.2684 1.6088 1.2121 19 6 5.2059 2.5144 0.3961 20 8 6.3610 1.8402 -0.1071 21 6 5.5446 3.8332 1.0939 22 9 4.4167 4.3035 1.7751 23 9 6.5860 3.6250 2.0045 24 9 5.9407 4.7771 0.1403 25 6 4.0672 2.6354 -0.6304 26 1 -0.3633 0.4406 -0.9284 27 1 -0.3634 -1.0243 0.0826 28 1 -0.3634 0.5837 0.8458 29 1 4.4832 0.2364 -1.7211 30 1 7.6096 -2.4789 -0.3542 31 1 6.1777 -0.0847 -1.1478 32 1 9.5897 -0.4990 -1.5520 33 1 8.6547 0.9850 0.1340 34 1 5.7663 -0.7954 4.5397 35 1 3.8798 -0.9760 2.8523 36 1 4.7714 0.7541 1.6643 37 1 3.6409 2.1528 1.9179 38 1 7.0806 1.7611 0.5339 39 1 3.3838 3.4602 -0.4292 40 1 4.4081 2.6109 -1.6654 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18364790_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:21 Heat of formation + Delta-G solvation = -267.039308 kcal Electronic energy + Delta-G solvation = -41538.734995 eV Core-core repulsion = 35741.950529 eV Total energy + Delta-G solvation = -5796.784467 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.034 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -51.41065 -48.95072 -48.85533 -42.59447 -40.72298 -39.88955 -38.55284 -37.56885 -37.34183 -36.97686 -36.65556 -34.02170 -31.92341 -29.56779 -28.53123 -28.20933 -27.46457 -25.62500 -24.53399 -22.63958 -21.86714 -21.62478 -20.41762 -20.15247 -19.76057 -19.59932 -19.55487 -19.09035 -18.68338 -18.10540 -17.88458 -17.61886 -17.36873 -17.08237 -16.73387 -16.35645 -16.21511 -15.73164 -15.71754 -15.51585 -15.34623 -15.30357 -15.18145 -15.15079 -15.04330 -15.00495 -14.74777 -14.57291 -14.41646 -14.11045 -13.97997 -13.91499 -13.62242 -13.27230 -13.06523 -12.99079 -12.86078 -12.76893 -12.64681 -12.49999 -12.45032 -12.24591 -12.10102 -11.93510 -11.65518 -11.62803 -11.10984 -10.86477 -10.24398 -9.81677 -5.28426 -0.82265 -0.61931 0.16864 0.51383 0.83949 0.90430 0.99287 1.12949 1.25623 1.61838 1.70125 1.73249 1.94016 2.15499 2.27578 2.45244 2.55273 2.80990 2.92059 3.02391 3.15616 3.18708 3.40485 3.59473 3.70922 3.85089 3.95996 3.99840 4.05444 4.09983 4.26320 4.28412 4.32865 4.35468 4.44873 4.57965 4.72479 4.74608 4.94557 5.37188 5.52342 5.56964 6.01779 6.62878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.308 6.308 3 C 0.458 3.542 4 O -0.494 6.494 5 C 0.171 3.829 6 N -1.088 6.088 7 S 2.697 3.303 8 O -0.919 6.919 9 O -0.914 6.914 10 C -0.686 4.686 11 C -0.097 4.097 12 C -0.063 4.063 13 O -0.504 6.504 14 Si 0.684 3.316 15 S 0.170 5.830 16 C -0.213 4.213 17 C -0.079 4.079 18 C -0.182 4.182 19 C 0.068 3.932 20 O -0.515 6.515 21 C 0.440 3.560 22 F -0.167 7.167 23 F -0.178 7.178 24 F -0.169 7.169 25 C -0.094 4.094 26 H 0.062 0.938 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.429 0.571 30 H 0.149 0.851 31 H 0.366 0.634 32 H -0.232 1.232 33 H -0.242 1.242 34 H 0.178 0.822 35 H 0.160 0.840 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.392 0.608 39 H 0.141 0.859 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.450 0.147 3.125 4.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C 0.298 3.702 4 O -0.381 6.381 5 C 0.079 3.921 6 N -0.850 5.850 7 S 2.781 3.219 8 O -0.909 6.909 9 O -0.905 6.905 10 C -0.784 4.784 11 C -0.218 4.218 12 C -0.173 4.173 13 O -0.315 6.315 14 Si 0.582 3.418 15 S 0.434 5.566 16 C -0.348 4.348 17 C -0.107 4.107 18 C -0.221 4.221 19 C 0.024 3.976 20 O -0.326 6.326 21 C 0.385 3.615 22 F -0.148 7.148 23 F -0.160 7.160 24 F -0.150 7.150 25 C -0.132 4.132 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.268 0.732 30 H 0.166 0.834 31 H 0.219 0.781 32 H -0.155 1.155 33 H -0.168 1.168 34 H 0.195 0.805 35 H 0.178 0.822 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.246 0.754 39 H 0.159 0.841 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.441 -0.223 2.547 5.125 hybrid contribution -1.628 1.206 0.107 2.029 sum 2.814 0.983 2.655 3.991 Atomic orbital electron populations 1.23395 0.76207 1.04347 1.02351 1.86920 1.23162 1.30011 1.82064 1.23339 0.90585 0.82893 0.73414 1.90720 1.65861 1.36642 1.44915 1.20484 0.86673 0.89277 0.95694 1.55841 1.75688 1.25861 1.27656 1.02393 0.73653 0.72214 0.73601 1.93674 1.36452 1.82230 1.78556 1.93719 1.77383 1.59179 1.60173 1.30062 1.09612 1.21404 1.17304 1.25233 0.96239 0.99222 1.01106 1.25045 1.01586 1.08951 0.81734 1.87099 1.64809 1.35429 1.44118 0.95718 0.77664 0.79915 0.88533 1.84381 1.08715 1.67390 0.96146 1.25951 0.94780 1.09820 1.04277 1.19707 1.01753 0.99928 0.89314 1.24813 0.98305 1.02745 0.96204 1.23245 0.88470 0.88242 0.97601 1.86572 1.25519 1.77099 1.43401 1.20843 0.75042 0.87751 0.77816 1.93237 1.51196 1.89738 1.80653 1.93208 1.59247 1.94889 1.68639 1.93255 1.90820 1.67339 1.63564 1.23467 0.93112 0.95631 1.01021 0.91956 0.87595 0.91637 0.73245 0.83378 0.78055 1.15453 1.16775 0.80484 0.82239 0.85881 0.84650 0.75416 0.84101 0.86282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.65 101.05 1.08 1.09 16 2 O -0.31 -0.76 6.64 -47.41 -0.31 -1.08 16 3 C 0.46 0.73 7.21 36.00 0.26 0.99 16 4 O -0.49 -1.63 15.68 -18.75 -0.29 -1.92 16 5 C 0.17 -0.17 1.26 -132.02 -0.17 -0.34 16 6 N -1.09 1.12 3.53 0.38 0.00 1.12 16 7 S 2.70 4.06 4.81 -107.50 -0.52 3.54 16 8 O -0.92 -3.19 13.50 -67.21 -0.91 -4.10 16 9 O -0.91 -3.98 14.41 -67.39 -0.97 -4.95 16 10 C -0.69 0.24 4.01 -41.21 -0.17 0.07 16 11 C -0.10 0.13 5.56 -36.00 -0.20 -0.07 16 12 C -0.06 0.06 2.55 36.01 0.09 0.16 16 13 O -0.50 -0.40 8.22 -60.33 -0.50 -0.89 16 14 Si 0.68 -1.90 30.75 -169.99 -5.23 -7.12 16 15 S 0.17 -0.55 21.36 -107.50 -2.30 -2.84 16 16 C -0.21 0.59 11.23 29.04 0.33 0.92 16 17 C -0.08 0.11 7.41 -41.21 -0.31 -0.19 16 18 C -0.18 0.38 6.46 -25.78 -0.17 0.21 16 19 C 0.07 -0.15 1.36 -89.81 -0.12 -0.27 16 20 O -0.51 1.39 10.21 -35.23 -0.36 1.03 16 21 C 0.44 -0.37 2.85 37.16 0.11 -0.27 16 22 F -0.17 0.02 15.75 2.25 0.04 0.05 16 23 F -0.18 0.12 16.65 2.25 0.04 0.15 16 24 F -0.17 -0.07 17.18 2.25 0.04 -0.03 16 25 C -0.09 0.22 6.45 -25.92 -0.17 0.06 16 26 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 27 H 0.11 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.06 0.01 7.98 -51.93 -0.41 -0.40 16 29 H 0.43 -1.20 7.60 -34.47 -0.26 -1.46 16 30 H 0.15 -0.25 7.96 -51.93 -0.41 -0.67 16 31 H 0.37 -0.45 3.39 45.56 0.15 -0.29 16 32 H -0.23 -0.07 7.11 56.52 0.40 0.33 16 33 H -0.24 0.71 5.09 56.52 0.29 1.00 16 34 H 0.18 -0.85 8.06 -52.48 -0.42 -1.27 16 35 H 0.16 -0.32 7.81 -52.49 -0.41 -0.73 16 36 H 0.12 -0.32 2.65 -51.93 -0.14 -0.46 16 37 H 0.14 -0.35 7.09 -51.93 -0.37 -0.72 16 38 H 0.39 -1.48 6.01 45.56 0.27 -1.20 16 39 H 0.14 -0.31 7.11 -51.93 -0.37 -0.68 16 40 H 0.12 -0.49 8.12 -51.93 -0.42 -0.91 16 LS Contribution 347.92 15.07 5.24 5.24 Total: 0.00 -9.45 347.92 -8.41 -17.86 By element: Atomic # 1 Polarization: -5.48 SS G_CDS: -2.95 Total: -8.43 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 0.57 Total: 2.37 kcal Atomic # 7 Polarization: 1.12 SS G_CDS: 0.00 Total: 1.12 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -3.34 Total: -11.91 kcal Atomic # 9 Polarization: 0.06 SS G_CDS: 0.11 Total: 0.18 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.23 Total: -7.12 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.81 Total: 0.70 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -9.45 -8.41 -17.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -249.184 kcal (2) G-P(sol) polarization free energy of solvation -9.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -258.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds