Wall clock time and date at job start Mon Mar 8 2021 11:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00003 * 2 1 4 4 O 1.20822 * 120.00033 * 5.28493 * 3 2 1 5 5 C 1.50707 * 119.99915 * 185.29255 * 3 2 1 6 6 N 1.46500 * 112.84695 * 322.51751 * 5 3 2 7 7 S 1.65601 * 119.99679 * 290.20525 * 6 5 3 8 8 O 1.42104 * 106.40611 * 310.85056 * 7 6 5 9 9 O 1.42101 * 106.40139 * 177.93958 * 7 6 5 10 10 C 1.76195 * 107.22346 * 64.39854 * 7 6 5 11 11 C 1.33390 * 122.54323 * 83.85674 * 10 7 6 12 12 S 1.75880 * 109.59362 * 180.02562 * 11 10 7 13 13 C 1.75881 * 90.97537 * 0.02562 * 12 11 10 14 14 C 1.50690 * 125.20817 * 179.97438 * 13 12 11 15 15 O 1.42906 * 109.46996 * 245.04041 * 14 13 12 16 16 Si 1.86301 * 109.47096 * 5.03481 * 14 13 12 17 17 C 1.33396 * 109.59136 * 0.22922 * 13 12 11 18 18 C 1.53777 * 113.61242 * 191.32128 * 5 3 2 19 19 C 1.53781 * 87.08296 * 219.93252 * 18 5 3 20 20 O 1.42898 * 113.61483 * 270.80147 * 19 18 5 21 21 C 1.52996 * 113.61784 * 139.98082 * 19 18 5 22 22 F 1.39897 * 109.46866 * 60.00037 * 21 19 18 23 23 F 1.39891 * 109.47335 * 180.02562 * 21 19 18 24 24 F 1.39905 * 109.47237 * 300.00470 * 21 19 18 25 25 C 1.53774 * 113.69286 * 93.78447 * 5 3 2 26 26 H 1.09000 * 109.47125 * 64.51550 * 1 2 3 27 27 H 1.08996 * 109.46922 * 184.51535 * 1 2 3 28 28 H 1.08998 * 109.46803 * 304.51876 * 1 2 3 29 29 H 0.96994 * 120.00180 * 110.20474 * 6 5 3 30 30 H 1.07998 * 125.19844 * 359.97438 * 11 10 7 31 31 H 1.08993 * 109.47520 * 125.03823 * 14 13 12 32 32 H 0.96695 * 114.00530 * 56.77619 * 15 14 13 33 33 H 1.48499 * 110.00014 * 58.67995 * 16 14 13 34 34 H 1.48493 * 110.00343 * 180.02562 * 16 14 13 35 35 H 1.07995 * 122.54119 * 179.75192 * 17 13 12 36 36 H 1.09002 * 113.61990 * 334.48287 * 18 5 3 37 37 H 1.09007 * 113.61649 * 105.38258 * 18 5 3 38 38 H 0.96698 * 114.00292 * 179.97438 * 20 19 18 39 39 H 1.08995 * 113.61721 * 254.54084 * 25 5 3 40 40 H 1.09001 * 113.61551 * 25.44763 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4073 2.2073 0.0964 5 6 3.5614 1.2774 -0.1204 6 7 4.2491 0.2049 0.6028 7 16 4.2472 0.1893 2.2587 8 8 4.6289 1.4940 2.6728 9 8 4.9449 -0.9852 2.6498 10 6 2.5772 -0.0284 2.7765 11 6 2.0032 -1.2295 2.8621 12 16 0.3412 -1.0513 3.4090 13 6 0.5242 0.6960 3.4924 14 6 -0.5514 1.6630 3.9150 15 8 -0.9036 2.4968 2.8091 16 14 -2.0520 0.7146 4.4802 17 6 1.7593 1.0347 3.1190 18 6 4.1276 2.6774 0.1696 19 6 5.0993 2.4404 -0.9985 20 8 6.3221 1.8129 -0.6075 21 6 5.3190 3.6761 -1.8735 22 9 5.8472 4.7111 -1.0944 23 9 6.2123 3.3650 -2.9041 24 9 4.0978 4.0822 -2.4222 25 6 4.0563 1.4623 -1.5645 26 1 -0.3633 0.4422 -0.9277 27 1 -0.3633 -1.0244 0.0809 28 1 -0.3633 0.5824 0.8467 29 1 4.7055 -0.4961 0.1117 30 1 2.4852 -2.1677 2.6302 31 1 -0.1829 2.2815 4.7334 32 1 -1.1937 2.0096 2.0259 33 1 -1.6918 -0.1800 5.6094 34 1 -3.1204 1.6570 4.8991 35 1 2.0965 2.0602 3.0892 36 1 3.4154 3.4826 -0.0114 37 1 4.6206 2.7570 1.1385 38 1 6.9373 1.6608 -1.3380 39 1 4.4918 0.5609 -1.9957 40 1 3.3247 1.9353 -2.2196 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_18364790_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:26 Heat of formation + Delta-G solvation = -290.327056 kcal Electronic energy + Delta-G solvation = -39952.702242 eV Core-core repulsion = 34154.907943 eV Total energy + Delta-G solvation = -5797.794299 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.034 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -51.27209 -48.82535 -48.70404 -42.54050 -40.66179 -39.52958 -38.34488 -37.69623 -37.59874 -36.97891 -36.88725 -33.95965 -31.88674 -29.68471 -28.59556 -27.69372 -27.27959 -25.67595 -24.97816 -22.62154 -21.69609 -21.31957 -20.43530 -20.13575 -19.59481 -19.52820 -19.29445 -19.03777 -18.73911 -18.14797 -17.87691 -17.72977 -17.47369 -17.27072 -16.49666 -16.37730 -16.18774 -15.74636 -15.57912 -15.47461 -15.28950 -15.18061 -15.16645 -14.96599 -14.89666 -14.85567 -14.72049 -14.36015 -14.28392 -14.23336 -14.06383 -13.97480 -13.78879 -13.43418 -13.23567 -13.11482 -13.01368 -12.99985 -12.90000 -12.53676 -12.31898 -12.27448 -11.94540 -11.90463 -11.76752 -11.63831 -10.90659 -10.68222 -10.24728 -9.92825 -5.33424 -0.92036 -0.54385 0.22110 0.48373 0.74054 0.93424 1.07084 1.16998 1.44713 1.52146 1.75416 1.78170 2.15391 2.33279 2.43560 2.52784 2.59810 2.80753 3.07211 3.16751 3.27288 3.32562 3.37788 3.53498 3.75358 3.80302 3.96618 4.00813 4.05838 4.07186 4.16041 4.20051 4.31596 4.39841 4.55098 4.59265 4.80719 4.84607 5.00017 5.11091 5.56740 5.96934 6.36646 6.43779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.343 6.343 3 C 0.455 3.545 4 O -0.471 6.471 5 C 0.170 3.830 6 N -1.077 6.077 7 S 2.708 3.292 8 O -0.939 6.939 9 O -0.944 6.944 10 C -0.694 4.694 11 C -0.065 4.065 12 S 0.157 5.843 13 C -0.229 4.229 14 C -0.027 4.027 15 O -0.525 6.525 16 Si 0.654 3.346 17 C -0.042 4.042 18 C -0.131 4.131 19 C 0.070 3.930 20 O -0.500 6.500 21 C 0.438 3.562 22 F -0.168 7.168 23 F -0.180 7.180 24 F -0.171 7.171 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.063 0.937 29 H 0.430 0.570 30 H 0.186 0.814 31 H 0.127 0.873 32 H 0.376 0.624 33 H -0.238 1.238 34 H -0.231 1.231 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.146 0.854 38 H 0.393 0.607 39 H 0.116 0.884 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 -5.636 -4.822 8.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.258 6.258 3 C 0.293 3.707 4 O -0.355 6.355 5 C 0.077 3.923 6 N -0.837 5.837 7 S 2.796 3.204 8 O -0.929 6.929 9 O -0.934 6.934 10 C -0.794 4.794 11 C -0.204 4.204 12 S 0.420 5.580 13 C -0.347 4.347 14 C -0.140 4.140 15 O -0.331 6.331 16 Si 0.553 3.447 17 C -0.071 4.071 18 C -0.169 4.169 19 C 0.026 3.974 20 O -0.307 6.307 21 C 0.383 3.617 22 F -0.150 7.150 23 F -0.161 7.161 24 F -0.153 7.153 25 C -0.175 4.175 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.268 0.732 30 H 0.203 0.797 31 H 0.144 0.856 32 H 0.224 0.776 33 H -0.162 1.162 34 H -0.154 1.154 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.244 0.756 39 H 0.134 0.866 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.301 -5.774 -2.162 8.131 hybrid contribution 1.308 0.915 -1.259 2.033 sum -3.993 -4.858 -3.422 7.159 Atomic orbital electron populations 1.23481 0.75989 1.04293 1.02821 1.86531 1.23544 1.32283 1.83473 1.23519 0.90831 0.82444 0.73898 1.90763 1.65805 1.36093 1.42794 1.20560 0.84746 0.89883 0.97082 1.55171 1.67315 1.35443 1.25740 1.01748 0.73014 0.74072 0.71601 1.93549 1.80261 1.39064 1.79995 1.93638 1.70423 1.49307 1.80060 1.29951 1.27819 0.99072 1.22577 1.25828 0.97753 1.00698 0.96116 1.84301 1.09928 1.01935 1.61841 1.25034 1.00580 0.97021 1.12042 1.24496 1.00842 0.95250 0.93455 1.86611 1.87740 1.34569 1.24148 0.95314 0.79173 0.83033 0.87203 1.19647 0.91264 0.99458 0.96752 1.24068 0.96076 0.94795 1.01966 1.23201 0.88078 0.89471 0.96663 1.86710 1.26497 1.79543 1.37935 1.20977 0.74469 0.86513 0.79718 1.93258 1.86479 1.61003 1.74211 1.93200 1.68939 1.92814 1.61147 1.93216 1.43936 1.91602 1.86527 1.23998 0.98236 1.01511 0.93795 0.91292 0.87542 0.91823 0.73239 0.79724 0.85581 0.77648 1.16193 1.15375 0.82562 0.84487 0.83593 0.75599 0.86563 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.11 10.65 101.05 1.08 0.96 16 2 O -0.34 0.78 9.42 -39.26 -0.37 0.41 16 3 C 0.45 -0.39 4.99 36.01 0.18 -0.21 16 4 O -0.47 -0.55 15.56 -18.75 -0.29 -0.84 16 5 C 0.17 -0.29 1.27 -132.16 -0.17 -0.45 16 6 N -1.08 2.25 5.00 0.26 0.00 2.25 16 7 S 2.71 2.83 5.78 -107.50 -0.62 2.21 16 8 O -0.94 -3.37 14.48 -57.17 -0.83 -4.20 16 9 O -0.94 -3.23 17.75 -57.17 -1.01 -4.24 16 10 C -0.69 -0.10 3.96 -41.20 -0.16 -0.26 16 11 C -0.06 0.10 10.54 29.04 0.31 0.40 16 12 S 0.16 -0.34 20.60 -107.50 -2.21 -2.55 16 13 C -0.23 0.12 5.20 -36.01 -0.19 -0.06 16 14 C -0.03 0.02 2.96 36.00 0.11 0.13 16 15 O -0.53 0.00 12.85 -35.23 -0.45 -0.45 16 16 Si 0.65 -1.07 31.03 -169.99 -5.27 -6.34 16 17 C -0.04 -0.03 8.52 -41.20 -0.35 -0.38 16 18 C -0.13 0.03 6.14 -25.92 -0.16 -0.13 16 19 C 0.07 -0.12 1.36 -89.81 -0.12 -0.24 16 20 O -0.50 1.08 12.92 -35.23 -0.46 0.62 16 21 C 0.44 -0.14 2.85 37.16 0.11 -0.04 16 22 F -0.17 -0.30 17.18 2.25 0.04 -0.26 16 23 F -0.18 0.11 16.65 2.25 0.04 0.14 16 24 F -0.17 -0.03 15.75 2.25 0.04 0.01 16 25 C -0.14 0.50 6.64 -25.92 -0.17 0.33 16 26 H 0.07 -0.30 8.14 -51.93 -0.42 -0.72 16 27 H 0.11 -0.66 8.14 -51.93 -0.42 -1.08 16 28 H 0.06 -0.26 6.10 -51.93 -0.32 -0.58 16 29 H 0.43 -1.98 8.82 -34.47 -0.30 -2.29 16 30 H 0.19 -0.66 8.06 -52.49 -0.42 -1.08 16 31 H 0.13 -0.04 7.96 -51.93 -0.41 -0.45 16 32 H 0.38 -1.25 7.34 45.56 0.33 -0.91 16 33 H -0.24 -0.11 7.11 56.52 0.40 0.29 16 34 H -0.23 -0.28 7.11 56.52 0.40 0.12 16 35 H 0.16 0.23 7.87 -52.49 -0.41 -0.19 16 36 H 0.14 -0.06 7.09 -51.93 -0.37 -0.43 16 37 H 0.15 0.21 5.31 -51.93 -0.28 -0.06 16 38 H 0.39 -2.26 8.42 45.56 0.38 -1.87 16 39 H 0.12 -0.71 8.10 -51.93 -0.42 -1.14 16 40 H 0.13 -0.51 7.09 -51.93 -0.37 -0.88 16 LS Contribution 372.72 15.07 5.62 5.62 Total: 0.00 -10.88 372.72 -7.97 -18.85 By element: Atomic # 1 Polarization: -8.64 SS G_CDS: -2.63 Total: -11.27 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 0.45 Total: 0.04 kcal Atomic # 7 Polarization: 2.25 SS G_CDS: 0.00 Total: 2.25 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -3.41 Total: -8.70 kcal Atomic # 9 Polarization: -0.22 SS G_CDS: 0.11 Total: -0.10 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.27 Total: -6.34 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.84 Total: -0.35 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -10.88 -7.97 -18.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -271.475 kcal (2) G-P(sol) polarization free energy of solvation -10.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -290.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds