Wall clock time and date at job start Mon Mar 8 2021 11:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00003 * 2 1 4 4 O 1.20822 * 120.00033 * 5.28493 * 3 2 1 5 5 C 1.50707 * 119.99915 * 185.29255 * 3 2 1 6 6 N 1.46500 * 112.84695 * 322.51751 * 5 3 2 7 7 S 1.65601 * 119.99679 * 290.20525 * 6 5 3 8 8 O 1.42104 * 106.40611 * 310.85056 * 7 6 5 9 9 O 1.42101 * 106.40139 * 177.93958 * 7 6 5 10 10 C 1.76195 * 107.22346 * 64.39854 * 7 6 5 11 11 C 1.33390 * 122.54323 * 83.85674 * 10 7 6 12 12 S 1.75880 * 109.59362 * 180.02562 * 11 10 7 13 13 C 1.75881 * 90.97537 * 0.02562 * 12 11 10 14 14 C 1.50690 * 125.20817 * 179.97438 * 13 12 11 15 15 O 1.42906 * 109.46996 * 245.04041 * 14 13 12 16 16 Si 1.86301 * 109.47096 * 5.03481 * 14 13 12 17 17 C 1.33396 * 109.59136 * 0.22922 * 13 12 11 18 18 C 1.53777 * 113.61242 * 191.32128 * 5 3 2 19 19 C 1.53781 * 87.08296 * 219.93252 * 18 5 3 20 20 O 1.42898 * 113.61483 * 270.80147 * 19 18 5 21 21 C 1.52996 * 113.61784 * 139.98082 * 19 18 5 22 22 F 1.39897 * 109.46866 * 60.00037 * 21 19 18 23 23 F 1.39891 * 109.47335 * 180.02562 * 21 19 18 24 24 F 1.39905 * 109.47237 * 300.00470 * 21 19 18 25 25 C 1.53774 * 113.69286 * 93.78447 * 5 3 2 26 26 H 1.09000 * 109.47125 * 64.51550 * 1 2 3 27 27 H 1.08996 * 109.46922 * 184.51535 * 1 2 3 28 28 H 1.08998 * 109.46803 * 304.51876 * 1 2 3 29 29 H 0.96994 * 120.00180 * 110.20474 * 6 5 3 30 30 H 1.07998 * 125.19844 * 359.97438 * 11 10 7 31 31 H 1.08993 * 109.47520 * 125.03823 * 14 13 12 32 32 H 0.96695 * 114.00530 * 56.77619 * 15 14 13 33 33 H 1.48499 * 110.00014 * 58.67995 * 16 14 13 34 34 H 1.48493 * 110.00343 * 180.02562 * 16 14 13 35 35 H 1.07995 * 122.54119 * 179.75192 * 17 13 12 36 36 H 1.09002 * 113.61990 * 334.48287 * 18 5 3 37 37 H 1.09007 * 113.61649 * 105.38258 * 18 5 3 38 38 H 0.96698 * 114.00292 * 179.97438 * 20 19 18 39 39 H 1.08995 * 113.61721 * 254.54084 * 25 5 3 40 40 H 1.09001 * 113.61551 * 25.44763 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4073 2.2073 0.0964 5 6 3.5614 1.2774 -0.1204 6 7 4.2491 0.2049 0.6028 7 16 4.2472 0.1893 2.2587 8 8 4.6289 1.4940 2.6728 9 8 4.9449 -0.9852 2.6498 10 6 2.5772 -0.0284 2.7765 11 6 2.0032 -1.2295 2.8621 12 16 0.3412 -1.0513 3.4090 13 6 0.5242 0.6960 3.4924 14 6 -0.5514 1.6630 3.9150 15 8 -0.9036 2.4968 2.8091 16 14 -2.0520 0.7146 4.4802 17 6 1.7593 1.0347 3.1190 18 6 4.1276 2.6774 0.1696 19 6 5.0993 2.4404 -0.9985 20 8 6.3221 1.8129 -0.6075 21 6 5.3190 3.6761 -1.8735 22 9 5.8472 4.7111 -1.0944 23 9 6.2123 3.3650 -2.9041 24 9 4.0978 4.0822 -2.4222 25 6 4.0563 1.4623 -1.5645 26 1 -0.3633 0.4422 -0.9277 27 1 -0.3633 -1.0244 0.0809 28 1 -0.3633 0.5824 0.8467 29 1 4.7055 -0.4961 0.1117 30 1 2.4852 -2.1677 2.6302 31 1 -0.1829 2.2815 4.7334 32 1 -1.1937 2.0096 2.0259 33 1 -1.6918 -0.1800 5.6094 34 1 -3.1204 1.6570 4.8991 35 1 2.0965 2.0602 3.0892 36 1 3.4154 3.4826 -0.0114 37 1 4.6206 2.7570 1.1385 38 1 6.9373 1.6608 -1.3380 39 1 4.4918 0.5609 -1.9957 40 1 3.3247 1.9353 -2.2196 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_18364790_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:26:25 Heat of formation + Delta-G solvation = -297.098167 kcal Electronic energy + Delta-G solvation = -39952.995860 eV Core-core repulsion = 34154.907943 eV Total energy + Delta-G solvation = -5798.087917 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.034 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -51.27382 -48.80382 -48.75271 -42.41475 -40.51616 -39.48710 -38.49220 -37.57083 -37.55414 -37.13384 -36.75919 -33.84628 -31.83735 -29.50650 -28.41812 -27.52867 -27.22839 -25.55401 -24.94305 -22.51448 -21.65151 -21.24918 -20.35715 -20.09229 -19.59749 -19.50751 -19.22755 -18.94862 -18.73855 -18.01767 -17.81700 -17.69507 -17.33173 -17.15468 -16.42150 -16.34612 -16.18388 -15.71685 -15.58808 -15.45488 -15.18174 -15.16953 -15.06132 -14.94342 -14.91082 -14.83856 -14.61691 -14.30708 -14.20040 -14.11396 -13.98952 -13.95359 -13.77328 -13.40985 -13.18492 -13.10632 -13.02197 -12.96247 -12.73347 -12.56320 -12.28306 -12.19457 -11.82459 -11.73948 -11.69772 -11.51641 -10.80709 -10.63625 -10.17695 -9.82223 -5.24779 -0.93961 -0.47938 0.31464 0.54471 0.83959 0.94971 1.13992 1.29053 1.51067 1.64224 1.80161 1.83501 2.29220 2.46934 2.52427 2.54708 2.69446 2.90769 3.07651 3.25700 3.33994 3.41045 3.52791 3.63125 3.89033 3.95634 4.15736 4.20933 4.28875 4.33564 4.36235 4.41925 4.52328 4.60083 4.68603 4.80308 4.82438 4.89435 4.99434 5.28226 5.85357 6.34604 6.55940 6.59445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.339 6.339 3 C 0.458 3.542 4 O -0.496 6.496 5 C 0.169 3.831 6 N -1.062 6.062 7 S 2.718 3.282 8 O -0.973 6.973 9 O -0.971 6.971 10 C -0.705 4.705 11 C -0.064 4.064 12 S 0.208 5.792 13 C -0.238 4.238 14 C -0.038 4.038 15 O -0.542 6.542 16 Si 0.740 3.260 17 C -0.055 4.055 18 C -0.146 4.146 19 C 0.077 3.923 20 O -0.509 6.509 21 C 0.436 3.564 22 F -0.185 7.185 23 F -0.177 7.177 24 F -0.175 7.175 25 C -0.122 4.122 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.063 0.937 29 H 0.443 0.557 30 H 0.209 0.791 31 H 0.116 0.884 32 H 0.389 0.611 33 H -0.260 1.260 34 H -0.272 1.272 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.409 0.591 39 H 0.149 0.851 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 -7.845 -5.986 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.254 6.254 3 C 0.297 3.703 4 O -0.382 6.382 5 C 0.077 3.923 6 N -0.826 5.826 7 S 2.807 3.193 8 O -0.963 6.963 9 O -0.961 6.961 10 C -0.806 4.806 11 C -0.204 4.204 12 S 0.472 5.528 13 C -0.355 4.355 14 C -0.150 4.150 15 O -0.350 6.350 16 Si 0.642 3.358 17 C -0.084 4.084 18 C -0.185 4.185 19 C 0.033 3.967 20 O -0.319 6.319 21 C 0.381 3.619 22 F -0.166 7.166 23 F -0.158 7.158 24 F -0.156 7.156 25 C -0.161 4.161 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.082 0.918 29 H 0.284 0.716 30 H 0.225 0.775 31 H 0.133 0.867 32 H 0.239 0.761 33 H -0.186 1.186 34 H -0.197 1.197 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.262 0.738 39 H 0.167 0.833 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.003 -8.007 -3.371 10.560 hybrid contribution 1.481 1.634 -0.872 2.371 sum -4.521 -6.373 -4.242 8.892 Atomic orbital electron populations 1.23793 0.74904 1.06062 1.03089 1.86521 1.24637 1.31269 1.82993 1.23577 0.90981 0.82507 0.73211 1.90754 1.66358 1.36996 1.44111 1.20526 0.84545 0.88906 0.98348 1.54806 1.67357 1.35777 1.24613 1.01106 0.73157 0.72847 0.72142 1.93518 1.81275 1.40473 1.81020 1.93596 1.71571 1.49931 1.80990 1.29685 1.27116 0.99644 1.24196 1.26205 0.98335 1.00967 0.94847 1.84100 1.08734 0.99455 1.60552 1.25123 1.00134 0.98590 1.11703 1.24707 1.01699 0.95380 0.93210 1.86576 1.87892 1.35580 1.24966 0.94365 0.75724 0.80452 0.85270 1.19551 0.92035 0.98923 0.97928 1.24068 0.96787 0.95955 1.01652 1.23111 0.88506 0.89358 0.95771 1.86689 1.26770 1.79243 1.39186 1.21232 0.74235 0.86584 0.79823 1.93221 1.86740 1.61962 1.74712 1.93200 1.68843 1.92721 1.61032 1.93205 1.44130 1.91716 1.86589 1.24054 0.97328 1.02155 0.92520 0.90983 0.84929 0.91849 0.71628 0.77461 0.86665 0.76070 1.18615 1.19724 0.84480 0.85022 0.85675 0.73774 0.83284 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.13 10.65 113.37 1.21 1.07 16 2 O -0.34 1.85 9.42 -51.42 -0.48 1.36 16 3 C 0.46 -0.68 4.99 71.24 0.36 -0.33 16 4 O -0.50 -1.67 15.56 21.97 0.34 -1.33 16 5 C 0.17 -0.52 1.27 3.38 0.00 -0.52 16 6 N -1.06 4.36 5.00 -153.09 -0.76 3.59 16 7 S 2.72 8.63 5.78 -56.49 -0.33 8.30 16 8 O -0.97 -9.42 14.48 -128.00 -1.85 -11.28 16 9 O -0.97 -7.22 17.75 -128.00 -2.27 -9.49 16 10 C -0.71 -0.52 3.96 21.22 0.08 -0.44 16 11 C -0.06 0.25 10.54 66.72 0.70 0.96 16 12 S 0.21 -1.18 20.60 -56.49 -1.16 -2.35 16 13 C -0.24 0.18 5.20 24.59 0.13 0.31 16 14 C -0.04 0.02 2.96 71.23 0.21 0.23 16 15 O -0.54 -0.50 12.85 -148.98 -1.91 -2.42 16 16 Si 0.74 -2.50 31.03 68.60 2.13 -0.37 16 17 C -0.06 -0.14 8.52 21.22 0.18 0.04 16 18 C -0.15 -0.19 6.14 31.12 0.19 0.00 16 19 C 0.08 -0.23 1.36 -10.27 -0.01 -0.25 16 20 O -0.51 2.14 12.92 -148.98 -1.92 0.22 16 21 C 0.44 0.00 2.85 71.98 0.21 0.20 16 22 F -0.18 -0.94 17.18 44.97 0.77 -0.17 16 23 F -0.18 0.23 16.65 44.97 0.75 0.98 16 24 F -0.17 -0.16 15.75 44.97 0.71 0.55 16 25 C -0.12 1.01 6.64 31.12 0.21 1.21 16 26 H 0.07 -0.69 8.14 -2.39 -0.02 -0.71 16 27 H 0.13 -1.96 8.14 -2.39 -0.02 -1.98 16 28 H 0.06 -0.57 6.10 -2.39 -0.01 -0.59 16 29 H 0.44 -4.44 8.82 -96.75 -0.85 -5.30 16 30 H 0.21 -1.88 8.06 -2.91 -0.02 -1.90 16 31 H 0.12 0.12 7.96 -2.39 -0.02 0.10 16 32 H 0.39 -2.46 7.34 -74.06 -0.54 -3.01 16 33 H -0.26 -0.10 7.11 99.48 0.71 0.60 16 34 H -0.27 -0.91 7.11 99.48 0.71 -0.21 16 35 H 0.14 0.83 7.87 -2.91 -0.02 0.80 16 36 H 0.13 0.22 7.09 -2.39 -0.02 0.21 16 37 H 0.13 0.73 5.31 -2.38 -0.01 0.72 16 38 H 0.41 -4.91 8.42 -74.06 -0.62 -5.53 16 39 H 0.15 -2.22 8.10 -2.39 -0.02 -2.24 16 40 H 0.13 -1.22 7.09 -2.39 -0.02 -1.24 16 Total: 0.00 -26.84 372.72 -3.33 -30.17 By element: Atomic # 1 Polarization: -19.47 SS G_CDS: -0.79 Total: -20.26 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 3.46 Total: 2.49 kcal Atomic # 7 Polarization: 4.36 SS G_CDS: -0.76 Total: 3.59 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -8.11 Total: -22.93 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 2.23 Total: 1.35 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.13 Total: -0.37 kcal Atomic # 16 Polarization: 7.45 SS G_CDS: -1.49 Total: 5.96 kcal Total: -26.84 -3.33 -30.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_18364790_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -266.929 kcal (2) G-P(sol) polarization free energy of solvation -26.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -293.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds