Wall clock time and date at job start Mon Mar 8 2021 11:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34228 * 117.00225 * 2 1 4 4 O 1.20827 * 119.99947 * 5.09832 * 3 2 1 5 5 C 1.50698 * 120.00040 * 185.10293 * 3 2 1 6 6 N 1.46500 * 112.90809 * 26.78184 * 5 3 2 7 7 S 1.65602 * 119.99711 * 286.97031 * 6 5 3 8 8 O 1.42095 * 106.40617 * 46.88996 * 7 6 5 9 9 O 1.42103 * 106.40174 * 179.81155 * 7 6 5 10 10 C 1.76198 * 107.21785 * 293.34785 * 7 6 5 11 11 C 1.33390 * 122.54212 * 279.94432 * 10 7 6 12 12 C 1.50703 * 125.20006 * 0.02850 * 11 10 7 13 13 O 1.42896 * 109.47196 * 24.54933 * 12 11 10 14 14 Si 1.86303 * 109.46852 * 144.55187 * 12 11 10 15 15 S 1.75887 * 109.59562 * 179.90455 * 11 10 7 16 16 C 1.75886 * 90.96828 * 0.30349 * 15 11 10 17 17 C 1.33391 * 109.59644 * 359.82757 * 16 15 11 18 18 C 1.54053 * 113.69386 * 255.45694 * 5 3 2 19 19 C 1.53781 * 87.07596 * 220.05368 * 18 5 3 20 20 O 1.42899 * 113.68792 * 270.87126 * 19 18 5 21 21 C 1.52997 * 113.61690 * 139.97545 * 19 18 5 22 22 F 1.39898 * 109.47086 * 322.50496 * 21 19 18 23 23 F 1.39902 * 109.47154 * 82.50111 * 21 19 18 24 24 F 1.39901 * 109.47372 * 202.50218 * 21 19 18 25 25 C 1.53779 * 113.61207 * 158.03288 * 5 3 2 26 26 H 1.08999 * 109.47183 * 64.61050 * 1 2 3 27 27 H 1.09000 * 109.47358 * 184.60830 * 1 2 3 28 28 H 1.09000 * 109.47355 * 304.61214 * 1 2 3 29 29 H 0.96999 * 120.00144 * 106.97163 * 6 5 3 30 30 H 1.09003 * 109.46645 * 264.55183 * 12 11 10 31 31 H 0.96701 * 113.99751 * 52.28939 * 13 12 11 32 32 H 1.48510 * 109.99648 * 185.16321 * 14 12 11 33 33 H 1.48492 * 110.00048 * 306.48198 * 14 12 11 34 34 H 1.08003 * 125.20342 * 179.86557 * 16 15 11 35 35 H 1.07992 * 122.54005 * 180.02562 * 17 16 15 36 36 H 1.08995 * 113.61789 * 105.50379 * 18 5 3 37 37 H 1.08997 * 113.68562 * 334.60864 * 18 5 3 38 38 H 0.96702 * 113.99964 * 277.53374 * 20 19 18 39 39 H 1.08991 * 113.61591 * 25.43473 * 25 5 3 40 40 H 1.09000 * 113.61199 * 254.60703 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4071 2.2074 0.0930 5 6 3.5618 1.2771 -0.1161 6 7 4.1422 0.1304 -0.8192 7 16 4.2162 -1.3467 -0.0743 8 8 2.9354 -1.5719 0.4986 9 8 4.8185 -2.2358 -1.0049 10 6 5.3436 -1.1963 1.2714 11 6 6.6666 -1.2428 1.1077 12 6 7.3729 -1.4246 -0.2112 13 8 6.5246 -0.9789 -1.2712 14 14 8.9472 -0.4284 -0.2149 15 16 7.4608 -1.0560 2.6659 16 6 5.9053 -0.9305 3.4772 17 6 4.9234 -1.0268 2.5794 18 6 4.2684 1.6088 1.2121 19 6 5.2059 2.5144 0.3961 20 8 6.3610 1.8402 -0.1071 21 6 5.5446 3.8332 1.0939 22 9 4.4167 4.3035 1.7751 23 9 6.5860 3.6250 2.0045 24 9 5.9407 4.7771 0.1403 25 6 4.0672 2.6354 -0.6304 26 1 -0.3633 0.4406 -0.9284 27 1 -0.3634 -1.0243 0.0826 28 1 -0.3634 0.5837 0.8458 29 1 4.4832 0.2364 -1.7211 30 1 7.6096 -2.4789 -0.3542 31 1 6.1777 -0.0847 -1.1478 32 1 9.5897 -0.4990 -1.5520 33 1 8.6547 0.9850 0.1340 34 1 5.7663 -0.7954 4.5397 35 1 3.8798 -0.9760 2.8523 36 1 4.7714 0.7541 1.6643 37 1 3.6409 2.1528 1.9179 38 1 7.0806 1.7611 0.5339 39 1 3.3838 3.4602 -0.4292 40 1 4.4081 2.6109 -1.6654 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18364790_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:20 Heat of formation + Delta-G solvation = -268.721049 kcal Electronic energy + Delta-G solvation = -41538.807921 eV Core-core repulsion = 35741.950529 eV Total energy + Delta-G solvation = -5796.857392 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.034 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -51.35122 -48.88465 -48.81726 -42.55863 -40.73592 -39.79767 -38.58123 -37.65067 -37.32564 -36.94204 -36.82439 -33.93822 -31.78145 -29.55259 -28.51130 -28.05529 -27.32548 -25.60633 -24.39706 -22.60330 -21.80138 -21.53889 -20.36054 -20.13019 -19.70233 -19.53934 -19.46487 -19.09248 -18.68683 -18.04437 -17.88464 -17.60660 -17.35716 -17.03294 -16.64421 -16.24534 -16.22895 -15.68690 -15.67637 -15.42318 -15.25677 -15.23970 -15.14824 -15.08498 -14.99317 -14.95294 -14.67076 -14.48205 -14.36283 -14.07022 -13.85690 -13.80933 -13.52217 -13.21282 -13.13924 -13.03426 -12.95139 -12.76635 -12.59541 -12.48209 -12.31749 -12.18330 -12.13447 -11.80112 -11.73555 -11.54472 -11.00583 -10.86027 -10.07892 -9.60304 -5.08267 -0.81732 -0.51156 0.34755 0.69393 0.81740 1.01542 1.14396 1.20846 1.44971 1.63191 1.77339 1.88945 2.10605 2.28955 2.37827 2.56089 2.64461 2.77281 3.04243 3.12286 3.25555 3.30926 3.43456 3.57040 3.84915 3.98667 4.13828 4.18135 4.22395 4.25209 4.27735 4.32334 4.46735 4.49706 4.59063 4.72202 4.75002 4.93248 5.11624 5.29216 5.65263 5.83693 6.16087 6.52976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.322 6.322 3 C 0.456 3.544 4 O -0.516 6.516 5 C 0.170 3.830 6 N -1.080 6.080 7 S 2.703 3.297 8 O -0.947 6.947 9 O -0.951 6.951 10 C -0.692 4.692 11 C -0.108 4.108 12 C -0.086 4.086 13 O -0.524 6.524 14 Si 0.755 3.245 15 S 0.222 5.778 16 C -0.210 4.210 17 C -0.095 4.095 18 C -0.182 4.182 19 C 0.078 3.922 20 O -0.515 6.515 21 C 0.440 3.560 22 F -0.172 7.172 23 F -0.178 7.178 24 F -0.176 7.176 25 C -0.093 4.093 26 H 0.067 0.933 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.436 0.564 30 H 0.149 0.851 31 H 0.371 0.629 32 H -0.278 1.278 33 H -0.234 1.234 34 H 0.200 0.800 35 H 0.160 0.840 36 H 0.131 0.869 37 H 0.140 0.860 38 H 0.398 0.602 39 H 0.141 0.859 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.745 0.708 4.359 6.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.236 6.236 3 C 0.297 3.703 4 O -0.404 6.404 5 C 0.077 3.923 6 N -0.844 5.844 7 S 2.792 3.208 8 O -0.937 6.937 9 O -0.941 6.941 10 C -0.793 4.793 11 C -0.229 4.229 12 C -0.194 4.194 13 O -0.336 6.336 14 Si 0.654 3.346 15 S 0.486 5.514 16 C -0.345 4.345 17 C -0.123 4.123 18 C -0.220 4.220 19 C 0.035 3.965 20 O -0.327 6.327 21 C 0.385 3.615 22 F -0.154 7.154 23 F -0.160 7.160 24 F -0.158 7.158 25 C -0.131 4.131 26 H 0.086 0.914 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.277 0.723 30 H 0.166 0.834 31 H 0.225 0.775 32 H -0.204 1.204 33 H -0.159 1.159 34 H 0.217 0.783 35 H 0.177 0.823 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.253 0.747 39 H 0.158 0.842 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.705 0.322 3.773 6.847 hybrid contribution -1.984 1.000 -0.251 2.236 sum 3.721 1.322 3.522 5.291 Atomic orbital electron populations 1.23568 0.75611 1.05246 1.02728 1.86925 1.24048 1.30624 1.82010 1.23813 0.91546 0.82346 0.72592 1.90700 1.66583 1.37098 1.46033 1.20541 0.85153 0.89741 0.96843 1.55561 1.75562 1.25232 1.28046 1.01732 0.73281 0.72267 0.73537 1.93638 1.38150 1.82963 1.78964 1.93674 1.77888 1.60898 1.61652 1.29711 1.09526 1.23201 1.16911 1.25303 0.96243 0.99238 1.02134 1.25461 1.02536 1.09760 0.81628 1.87071 1.65500 1.36018 1.44998 0.95016 0.74657 0.79042 0.85897 1.84226 1.07501 1.65782 0.93922 1.26298 0.94759 1.08236 1.05249 1.19735 1.02267 1.01153 0.89110 1.24881 0.98220 1.03071 0.95802 1.23093 0.88546 0.87545 0.97360 1.86574 1.25592 1.76864 1.43662 1.20995 0.74837 0.87951 0.77696 1.93227 1.51485 1.89871 1.80781 1.93205 1.59235 1.94868 1.68654 1.93239 1.90896 1.67758 1.63858 1.23538 0.92912 0.94525 1.02142 0.91405 0.86479 0.91524 0.72347 0.83413 0.77465 1.20407 1.15923 0.78286 0.82276 0.85181 0.84165 0.74696 0.84152 0.84510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.05 10.65 113.37 1.21 1.26 16 2 O -0.32 -2.04 6.64 -43.60 -0.29 -2.33 16 3 C 0.46 1.94 7.21 71.24 0.51 2.45 16 4 O -0.52 -3.93 15.68 21.96 0.34 -3.58 16 5 C 0.17 -0.26 1.26 3.48 0.00 -0.25 16 6 N -1.08 1.28 3.53 -152.72 -0.54 0.75 16 7 S 2.70 11.66 4.81 -56.49 -0.27 11.39 16 8 O -0.95 -8.17 13.50 -118.41 -1.60 -9.77 16 9 O -0.95 -10.03 14.41 -118.24 -1.70 -11.73 16 10 C -0.69 0.37 4.01 21.22 0.08 0.45 16 11 C -0.11 0.33 5.56 24.59 0.14 0.47 16 12 C -0.09 0.16 2.55 71.24 0.18 0.34 16 13 O -0.52 -1.28 8.22 -124.98 -1.03 -2.30 16 14 Si 0.76 -4.62 30.75 68.60 2.11 -2.51 16 15 S 0.22 -1.84 21.36 -56.49 -1.21 -3.05 16 16 C -0.21 1.52 11.23 66.72 0.75 2.27 16 17 C -0.09 0.31 7.41 21.22 0.16 0.47 16 18 C -0.18 0.77 6.46 31.21 0.20 0.97 16 19 C 0.08 -0.39 1.36 -10.27 -0.01 -0.40 16 20 O -0.51 3.22 10.21 -148.98 -1.52 1.69 16 21 C 0.44 -1.01 2.85 71.98 0.21 -0.81 16 22 F -0.17 0.08 15.75 44.97 0.71 0.79 16 23 F -0.18 0.43 16.65 44.97 0.75 1.18 16 24 F -0.18 -0.05 17.18 44.97 0.77 0.72 16 25 C -0.09 0.45 6.45 31.12 0.20 0.65 16 26 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.07 0.11 7.98 -2.39 -0.02 0.09 16 29 H 0.44 -2.02 7.60 -96.74 -0.74 -2.76 16 30 H 0.15 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.37 -0.73 3.39 -74.06 -0.25 -0.98 16 32 H -0.28 -0.45 7.11 99.48 0.71 0.25 16 33 H -0.23 1.81 5.09 99.48 0.51 2.32 16 34 H 0.20 -2.41 8.06 -2.91 -0.02 -2.43 16 35 H 0.16 -0.57 7.81 -2.91 -0.02 -0.60 16 36 H 0.13 -0.72 2.65 -2.39 -0.01 -0.72 16 37 H 0.14 -0.73 7.09 -2.39 -0.02 -0.75 16 38 H 0.40 -3.61 6.01 -74.06 -0.44 -4.05 16 39 H 0.14 -0.60 7.11 -2.39 -0.02 -0.62 16 40 H 0.14 -1.19 8.12 -2.39 -0.02 -1.21 16 Total: 0.00 -22.57 347.92 -0.25 -22.82 By element: Atomic # 1 Polarization: -11.53 SS G_CDS: -0.40 Total: -11.93 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 3.63 Total: 7.87 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -0.54 Total: 0.75 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -5.80 Total: -28.03 kcal Atomic # 9 Polarization: 0.46 SS G_CDS: 2.23 Total: 2.69 kcal Atomic # 14 Polarization: -4.62 SS G_CDS: 2.11 Total: -2.51 kcal Atomic # 16 Polarization: 9.82 SS G_CDS: -1.48 Total: 8.34 kcal Total: -22.57 -0.25 -22.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -245.902 kcal (2) G-P(sol) polarization free energy of solvation -22.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds